Wall clock time and date at job start Sun Mar 29 2020 22:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42100 * 109.46805 * 2 1 4 4 C 1.81395 * 103.00055 * 243.60604 * 2 1 3 5 5 C 1.52998 * 112.85239 * 306.39179 * 4 2 1 6 6 N 1.46503 * 109.47301 * 292.21093 * 5 4 2 7 7 C 1.34772 * 120.00279 * 184.25582 * 6 5 4 8 8 O 1.21681 * 120.00239 * 0.02562 * 7 6 5 9 9 C 1.46382 * 119.99830 * 180.02562 * 7 6 5 10 10 H 1.07997 * 119.99649 * 359.97438 * 9 7 6 11 11 C 1.40048 * 119.99668 * 180.02562 * 9 7 6 12 12 N 1.30668 * 119.99993 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99672 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47286 * 59.99825 * 13 11 9 15 15 H 1.48496 * 109.47029 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47081 * 299.99708 * 13 11 9 17 17 C 1.53779 * 113.61553 * 175.19220 * 4 2 1 18 18 C 1.53775 * 87.17485 * 270.76076 * 17 4 2 19 19 C 1.53784 * 113.68936 * 77.65959 * 4 2 1 20 20 H 1.09003 * 109.46713 * 181.62536 * 1 2 3 21 21 H 1.08999 * 109.47321 * 301.62025 * 1 2 3 22 22 H 1.09000 * 109.46803 * 61.62714 * 1 2 3 23 23 H 1.09005 * 109.47440 * 52.20750 * 5 4 2 24 24 H 1.08997 * 109.47306 * 172.20985 * 5 4 2 25 25 H 0.97006 * 119.99420 * 4.25715 * 6 5 4 26 26 H 0.97000 * 119.99567 * 180.02562 * 12 11 9 27 27 H 1.09003 * 113.61070 * 25.35352 * 17 4 2 28 28 H 1.08994 * 113.61728 * 156.16857 * 17 4 2 29 29 H 1.09004 * 113.61657 * 89.15329 * 18 17 4 30 30 H 1.09001 * 113.61942 * 220.06265 * 18 17 4 31 31 H 1.08999 * 113.61407 * 203.67838 * 19 4 2 32 32 H 1.08997 * 113.61399 * 334.49111 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2221 -0.7857 -1.5832 5 6 1.5408 -2.1433 -1.7659 6 7 2.1008 -3.1032 -0.8112 7 6 1.7116 -4.3931 -0.8456 8 8 0.8954 -4.7606 -1.6698 9 6 2.2707 -5.3519 0.1087 10 1 2.9955 -5.0258 0.8400 11 6 1.8667 -6.6924 0.0726 12 7 0.9902 -7.0869 -0.8125 13 14 2.5808 -7.9162 1.2899 14 1 2.2609 -7.4821 2.6736 15 1 1.9942 -9.2581 1.0445 16 1 4.0546 -7.9810 1.1197 17 6 3.7288 -0.8063 -1.8905 18 6 3.5328 0.5621 -2.5639 19 6 2.0679 0.1489 -2.7947 20 1 -0.3633 -1.0273 0.0292 21 1 -0.3634 0.5388 0.8751 22 1 -0.3633 0.4884 -0.9042 23 1 0.4700 -2.0391 -1.5904 24 1 1.7093 -2.5008 -2.7817 25 1 2.7517 -2.8103 -0.1543 26 1 0.7101 -8.0153 -0.8372 27 1 4.3565 -0.7690 -1.0001 28 1 4.0225 -1.5955 -2.5825 29 1 3.6465 1.4048 -1.8818 30 1 4.1039 0.6816 -3.4846 31 1 1.9072 -0.3782 -3.7351 32 1 1.3536 0.9565 -2.6349 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393726519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:08 Heat of formation + Delta-G solvation = -57.095993 kcal Electronic energy + Delta-G solvation = -16107.114869 eV Core-core repulsion = 13388.162805 eV Total energy + Delta-G solvation = -2718.952063 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.01862 -36.98634 -35.56290 -33.07806 -32.19426 -29.14812 -27.85011 -25.87624 -25.54313 -22.55889 -20.02794 -19.64634 -17.48167 -16.91307 -16.05454 -15.39427 -15.09891 -14.55864 -14.17957 -14.04686 -13.85007 -13.55697 -12.95582 -12.48881 -12.37434 -12.31530 -11.95529 -11.77403 -11.42913 -11.17671 -11.14596 -10.88992 -10.51127 -10.40050 -10.25808 -10.13773 -9.71933 -8.85188 -8.10381 -7.64005 -7.53024 -6.19406 -4.64900 1.63285 2.67958 3.16046 3.21540 3.22839 3.84531 4.08535 4.36300 4.58578 4.63614 4.84057 4.91369 5.15602 5.19173 5.37765 5.61697 5.69758 5.74468 5.78088 5.90416 5.95312 6.01126 6.09790 6.38942 6.42367 6.47220 7.43157 7.90472 8.04946 8.31490 9.02070 9.51512 10.58989 10.77362 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.035378 B = 0.006022 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.261205 B = 4648.783421 C = 4772.848186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.483 4.483 2 S 1.262 4.738 3 O -0.856 6.856 4 C -0.414 4.414 5 C 0.174 3.826 6 N -0.765 5.765 7 C 0.555 3.445 8 O -0.581 6.581 9 C -0.545 4.545 10 H 0.070 0.930 11 C 0.088 3.912 12 N -0.769 5.769 13 Si 0.907 3.093 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.268 1.268 17 C -0.088 4.088 18 C -0.154 4.154 19 C -0.111 4.111 20 H 0.121 0.879 21 H 0.102 0.898 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.381 0.619 26 H 0.268 0.732 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 10.239 2.229 10.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 1.460 4.540 3 O -0.852 6.852 4 C -0.512 4.512 5 C 0.047 3.953 6 N -0.422 5.422 7 C 0.360 3.640 8 O -0.464 6.464 9 C -0.582 4.582 10 H 0.088 0.912 11 C -0.132 4.132 12 N -0.398 5.398 13 Si 0.731 3.269 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.127 4.127 18 C -0.192 4.192 19 C -0.150 4.150 20 H 0.140 0.860 21 H 0.120 0.880 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.213 0.787 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.974 10.177 2.213 10.831 hybrid contribution -0.345 0.593 -0.949 1.171 sum 2.629 10.770 1.264 11.158 Atomic orbital electron populations 1.27577 1.20984 1.08972 1.06609 1.70611 0.86929 0.97737 0.98694 1.93014 1.73698 1.37242 1.81209 1.29338 1.03804 1.04692 1.13401 1.20442 0.95746 0.83993 0.95088 1.46138 1.49095 1.09620 1.37337 1.18204 0.81632 0.79432 0.84774 1.90609 1.36818 1.77788 1.41213 1.20864 1.26777 0.92901 1.17677 0.91197 1.25702 0.93609 0.98843 0.95038 1.70008 1.23798 1.16614 1.29348 0.86454 0.79814 0.79361 0.81233 1.19198 1.20706 1.19311 1.22454 0.91496 0.97674 1.01028 1.23105 0.96226 0.98311 1.01518 1.22793 0.97554 0.97174 0.97457 0.86040 0.87961 0.90086 0.93180 0.92511 0.78709 0.92081 0.91023 0.88834 0.88796 0.91320 0.89478 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -5.80 10.05 101.05 1.02 -4.79 16 2 S 1.26 15.96 13.14 -107.50 -1.41 14.55 16 3 O -0.86 -14.44 16.24 -35.23 -0.57 -15.01 16 4 C -0.41 -5.72 0.77 -89.81 -0.07 -5.79 16 5 C 0.17 3.00 4.91 -4.04 -0.02 2.98 16 6 N -0.77 -15.04 5.32 -61.72 -0.33 -15.37 16 7 C 0.56 14.65 7.75 -12.99 -0.10 14.55 16 8 O -0.58 -17.94 15.02 5.21 0.08 -17.87 16 9 C -0.55 -14.40 9.54 -35.63 -0.34 -14.74 16 10 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 11 C 0.09 2.34 5.50 -17.37 -0.10 2.25 16 12 N -0.77 -22.31 11.83 55.55 0.66 -21.65 16 13 Si 0.91 19.24 29.56 -169.99 -5.02 14.22 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 15 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 17 C -0.09 -1.15 6.97 -25.92 -0.18 -1.33 16 18 C -0.15 -2.01 7.68 -25.83 -0.20 -2.20 16 19 C -0.11 -1.50 7.15 -25.83 -0.18 -1.68 16 20 H 0.12 1.46 7.26 -51.92 -0.38 1.09 16 21 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 22 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 23 H 0.05 0.88 6.63 -51.93 -0.34 0.54 16 24 H 0.06 1.10 8.02 -51.93 -0.42 0.68 16 25 H 0.38 6.23 8.25 -40.82 -0.34 5.89 16 26 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 27 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.09 1.36 6.75 -51.93 -0.35 1.00 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.14 8.01 -51.93 -0.42 0.72 16 32 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 282.52 15.07 4.26 4.26 Total: -1.00 -35.34 282.52 -6.83 -42.18 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.32 Total: 5.44 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.17 Total: -10.75 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.33 Total: -37.02 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.49 Total: -32.88 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 15.96 SS G_CDS: -1.41 Total: 14.55 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -35.34 -6.83 -42.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393726519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.921 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds