Wall clock time and date at job start Sun Mar 29 2020 23:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38745 * 120.32416 * 2 1 4 4 C 1.38464 * 118.49726 * 180.22031 * 3 2 1 5 5 C 1.39259 * 119.07247 * 359.52473 * 4 3 2 6 6 C 1.48483 * 119.71871 * 180.25714 * 5 4 3 7 7 N 1.30720 * 126.40849 * 359.68290 * 6 5 4 8 8 O 1.21294 * 110.10241 * 179.86999 * 7 6 5 9 9 C 1.33673 * 110.01999 * 0.40275 * 8 7 6 10 10 C 1.50698 * 126.44309 * 179.72491 * 9 8 7 11 11 C 1.50693 * 109.47621 * 270.02819 * 10 9 8 12 12 H 1.07999 * 119.99868 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00474 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99689 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00125 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47144 * 59.99895 * 15 13 11 17 17 H 1.48503 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46865 * 299.99570 * 15 13 11 19 19 N 1.30982 * 107.11375 * 359.75483 * 9 8 7 20 20 N 1.32611 * 120.55863 * 0.22955 * 5 4 3 21 21 C 1.31708 * 121.63252 * 0.02858 * 20 5 4 22 22 H 1.08998 * 109.46814 * 270.26135 * 1 2 3 23 23 H 1.09001 * 109.46963 * 30.25585 * 1 2 3 24 24 H 1.08991 * 109.47161 * 150.26228 * 1 2 3 25 25 H 1.07998 * 120.74802 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.46591 * 179.80676 * 4 3 2 27 27 H 1.09000 * 109.47023 * 30.03316 * 10 9 8 28 28 H 1.09011 * 109.46823 * 150.02650 * 10 9 8 29 29 H 0.96998 * 120.00254 * 179.97438 * 14 13 11 30 30 H 1.08003 * 119.55442 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2075 1.1976 0.0000 4 6 3.5914 1.1535 -0.0047 5 6 4.2290 -0.0846 0.0009 6 6 5.7124 -0.1486 0.0018 7 7 6.5330 0.8689 -0.0081 8 8 7.6813 0.4785 -0.0015 9 6 7.7103 -0.8579 0.0048 10 6 8.9418 -1.7265 0.0081 11 6 9.3519 -2.0222 -1.4115 12 1 8.7779 -1.6216 -2.2339 13 6 10.4592 -2.8051 -1.6604 14 7 11.1578 -3.2934 -0.6589 15 14 10.9679 -3.1711 -3.4201 16 1 11.2629 -1.8978 -4.1250 17 1 12.1813 -4.0272 -3.4167 18 1 9.8641 -3.8787 -4.1174 19 7 6.4672 -1.2704 0.0068 20 7 3.5224 -1.2068 0.0060 21 6 2.2054 -1.1939 0.0054 22 1 -0.3633 0.0047 1.0277 23 1 -0.3633 0.8877 -0.5178 24 1 -0.3633 -0.8922 -0.5097 25 1 1.6851 2.1428 0.0004 26 1 4.1684 2.0665 -0.0080 27 1 9.7518 -1.2065 0.5196 28 1 8.7257 -2.6610 0.5261 29 1 11.9366 -3.8445 -0.8339 30 1 1.6635 -2.1281 0.0092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400571784.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:55 Heat of formation + Delta-G solvation = 91.418017 kcal Electronic energy + Delta-G solvation = -16232.275610 eV Core-core repulsion = 13416.612397 eV Total energy + Delta-G solvation = -2815.663213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.79478 -40.26993 -35.36824 -34.13439 -33.37341 -32.46688 -31.43722 -28.50528 -27.70740 -24.40917 -23.85001 -23.19536 -22.15805 -20.62008 -17.56054 -17.44594 -16.62685 -16.29465 -15.77524 -15.28928 -14.76353 -14.50788 -13.84785 -13.38494 -13.15490 -13.10920 -12.76272 -12.47611 -12.31731 -11.81241 -11.38891 -11.21573 -10.98320 -10.75868 -10.34057 -10.16440 -9.98434 -9.93078 -9.50700 -9.24100 -8.60036 -8.59309 -6.23095 -4.28792 0.62242 1.15853 1.99438 2.93038 3.28199 3.31617 3.35862 3.55248 3.77255 3.86306 4.28513 4.35551 4.57428 4.66497 4.74498 5.01478 5.08444 5.17143 5.28547 5.38499 5.58343 5.62615 5.75730 5.92935 6.06007 6.43948 6.56440 6.65134 7.12370 7.19919 7.70179 7.88746 7.93332 8.71043 8.84492 9.35939 10.87343 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040429 B = 0.004523 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.403535 B = 6189.014892 C = 6468.195742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.136 4.136 3 C -0.079 4.079 4 C -0.135 4.135 5 C 0.208 3.792 6 C 0.197 3.803 7 N -0.392 5.392 8 O 0.071 5.929 9 C 0.238 3.762 10 C 0.101 3.899 11 C -0.525 4.525 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.907 3.093 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.475 5.475 20 N -0.442 5.442 21 C 0.104 3.896 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.268 0.732 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.207 7.383 2.020 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C -0.104 4.104 4 C -0.156 4.156 5 C 0.070 3.930 6 C -0.073 4.073 7 N -0.103 5.103 8 O 0.012 5.988 9 C 0.019 3.981 10 C 0.063 3.937 11 C -0.564 4.564 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.733 3.267 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 N -0.207 5.207 20 N -0.151 5.151 21 C -0.056 4.056 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.157 0.843 26 H 0.161 0.839 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.149 6.977 2.072 18.630 hybrid contribution 0.063 0.491 -0.946 1.067 sum -17.086 7.469 1.126 18.681 Atomic orbital electron populations 1.20726 0.89937 1.03255 1.02682 1.21097 0.97777 0.94267 1.00688 1.21400 0.93285 0.98426 0.97320 1.22034 0.95217 0.98496 0.99895 1.17930 0.87638 0.89215 0.98218 1.23379 0.94982 0.85449 1.03528 1.74721 0.90202 1.23188 1.22184 1.85252 1.22129 1.25514 1.65936 1.30284 0.97432 0.81040 0.89307 1.18247 0.83283 0.91975 1.00231 1.20758 1.12258 1.33292 0.90067 0.92077 1.24915 0.95674 0.94966 0.98078 1.69911 1.18064 1.33555 1.31011 0.86407 0.78038 0.78526 0.83692 1.19912 1.20916 1.19920 1.72215 1.00392 1.26519 1.21616 1.67541 1.07952 1.30056 1.09517 1.22730 0.89014 0.97754 0.96089 0.90743 0.91255 0.90959 0.84262 0.83918 0.92205 0.91116 0.92196 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.03 36.00 0.36 -0.33 16 2 C -0.14 -1.39 5.90 -104.41 -0.62 -2.01 16 3 C -0.08 -0.84 9.85 -39.31 -0.39 -1.22 16 4 C -0.13 -1.88 9.73 -39.12 -0.38 -2.26 16 5 C 0.21 3.74 6.76 -82.93 -0.56 3.18 16 6 C 0.20 4.20 7.90 -156.14 -1.23 2.96 16 7 N -0.39 -8.17 11.83 30.96 0.37 -7.80 16 8 O 0.07 1.55 11.29 18.03 0.20 1.76 16 9 C 0.24 5.55 7.69 -12.99 -0.10 5.45 16 10 C 0.10 2.52 5.60 -29.04 -0.16 2.36 16 11 C -0.52 -14.32 9.09 -34.44 -0.31 -14.63 16 12 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 15 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 19 N -0.47 -11.26 11.56 -9.89 -0.11 -11.38 16 20 N -0.44 -7.76 10.29 -9.76 -0.10 -7.86 16 21 C 0.10 1.32 10.85 -17.58 -0.19 1.13 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 24 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 25 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.14 1.85 7.86 -52.49 -0.41 1.44 16 27 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.07 1.83 8.14 -51.92 -0.42 1.41 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.16 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 278.63 15.07 4.20 4.20 Total: -1.00 -30.85 278.63 -6.32 -37.16 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: -2.91 Total: -4.28 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.68 Total: -3.65 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.89 Total: -51.16 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.20 Total: 1.76 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.85 -6.32 -37.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400571784.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.582 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds