Wall clock time and date at job start Sun Mar 29 2020 23:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.46865 * 2 1 4 4 C 1.36742 * 119.99901 * 233.34525 * 3 2 1 5 5 H 1.07999 * 120.00114 * 235.77087 * 4 3 2 6 6 C 1.39139 * 119.99609 * 55.77288 * 4 3 2 7 7 N 1.31300 * 120.00545 * 39.13100 * 6 4 3 8 8 Si 1.86804 * 119.99645 * 219.13070 * 6 4 3 9 9 H 1.48505 * 109.47031 * 90.00229 * 8 6 4 10 10 H 1.48494 * 109.47094 * 209.99764 * 8 6 4 11 11 H 1.48496 * 109.47107 * 330.00566 * 8 6 4 12 12 C 1.34770 * 119.99895 * 53.34981 * 3 2 1 13 13 O 1.21613 * 120.00187 * 170.01328 * 12 3 2 14 14 C 1.47601 * 120.00382 * 350.28588 * 12 3 2 15 15 C 1.39517 * 120.64468 * 34.51215 * 14 12 3 16 16 N 1.31642 * 120.69589 * 180.02562 * 15 14 12 17 17 C 1.31949 * 122.22513 * 0.02562 * 16 15 14 18 18 C 1.38189 * 121.22472 * 0.02562 * 17 16 15 19 19 C 1.39710 * 119.13340 * 359.67770 * 18 17 16 20 20 C 1.43199 * 120.99293 * 180.29830 * 19 18 17 21 21 N 5.80191 * 72.33607 * 16.25465 * 2 1 3 22 22 H 1.09004 * 109.47008 * 71.50138 * 1 2 3 23 23 H 1.09002 * 109.47129 * 191.50416 * 1 2 3 24 24 H 1.09000 * 109.47064 * 311.50861 * 1 2 3 25 25 H 1.08997 * 109.46968 * 240.00370 * 2 1 3 26 26 H 1.08995 * 109.47127 * 119.99584 * 2 1 3 27 27 H 0.97001 * 120.00193 * 179.97438 * 7 6 4 28 28 H 1.08004 * 119.64685 * 0.02740 * 15 14 12 29 29 H 1.07996 * 119.39040 * 179.97438 * 17 16 15 30 30 H 1.08003 * 120.42871 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.9127 1.7903 -0.9500 5 1 3.8546 2.2269 -0.6526 6 6 2.6092 1.6439 -2.3000 7 7 1.3878 1.8680 -2.7265 8 14 3.9396 1.1284 -3.5058 9 1 3.9691 -0.3529 -3.6069 10 1 3.6498 1.7099 -4.8410 11 1 5.2575 1.6182 -3.0279 12 6 1.5860 2.2488 0.9364 13 8 2.1204 3.3352 1.0519 14 6 0.4679 1.8782 1.8259 15 6 0.3046 0.5595 2.2512 16 7 -0.6925 0.2278 3.0441 17 6 -1.5757 1.1103 3.4709 18 6 -1.4960 2.4396 3.1018 19 6 -0.4550 2.8523 2.2663 20 6 -0.3307 4.2210 1.8642 21 7 -0.2305 5.3074 1.5474 22 1 -0.3633 0.3261 -0.9746 23 1 -0.3633 -1.0070 0.2050 24 1 -0.3633 0.6811 0.7696 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.1764 1.7663 -3.6677 28 1 1.0037 -0.1970 1.9265 29 1 -2.3762 0.7877 4.1201 30 1 -2.2257 3.1512 3.4590 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358484473.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:26 Heat of formation + Delta-G solvation = 89.432192 kcal Electronic energy + Delta-G solvation = -17573.162246 eV Core-core repulsion = 14757.412921 eV Total energy + Delta-G solvation = -2815.749325 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96415 -38.14440 -36.33375 -35.18004 -33.07718 -32.38299 -31.17673 -29.30010 -25.82622 -24.39229 -23.68211 -22.57211 -20.07377 -18.77127 -17.38417 -16.80489 -16.04489 -15.22946 -15.02515 -14.74091 -14.24062 -14.14458 -13.61364 -13.39345 -13.04888 -12.68502 -12.54380 -12.16457 -12.11654 -11.60883 -11.54751 -11.39816 -11.21423 -10.74162 -10.48744 -10.34160 -9.62736 -9.55005 -8.96519 -8.55721 -8.32514 -7.52682 -6.57016 -4.18085 0.75567 1.07576 3.07534 3.11493 3.20174 3.24107 3.33963 3.69818 3.97706 4.10313 4.26248 4.41168 4.61753 4.62784 4.93237 5.07317 5.24242 5.47195 5.62890 5.65566 5.77942 5.86178 6.06241 6.13487 6.34859 6.55884 6.61973 6.86147 7.43350 7.91938 7.96710 8.27005 8.32579 8.99882 9.11444 9.82324 10.42446 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.028788 B = 0.008509 C = 0.007262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.405072 B = 3289.896996 C = 3854.865856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.105 3.895 3 N -0.426 5.426 4 C -0.351 4.351 5 H 0.090 0.910 6 C 0.068 3.932 7 N -0.815 5.815 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.264 1.264 12 C 0.501 3.499 13 O -0.551 6.551 14 C -0.122 4.122 15 C 0.142 3.858 16 N -0.490 5.490 17 C 0.100 3.900 18 C -0.148 4.148 19 C 0.052 3.948 20 C 0.258 3.742 21 N -0.393 5.393 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.271 0.729 28 H 0.184 0.816 29 H 0.162 0.838 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 -7.334 7.638 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.018 4.018 3 N -0.145 5.145 4 C -0.477 4.477 5 H 0.108 0.892 6 C -0.145 4.145 7 N -0.445 5.445 8 Si 0.722 3.278 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.189 1.189 12 C 0.288 3.712 13 O -0.432 6.432 14 C -0.131 4.131 15 C -0.016 4.016 16 N -0.200 5.200 17 C -0.055 4.055 18 C -0.170 4.170 19 C 0.040 3.960 20 C -0.057 4.057 21 N -0.069 5.069 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.201 0.799 29 H 0.179 0.821 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.793 -5.948 7.276 11.040 hybrid contribution 0.398 0.139 -1.062 1.142 sum -5.396 -5.809 6.214 10.074 Atomic orbital electron populations 1.23311 0.97061 1.01862 1.04276 1.21812 0.93425 0.85555 1.01009 1.43261 1.38806 1.06383 1.26094 1.19057 0.97744 1.46698 0.84213 0.89230 1.25557 0.96270 0.94331 0.98299 1.70256 1.21833 1.35909 1.16510 0.86428 0.82701 0.79304 0.79317 1.19852 1.21056 1.18852 1.18341 0.83427 0.85169 0.84238 1.90688 1.57875 1.22855 1.71766 1.21793 0.98405 0.94472 0.98411 1.23744 0.94667 0.94310 0.88913 1.67681 1.03472 1.37605 1.11240 1.22706 0.97052 0.88606 0.97121 1.22014 0.98056 0.98299 0.98672 1.16092 0.96173 0.86029 0.97667 1.25060 0.93808 0.92374 0.94502 1.81088 1.07108 1.12391 1.06302 0.90834 0.92192 0.90013 0.89856 0.92811 0.91916 0.79947 0.82051 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.58 8.26 37.16 0.31 -3.27 16 2 C 0.11 1.97 5.72 -4.04 -0.02 1.95 16 3 N -0.43 -10.16 2.68 -115.98 -0.31 -10.47 16 4 C -0.35 -9.33 8.38 -15.03 -0.13 -9.46 16 5 H 0.09 2.52 8.05 -52.49 -0.42 2.09 16 6 C 0.07 1.74 4.69 -17.44 -0.08 1.66 16 7 N -0.81 -21.58 13.86 55.51 0.77 -20.81 16 8 Si 0.90 19.25 29.68 -169.99 -5.05 14.20 16 9 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 12 C 0.50 12.14 6.97 -12.44 -0.09 12.05 16 13 O -0.55 -15.61 15.43 5.27 0.08 -15.52 16 14 C -0.12 -2.34 4.09 -104.46 -0.43 -2.76 16 15 C 0.14 2.23 6.81 -17.16 -0.12 2.11 16 16 N -0.49 -6.81 10.32 -33.35 -0.34 -7.16 16 17 C 0.10 1.16 11.16 -17.52 -0.20 0.96 16 18 C -0.15 -1.88 9.85 -39.05 -0.38 -2.27 16 19 C 0.05 0.91 5.79 -106.28 -0.61 0.30 16 20 C 0.26 5.33 13.45 -22.47 -0.30 5.03 16 21 N -0.39 -8.85 18.54 41.84 0.78 -8.07 16 22 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.08 1.44 2.73 -93.54 -0.26 1.19 16 25 H 0.08 1.60 7.51 -51.93 -0.39 1.21 16 26 H 0.05 0.83 5.86 -51.93 -0.30 0.52 16 27 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.18 2.63 4.05 -52.48 -0.21 2.42 16 29 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 265.93 15.07 4.01 4.01 Total: -1.00 -32.28 265.93 -4.53 -36.81 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -2.41 Total: 0.71 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -2.05 Total: 6.30 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.89 Total: -46.51 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.08 Total: -15.52 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.05 Total: 14.20 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.28 -4.53 -36.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358484473.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.242 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds