Wall clock time and date at job start Sun Mar 29 2020 22:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.32760 * 2 1 4 4 C 1.54911 * 110.45926 * 122.30244 * 2 1 3 5 5 C 1.55155 * 101.58089 * 155.89445 * 4 2 1 6 6 H 1.09007 * 110.87098 * 82.92663 * 5 4 2 7 7 O 1.42894 * 110.72220 * 206.13205 * 5 4 2 8 8 C 1.54319 * 102.94373 * 324.49837 * 5 4 2 9 9 N 1.47019 * 107.27129 * 22.18838 * 8 5 4 10 10 C 1.34779 * 125.64989 * 181.03709 * 9 8 5 11 11 O 1.21281 * 120.00173 * 180.02562 * 10 9 8 12 12 C 1.50696 * 120.00106 * 0.03130 * 10 9 8 13 13 S 1.80999 * 109.47556 * 179.97438 * 12 10 9 14 14 C 1.76203 * 100.00357 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99402 * 359.97438 * 14 13 12 16 16 C 1.38793 * 120.00295 * 180.02562 * 14 13 12 17 17 N 1.31638 * 119.99959 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00376 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46771 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47054 * 119.99760 * 18 16 14 21 21 H 1.48494 * 109.47355 * 239.99869 * 18 16 14 22 22 H 1.09001 * 109.46953 * 179.30296 * 1 2 3 23 23 H 1.09005 * 109.46996 * 299.29827 * 1 2 3 24 24 H 1.09002 * 109.47149 * 59.29753 * 1 2 3 25 25 H 1.09001 * 110.99939 * 273.96697 * 4 2 1 26 26 H 1.08995 * 111.00422 * 37.81864 * 4 2 1 27 27 H 0.96705 * 114.00580 * 174.97809 * 7 5 4 28 28 H 1.09002 * 109.87998 * 262.77860 * 8 5 4 29 29 H 1.09002 * 109.88621 * 141.61056 * 8 5 4 30 30 H 1.09001 * 109.47127 * 299.99839 * 12 10 9 31 31 H 1.09007 * 109.47322 * 59.99753 * 12 10 9 32 32 H 0.96998 * 120.00113 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0715 -0.7756 1.2268 5 6 3.4803 -1.1971 0.7318 6 1 4.1983 -0.3885 0.8694 7 8 3.9190 -2.3800 1.4028 8 6 3.2509 -1.4739 -0.7689 9 7 2.0431 -0.7373 -1.1690 10 6 1.4958 -0.7357 -2.4007 11 8 0.4939 -0.0879 -2.6183 12 6 2.1288 -1.5390 -3.5075 13 16 1.1680 -1.3337 -5.0276 14 6 2.1039 -2.3503 -6.1209 15 1 2.9828 -2.8644 -5.7607 16 6 1.7124 -2.4896 -7.4452 17 7 0.6414 -1.8626 -7.8843 18 14 2.7049 -3.5667 -8.6044 19 1 3.8534 -4.1566 -7.8705 20 1 1.8420 -4.6552 -9.1295 21 1 3.2082 -2.7453 -9.7344 22 1 -0.3633 -1.0276 -0.0125 23 1 -0.3633 0.5029 0.8963 24 1 -0.3633 0.5247 -0.8836 25 1 2.1421 -0.1263 2.0994 26 1 1.4550 -1.6487 1.4402 27 1 4.7595 -2.7290 1.0758 28 1 3.1042 -2.5418 -0.9307 29 1 4.1069 -1.1235 -1.3457 30 1 3.1485 -1.1905 -3.6720 31 1 2.1455 -2.5925 -3.2281 32 1 0.3679 -1.9597 -8.8098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384998028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:21 Heat of formation + Delta-G solvation = -84.792664 kcal Electronic energy + Delta-G solvation = -15686.922901 eV Core-core repulsion = 12966.769820 eV Total energy + Delta-G solvation = -2720.153081 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.13767 -37.84234 -35.70096 -32.43959 -32.22743 -30.11828 -28.66754 -25.87110 -25.48509 -22.68216 -21.23797 -19.13043 -17.69366 -17.44249 -16.83895 -16.09938 -15.10995 -14.81617 -14.47367 -14.40687 -13.96441 -13.48433 -13.13408 -12.97363 -12.58781 -12.35227 -12.05812 -11.87400 -11.66924 -11.18974 -11.07833 -11.00741 -10.94845 -10.76551 -10.39442 -9.81255 -9.16730 -9.08342 -8.53132 -8.24284 -6.51215 -6.22814 -3.93432 2.85117 3.04490 3.20782 3.24543 3.30129 3.56277 3.91043 4.18936 4.26151 4.34697 4.76514 4.98692 5.06579 5.12445 5.14059 5.34501 5.47517 5.50558 5.62028 5.62772 5.71097 5.82606 5.88900 6.11925 6.14304 6.30998 6.63761 7.29240 7.58645 7.66009 8.34323 8.56014 9.22608 10.84733 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036476 B = 0.005360 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.435754 B = 5223.024812 C = 5893.115005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 H 0.075 0.925 4 C -0.122 4.122 5 C 0.092 3.908 6 H 0.075 0.925 7 O -0.558 6.558 8 C 0.070 3.930 9 N -0.621 5.621 10 C 0.551 3.449 11 O -0.510 6.510 12 C -0.148 4.148 13 S -0.060 6.060 14 C -0.535 4.535 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.381 0.619 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.012 1.118 17.277 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.093 0.907 4 C -0.160 4.160 5 C 0.032 3.968 6 H 0.093 0.907 7 O -0.363 6.363 8 C -0.054 4.054 9 N -0.360 5.360 10 C 0.340 3.660 11 O -0.384 6.384 12 C -0.298 4.298 13 S 0.167 5.833 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.746 3.254 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.229 0.771 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.812 2.208 17.043 17.846 hybrid contribution 2.463 -1.593 -0.854 3.056 sum 7.275 0.614 16.188 17.758 Atomic orbital electron populations 1.22157 0.93395 1.03063 1.03556 1.21847 0.95883 0.95281 0.83646 0.90724 1.22905 0.94537 1.01062 0.97485 1.22828 0.96529 0.87465 0.89938 0.90703 1.86548 1.43834 1.43524 1.62382 1.22743 0.88634 0.98042 0.95973 1.48476 1.28262 1.49777 1.09503 1.19991 0.83686 0.81249 0.81124 1.90650 1.24379 1.42471 1.80889 1.23527 1.04477 1.01800 1.00026 1.85383 1.36308 1.64271 0.97368 1.22899 1.14772 1.33537 0.97093 0.90922 1.24992 0.95346 0.95949 0.97290 1.70032 1.23162 1.40619 1.16472 0.86109 0.79590 0.79693 0.80048 1.19637 1.20540 1.20545 0.92502 0.92285 0.89046 0.89485 0.89489 0.77092 0.90459 0.91054 0.89423 0.89395 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.66 37.16 0.32 -1.86 16 2 C 0.14 1.68 3.76 -66.42 -0.25 1.43 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.12 -1.18 6.23 -24.58 -0.15 -1.34 16 5 C 0.09 0.83 4.33 -24.90 -0.11 0.72 16 6 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 7 O -0.56 -4.93 13.39 -35.23 -0.47 -5.41 16 8 C 0.07 0.78 6.26 -3.07 -0.02 0.76 16 9 N -0.62 -9.17 3.24 -163.05 -0.53 -9.70 16 10 C 0.55 10.69 7.65 -10.99 -0.08 10.61 16 11 O -0.51 -11.55 13.54 5.56 0.08 -11.47 16 12 C -0.15 -3.07 5.35 36.00 0.19 -2.87 16 13 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 14 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 15 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 18 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 1.50 5.99 -51.93 -0.31 1.19 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.93 8.06 -51.93 -0.42 0.51 16 27 H 0.38 1.76 9.11 45.56 0.42 2.17 16 28 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 31 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 284.53 15.07 4.29 4.29 Total: -1.00 -34.53 284.53 -6.70 -41.23 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.66 Total: -0.45 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 0.10 Total: -5.55 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.21 Total: -35.18 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.40 Total: -16.88 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.53 -6.70 -41.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384998028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.564 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds