Wall clock time and date at job start Sun Mar 29 2020 23:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00334 * 2 1 4 4 C 1.50704 * 109.46954 * 269.99802 * 3 2 1 5 5 H 1.08003 * 119.99627 * 359.97438 * 4 3 2 6 6 C 1.37868 * 119.99983 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00343 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99878 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46733 * 60.00133 * 8 6 4 10 10 H 1.48498 * 109.47121 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46995 * 300.00301 * 8 6 4 12 12 C 1.34782 * 119.99640 * 179.97438 * 2 1 3 13 13 O 1.21556 * 119.99662 * 184.44334 * 12 2 1 14 14 C 1.47778 * 120.00117 * 4.44121 * 12 2 1 15 15 C 1.39398 * 120.63615 * 310.80866 * 14 12 2 16 16 N 1.31680 * 120.71067 * 180.26582 * 15 14 12 17 17 C 1.31924 * 122.20560 * 359.73433 * 16 15 14 18 18 C 1.38214 * 121.19879 * 359.97438 * 17 16 15 19 19 C 1.39685 * 119.12422 * 0.02562 * 18 17 16 20 20 C 1.43201 * 120.98439 * 179.97438 * 19 18 17 21 21 N 4.62860 * 120.04695 * 220.63860 * 2 1 3 22 22 H 1.09000 * 109.46823 * 273.04483 * 1 2 3 23 23 H 1.08999 * 109.46860 * 33.04184 * 1 2 3 24 24 H 1.08995 * 109.47145 * 153.04362 * 1 2 3 25 25 H 1.08998 * 109.47314 * 29.99783 * 3 2 1 26 26 H 1.09006 * 109.47056 * 150.00147 * 3 2 1 27 27 H 0.97002 * 120.00038 * 179.97438 * 7 6 4 28 28 H 1.07998 * 119.64679 * 359.97438 * 15 14 12 29 29 H 1.07996 * 119.40552 * 180.02562 * 17 16 15 30 30 H 1.07995 * 120.43733 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1261 2.8777 -1.6728 7 7 3.5535 3.6179 -0.6733 8 14 3.4382 3.4165 -3.4341 9 1 2.1408 3.5933 -4.1348 10 1 4.1806 4.7026 -3.4342 11 1 4.2415 2.3817 -4.1333 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1688 0.0821 14 6 1.4032 -2.4452 -0.0980 15 6 0.3109 -2.7016 0.7292 16 7 -0.3424 -3.8419 0.6463 17 6 -0.0060 -4.7840 -0.2138 18 6 1.0593 -4.6169 -1.0784 19 6 1.7895 -3.4269 -1.0355 20 6 2.9009 -3.2119 -1.9126 21 7 3.7826 -3.0403 -2.6094 22 1 -0.3633 0.0546 1.0262 23 1 -0.3633 0.8615 -0.5603 24 1 -0.3633 -0.9160 -0.4658 25 1 1.6086 2.0284 0.5138 26 1 3.1500 1.1382 0.5138 27 1 4.0304 4.4438 -0.8506 28 1 0.0000 -1.9591 1.4491 29 1 -0.5738 -5.7022 -0.2435 30 1 1.3236 -5.3961 -1.7779 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358461300.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:54 Heat of formation + Delta-G solvation = 41.142970 kcal Electronic energy + Delta-G solvation = -16909.129949 eV Core-core repulsion = 14091.286647 eV Total energy + Delta-G solvation = -2817.843302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79314 -38.61587 -36.54338 -35.03780 -32.93836 -32.74843 -31.61487 -27.94735 -26.29229 -25.13376 -24.28586 -22.66771 -19.89904 -18.82873 -17.16763 -16.72035 -16.56412 -15.50489 -15.39951 -14.82924 -14.45222 -14.30224 -14.01623 -13.40586 -13.17863 -12.93793 -12.87572 -12.47065 -12.21897 -12.10019 -11.79814 -11.28062 -10.97628 -10.64247 -10.27136 -10.08018 -9.95879 -9.74498 -9.41345 -9.13490 -8.48647 -7.83796 -6.10541 -4.15995 0.36625 0.67725 2.71656 2.95922 3.11526 3.29297 3.33886 3.38312 3.55758 3.69142 3.81805 4.15056 4.39592 4.58489 4.65721 4.73259 5.08077 5.24521 5.35435 5.40217 5.51586 5.75048 5.77417 6.11033 6.21717 6.89311 7.30118 7.37521 7.52512 7.57748 7.84477 8.13223 8.16254 8.68980 8.89487 9.49485 10.97566 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.028399 B = 0.006866 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.728123 B = 4076.960337 C = 4598.873570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.588 5.588 3 C 0.245 3.755 4 C -0.532 4.532 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.542 3.458 13 O -0.521 6.521 14 C -0.123 4.123 15 C 0.133 3.867 16 N -0.470 5.470 17 C 0.112 3.888 18 C -0.133 4.133 19 C 0.067 3.933 20 C 0.241 3.759 21 N -0.372 5.372 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.265 0.735 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 -14.483 2.132 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.319 5.319 3 C 0.126 3.874 4 C -0.571 4.571 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.326 3.674 13 O -0.398 6.398 14 C -0.131 4.131 15 C -0.025 4.025 16 N -0.178 5.178 17 C -0.045 4.045 18 C -0.155 4.155 19 C 0.056 3.944 20 C -0.075 4.075 21 N -0.047 5.047 22 H 0.072 0.928 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.190 0.810 29 H 0.187 0.813 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.575 -14.126 1.702 17.150 hybrid contribution 0.538 0.534 -1.299 1.504 sum -9.038 -13.593 0.403 16.328 Atomic orbital electron populations 1.21904 0.81036 1.02955 1.01085 1.48135 1.06485 1.07412 1.69837 1.19401 0.92748 0.77415 0.97793 1.21349 1.37173 1.06524 0.92060 0.92573 1.24903 0.95128 0.96277 0.97515 1.69911 1.38015 1.14346 1.30820 0.86571 0.78482 0.77928 0.84589 1.20126 1.20983 1.20149 1.17907 0.87283 0.83048 0.79185 1.90829 1.12960 1.86588 1.49394 1.21453 0.97759 0.96491 0.97424 1.23136 0.89115 0.94193 0.96039 1.67641 1.29027 1.01150 1.20009 1.22891 0.93668 0.97914 0.90032 1.22200 0.96131 0.96266 1.00917 1.16131 0.90969 0.94448 0.92877 1.25181 0.93496 0.94924 0.93931 1.81245 1.08704 1.05523 1.09240 0.92798 0.90255 0.92212 0.94337 0.93418 0.92518 0.80982 0.81345 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 9.11 59.85 0.54 1.63 16 2 N -0.59 -12.04 2.86 -184.10 -0.53 -12.56 16 3 C 0.24 6.27 5.21 -5.19 -0.03 6.24 16 4 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 7 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.54 11.13 6.80 -12.36 -0.08 11.05 16 13 O -0.52 -13.14 15.72 5.32 0.08 -13.06 16 14 C -0.12 -1.88 4.93 -104.47 -0.51 -2.40 16 15 C 0.13 1.59 8.80 -17.18 -0.15 1.44 16 16 N -0.47 -5.00 10.32 -12.98 -0.13 -5.14 16 17 C 0.11 0.92 11.16 -17.52 -0.20 0.73 16 18 C -0.13 -1.23 9.85 -39.05 -0.38 -1.61 16 19 C 0.07 0.95 5.78 -106.33 -0.62 0.33 16 20 C 0.24 4.23 13.93 -22.44 -0.31 3.91 16 21 N -0.37 -7.47 18.54 41.87 0.78 -6.70 16 22 H 0.05 0.63 7.59 -51.93 -0.39 0.24 16 23 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 24 H 0.06 0.75 5.68 -51.93 -0.30 0.45 16 25 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 26 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.17 1.76 6.60 -52.49 -0.35 1.41 16 29 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 277.63 15.07 4.18 4.18 Total: -1.00 -35.06 277.63 -4.71 -39.77 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: -2.65 Total: -5.64 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -2.16 Total: 7.68 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.85 Total: -50.06 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.06 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -35.06 -4.71 -39.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358461300.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.916 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds