Wall clock time and date at job start Sun Mar 29 2020 22:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.32760 * 2 1 4 4 C 1.54911 * 110.45926 * 122.30244 * 2 1 3 5 5 C 1.55155 * 101.58089 * 155.89445 * 4 2 1 6 6 H 1.09007 * 110.87098 * 82.92663 * 5 4 2 7 7 O 1.42894 * 110.72220 * 206.13205 * 5 4 2 8 8 C 1.54319 * 102.94373 * 324.49837 * 5 4 2 9 9 N 1.47019 * 107.27129 * 22.18838 * 8 5 4 10 10 C 1.34779 * 125.64989 * 181.03709 * 9 8 5 11 11 O 1.21281 * 120.00173 * 180.02562 * 10 9 8 12 12 C 1.50696 * 120.00106 * 0.03130 * 10 9 8 13 13 S 1.80999 * 109.47556 * 179.97438 * 12 10 9 14 14 C 1.76203 * 100.00357 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99402 * 359.97438 * 14 13 12 16 16 C 1.38793 * 120.00295 * 180.02562 * 14 13 12 17 17 N 1.31638 * 119.99959 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00376 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46771 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47054 * 119.99760 * 18 16 14 21 21 H 1.48494 * 109.47355 * 239.99869 * 18 16 14 22 22 H 1.09001 * 109.46953 * 179.30296 * 1 2 3 23 23 H 1.09005 * 109.46996 * 299.29827 * 1 2 3 24 24 H 1.09002 * 109.47149 * 59.29753 * 1 2 3 25 25 H 1.09001 * 110.99939 * 273.96697 * 4 2 1 26 26 H 1.08995 * 111.00422 * 37.81864 * 4 2 1 27 27 H 0.96705 * 114.00580 * 174.97809 * 7 5 4 28 28 H 1.09002 * 109.87998 * 262.77860 * 8 5 4 29 29 H 1.09002 * 109.88621 * 141.61056 * 8 5 4 30 30 H 1.09001 * 109.47127 * 299.99839 * 12 10 9 31 31 H 1.09007 * 109.47322 * 59.99753 * 12 10 9 32 32 H 0.96998 * 120.00113 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0715 -0.7756 1.2268 5 6 3.4803 -1.1971 0.7318 6 1 4.1983 -0.3885 0.8694 7 8 3.9190 -2.3800 1.4028 8 6 3.2509 -1.4739 -0.7689 9 7 2.0431 -0.7373 -1.1690 10 6 1.4958 -0.7357 -2.4007 11 8 0.4939 -0.0879 -2.6183 12 6 2.1288 -1.5390 -3.5075 13 16 1.1680 -1.3337 -5.0276 14 6 2.1039 -2.3503 -6.1209 15 1 2.9828 -2.8644 -5.7607 16 6 1.7124 -2.4896 -7.4452 17 7 0.6414 -1.8626 -7.8843 18 14 2.7049 -3.5667 -8.6044 19 1 3.8534 -4.1566 -7.8705 20 1 1.8420 -4.6552 -9.1295 21 1 3.2082 -2.7453 -9.7344 22 1 -0.3633 -1.0276 -0.0125 23 1 -0.3633 0.5029 0.8963 24 1 -0.3633 0.5247 -0.8836 25 1 2.1421 -0.1263 2.0994 26 1 1.4550 -1.6487 1.4402 27 1 4.7595 -2.7290 1.0758 28 1 3.1042 -2.5418 -0.9307 29 1 4.1069 -1.1235 -1.3457 30 1 3.1485 -1.1905 -3.6720 31 1 2.1455 -2.5925 -3.2281 32 1 0.3679 -1.9597 -8.8098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384998028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:21 Heat of formation + Delta-G solvation = -111.371326 kcal Electronic energy + Delta-G solvation = -15688.075439 eV Core-core repulsion = 12966.769820 eV Total energy + Delta-G solvation = -2721.305618 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.30993 -38.98290 -36.62146 -34.60623 -33.43918 -31.06934 -30.16419 -27.68961 -26.81852 -23.78516 -22.09410 -20.53068 -19.52027 -18.30282 -17.96431 -17.34863 -16.90158 -16.56029 -16.02299 -15.44477 -15.20880 -14.70084 -14.37544 -14.27564 -14.08164 -13.50551 -13.29281 -13.17530 -12.96910 -12.91978 -12.63664 -12.54224 -12.20828 -11.75696 -11.70412 -11.17447 -11.09387 -10.63042 -10.30654 -9.73026 -8.69994 -8.36692 -6.15497 1.21944 1.40725 1.43462 1.54773 1.55935 2.02901 2.25481 2.97640 3.12940 3.26602 3.46865 3.52360 3.91401 4.06087 4.10502 4.22291 4.31129 4.37487 4.43367 4.63589 4.69633 4.74658 4.90979 4.97595 5.19291 5.22554 5.39725 5.53031 6.17918 6.35541 6.86609 7.04535 7.11701 8.72980 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036476 B = 0.005360 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.435754 B = 5223.024812 C = 5893.115005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 H 0.089 0.911 4 C -0.115 4.115 5 C 0.105 3.895 6 H 0.103 0.897 7 O -0.570 6.570 8 C 0.060 3.940 9 N -0.615 5.615 10 C 0.546 3.454 11 O -0.554 6.554 12 C -0.121 4.121 13 S -0.148 6.148 14 C -0.547 4.547 15 H 0.082 0.918 16 C 0.014 3.986 17 N -0.912 5.912 18 Si 1.001 2.999 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.272 1.272 22 H 0.041 0.959 23 H 0.089 0.911 24 H 0.054 0.946 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.400 0.600 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 0.353 18.880 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.107 0.893 4 C -0.153 4.153 5 C 0.045 3.955 6 H 0.120 0.880 7 O -0.378 6.378 8 C -0.063 4.063 9 N -0.351 5.351 10 C 0.335 3.665 11 O -0.432 6.432 12 C -0.273 4.273 13 S 0.079 5.921 14 C -0.695 4.695 15 H 0.100 0.900 16 C -0.191 4.191 17 N -0.548 5.548 18 Si 0.822 3.178 19 H -0.180 1.180 20 H -0.199 1.199 21 H -0.198 1.198 22 H 0.060 0.940 23 H 0.108 0.892 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.093 0.907 27 H 0.251 0.749 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.360 1.427 18.700 20.147 hybrid contribution 1.706 -1.345 -1.202 2.483 sum 9.066 0.082 17.497 19.707 Atomic orbital electron populations 1.22078 0.94548 1.01889 1.03293 1.22122 0.95140 0.96307 0.83692 0.89279 1.22876 0.94723 1.00773 0.96895 1.22778 0.96651 0.88346 0.87718 0.87961 1.86513 1.45359 1.43581 1.62362 1.23093 0.87377 0.97548 0.98281 1.48437 1.28897 1.49287 1.08502 1.19718 0.83410 0.81030 0.82385 1.90647 1.26242 1.44359 1.81953 1.23326 1.03895 1.03039 0.96990 1.85552 1.39441 1.65063 1.02018 1.23223 1.14972 1.33607 0.97650 0.90021 1.26139 0.96433 0.97307 0.99189 1.70191 1.25141 1.42345 1.17126 0.84883 0.78096 0.77484 0.77338 1.18030 1.19891 1.19780 0.94002 0.89204 0.92669 0.86587 0.90651 0.74883 0.90693 0.89408 0.87633 0.88128 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 8.66 71.98 0.62 -3.59 16 2 C 0.13 2.94 3.76 45.47 0.17 3.11 16 3 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.11 -1.85 6.23 31.99 0.20 -1.65 16 5 C 0.10 1.47 4.33 31.78 0.14 1.61 16 6 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 7 O -0.57 -7.95 13.39 -148.98 -1.99 -9.95 16 8 C 0.06 1.16 6.26 86.73 0.54 1.71 16 9 N -0.61 -17.33 3.24 -788.16 -2.56 -19.88 16 10 C 0.55 21.37 7.65 87.66 0.67 22.04 16 11 O -0.55 -26.14 13.54 -3.03 -0.04 -26.18 16 12 C -0.12 -5.04 5.35 71.23 0.38 -4.65 16 13 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 14 C -0.55 -31.54 9.50 67.95 0.65 -30.89 16 15 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 16 C 0.01 0.80 5.49 84.85 0.47 1.27 16 17 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 18 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.05 1.88 5.99 -2.39 -0.01 1.87 16 25 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.43 8.06 -2.39 -0.02 1.41 16 27 H 0.40 2.17 9.11 -74.05 -0.67 1.49 16 28 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 31 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -77.69 284.53 0.84 -76.85 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.44 Total: 10.05 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 3.84 Total: -11.05 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -2.27 Total: -75.90 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -2.04 Total: -36.13 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -77.69 0.84 -76.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384998028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.523 kcal (2) G-P(sol) polarization free energy of solvation -77.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds