Wall clock time and date at job start Sun Mar 29 2020 22:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42100 * 109.46805 * 2 1 4 4 C 1.81395 * 103.00055 * 243.60604 * 2 1 3 5 5 C 1.52998 * 112.85239 * 306.39179 * 4 2 1 6 6 N 1.46503 * 109.47301 * 292.21093 * 5 4 2 7 7 C 1.34772 * 120.00279 * 184.25582 * 6 5 4 8 8 O 1.21681 * 120.00239 * 0.02562 * 7 6 5 9 9 C 1.46382 * 119.99830 * 180.02562 * 7 6 5 10 10 H 1.07997 * 119.99649 * 359.97438 * 9 7 6 11 11 C 1.40048 * 119.99668 * 180.02562 * 9 7 6 12 12 N 1.30668 * 119.99993 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99672 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47286 * 59.99825 * 13 11 9 15 15 H 1.48496 * 109.47029 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47081 * 299.99708 * 13 11 9 17 17 C 1.53779 * 113.61553 * 175.19220 * 4 2 1 18 18 C 1.53775 * 87.17485 * 270.76076 * 17 4 2 19 19 C 1.53784 * 113.68936 * 77.65959 * 4 2 1 20 20 H 1.09003 * 109.46713 * 181.62536 * 1 2 3 21 21 H 1.08999 * 109.47321 * 301.62025 * 1 2 3 22 22 H 1.09000 * 109.46803 * 61.62714 * 1 2 3 23 23 H 1.09005 * 109.47440 * 52.20750 * 5 4 2 24 24 H 1.08997 * 109.47306 * 172.20985 * 5 4 2 25 25 H 0.97006 * 119.99420 * 4.25715 * 6 5 4 26 26 H 0.97000 * 119.99567 * 180.02562 * 12 11 9 27 27 H 1.09003 * 113.61070 * 25.35352 * 17 4 2 28 28 H 1.08994 * 113.61728 * 156.16857 * 17 4 2 29 29 H 1.09004 * 113.61657 * 89.15329 * 18 17 4 30 30 H 1.09001 * 113.61942 * 220.06265 * 18 17 4 31 31 H 1.08999 * 113.61407 * 203.67838 * 19 4 2 32 32 H 1.08997 * 113.61399 * 334.49111 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2221 -0.7857 -1.5832 5 6 1.5408 -2.1433 -1.7659 6 7 2.1008 -3.1032 -0.8112 7 6 1.7116 -4.3931 -0.8456 8 8 0.8954 -4.7606 -1.6698 9 6 2.2707 -5.3519 0.1087 10 1 2.9955 -5.0258 0.8400 11 6 1.8667 -6.6924 0.0726 12 7 0.9902 -7.0869 -0.8125 13 14 2.5808 -7.9162 1.2899 14 1 2.2609 -7.4821 2.6736 15 1 1.9942 -9.2581 1.0445 16 1 4.0546 -7.9810 1.1197 17 6 3.7288 -0.8063 -1.8905 18 6 3.5328 0.5621 -2.5639 19 6 2.0679 0.1489 -2.7947 20 1 -0.3633 -1.0273 0.0292 21 1 -0.3634 0.5388 0.8751 22 1 -0.3633 0.4884 -0.9042 23 1 0.4700 -2.0391 -1.5904 24 1 1.7093 -2.5008 -2.7817 25 1 2.7517 -2.8103 -0.1543 26 1 0.7101 -8.0153 -0.8372 27 1 4.3565 -0.7690 -1.0001 28 1 4.0225 -1.5955 -2.5825 29 1 3.6465 1.4048 -1.8818 30 1 4.1039 0.6816 -3.4846 31 1 1.9072 -0.3782 -3.7351 32 1 1.3536 0.9565 -2.6349 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393726519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:08 Heat of formation + Delta-G solvation = -84.124784 kcal Electronic energy + Delta-G solvation = -16108.286925 eV Core-core repulsion = 13388.162805 eV Total energy + Delta-G solvation = -2720.124120 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.27982 -38.83478 -36.82725 -34.89226 -34.17819 -30.35200 -29.33252 -27.58995 -26.69063 -23.92536 -21.59372 -21.09234 -19.24602 -18.11307 -17.35724 -17.19885 -16.45592 -15.93597 -15.72149 -15.46097 -15.20841 -14.80491 -14.37764 -14.14055 -13.54715 -13.44745 -13.42715 -13.18817 -12.83046 -12.75217 -12.58416 -12.47461 -12.28144 -12.00127 -11.51340 -11.38535 -10.88378 -10.80649 -9.75239 -9.41794 -9.14806 -8.18345 -6.72422 0.55667 1.50153 1.52625 1.60731 1.63662 2.33485 2.58933 2.72485 3.03221 3.52260 3.59519 3.76881 3.77344 3.85488 4.19815 4.36443 4.44357 4.61053 4.67051 4.71929 4.87109 4.89263 4.95035 5.11196 5.16354 5.34927 5.44922 6.01466 6.34238 6.39967 6.99575 7.70687 8.61844 8.79512 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.035378 B = 0.006022 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.261205 B = 4648.783421 C = 4772.848186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.486 4.486 2 S 1.304 4.696 3 O -0.892 6.892 4 C -0.413 4.413 5 C 0.180 3.820 6 N -0.746 5.746 7 C 0.542 3.458 8 O -0.635 6.635 9 C -0.569 4.569 10 H 0.097 0.903 11 C 0.030 3.970 12 N -0.826 5.826 13 Si 0.992 3.008 14 H -0.251 1.251 15 H -0.283 1.283 16 H -0.256 1.256 17 C -0.089 4.089 18 C -0.148 4.148 19 C -0.114 4.114 20 H 0.121 0.879 21 H 0.120 0.880 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.034 0.966 25 H 0.400 0.600 26 H 0.271 0.729 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 10.566 3.817 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 1.503 4.497 3 O -0.888 6.888 4 C -0.510 4.510 5 C 0.054 3.946 6 N -0.402 5.402 7 C 0.346 3.654 8 O -0.523 6.523 9 C -0.605 4.605 10 H 0.115 0.885 11 C -0.185 4.185 12 N -0.456 5.456 13 Si 0.812 3.188 14 H -0.174 1.174 15 H -0.208 1.208 16 H -0.180 1.180 17 C -0.127 4.127 18 C -0.185 4.185 19 C -0.153 4.153 20 H 0.140 0.860 21 H 0.138 0.862 22 H 0.097 0.903 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.235 0.765 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.237 10.568 3.819 12.009 hybrid contribution -0.778 0.570 -1.482 1.768 sum 3.459 11.138 2.337 11.894 Atomic orbital electron populations 1.27583 1.20147 1.09313 1.07441 1.70249 0.86820 0.95884 0.96775 1.92947 1.75098 1.39176 1.81543 1.29338 1.04338 1.02666 1.14696 1.20389 0.95919 0.85043 0.93227 1.45690 1.48642 1.08179 1.37676 1.18539 0.81136 0.81403 0.84284 1.90571 1.39146 1.79378 1.43185 1.21461 1.27304 0.93552 1.18231 0.88536 1.26916 0.93480 1.01226 0.96870 1.70194 1.25984 1.17354 1.32021 0.85147 0.79189 0.75855 0.78599 1.17440 1.20795 1.17981 1.22497 0.90900 0.97575 1.01760 1.23022 0.95834 0.97704 1.01957 1.22838 0.98148 0.96976 0.97315 0.85999 0.86182 0.90274 0.93483 0.94763 0.76469 0.91884 0.89243 0.89340 0.89843 0.89785 0.89269 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -10.87 10.05 113.37 1.14 -9.73 16 2 S 1.30 30.74 13.14 -56.49 -0.74 30.00 16 3 O -0.89 -28.58 16.24 -148.98 -2.42 -31.00 16 4 C -0.41 -10.91 0.77 -10.27 -0.01 -10.92 16 5 C 0.18 6.19 4.91 86.38 0.42 6.61 16 6 N -0.75 -28.86 5.32 -467.41 -2.49 -31.35 16 7 C 0.54 28.83 7.75 86.36 0.67 29.50 16 8 O -0.64 -40.38 15.02 -4.29 -0.06 -40.45 16 9 C -0.57 -29.66 9.54 24.83 0.24 -29.42 16 10 H 0.10 4.34 7.85 -2.91 -0.02 4.32 16 11 C 0.03 1.58 5.50 85.31 0.47 2.05 16 12 N -0.83 -48.86 11.83 21.84 0.26 -48.60 16 13 Si 0.99 38.68 29.56 68.60 2.03 40.71 16 14 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 15 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 16 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 17 C -0.09 -2.17 6.97 31.12 0.22 -1.95 16 18 C -0.15 -3.60 7.68 31.18 0.24 -3.36 16 19 C -0.11 -2.95 7.15 31.18 0.22 -2.73 16 20 H 0.12 2.78 7.26 -2.39 -0.02 2.76 16 21 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.66 6.63 -2.38 -0.02 1.64 16 24 H 0.03 1.35 8.02 -2.39 -0.02 1.33 16 25 H 0.40 12.39 8.25 -92.70 -0.77 11.63 16 26 H 0.27 14.70 8.29 -92.71 -0.77 13.93 16 27 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 28 H 0.09 2.28 8.10 -2.39 -0.02 2.26 16 29 H 0.08 2.27 6.75 -2.39 -0.02 2.25 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.27 8.01 -2.39 -0.02 2.25 16 32 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -76.86 282.52 0.54 -76.32 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.36 Total: 24.32 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 3.61 Total: -19.95 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.23 Total: -79.95 kcal Atomic # 8 Polarization: -68.96 SS G_CDS: -2.48 Total: -71.44 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 16 Polarization: 30.74 SS G_CDS: -0.74 Total: 30.00 kcal Total: -76.86 0.54 -76.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393726519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.807 kcal (2) G-P(sol) polarization free energy of solvation -76.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds