Wall clock time and date at job start Sun Mar 29 2020 23:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38745 * 120.32416 * 2 1 4 4 C 1.38464 * 118.49726 * 180.22031 * 3 2 1 5 5 C 1.39259 * 119.07247 * 359.52473 * 4 3 2 6 6 C 1.48483 * 119.71871 * 180.25714 * 5 4 3 7 7 N 1.30720 * 126.40849 * 359.68290 * 6 5 4 8 8 O 1.21294 * 110.10241 * 179.86999 * 7 6 5 9 9 C 1.33673 * 110.01999 * 0.40275 * 8 7 6 10 10 C 1.50698 * 126.44309 * 179.72491 * 9 8 7 11 11 C 1.50693 * 109.47621 * 270.02819 * 10 9 8 12 12 H 1.07999 * 119.99868 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00474 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99689 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00125 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47144 * 59.99895 * 15 13 11 17 17 H 1.48503 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46865 * 299.99570 * 15 13 11 19 19 N 1.30982 * 107.11375 * 359.75483 * 9 8 7 20 20 N 1.32611 * 120.55863 * 0.22955 * 5 4 3 21 21 C 1.31708 * 121.63252 * 0.02858 * 20 5 4 22 22 H 1.08998 * 109.46814 * 270.26135 * 1 2 3 23 23 H 1.09001 * 109.46963 * 30.25585 * 1 2 3 24 24 H 1.08991 * 109.47161 * 150.26228 * 1 2 3 25 25 H 1.07998 * 120.74802 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.46591 * 179.80676 * 4 3 2 27 27 H 1.09000 * 109.47023 * 30.03316 * 10 9 8 28 28 H 1.09011 * 109.46823 * 150.02650 * 10 9 8 29 29 H 0.96998 * 120.00254 * 179.97438 * 14 13 11 30 30 H 1.08003 * 119.55442 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2075 1.1976 0.0000 4 6 3.5914 1.1535 -0.0047 5 6 4.2290 -0.0846 0.0009 6 6 5.7124 -0.1486 0.0018 7 7 6.5330 0.8689 -0.0081 8 8 7.6813 0.4785 -0.0015 9 6 7.7103 -0.8579 0.0048 10 6 8.9418 -1.7265 0.0081 11 6 9.3519 -2.0222 -1.4115 12 1 8.7779 -1.6216 -2.2339 13 6 10.4592 -2.8051 -1.6604 14 7 11.1578 -3.2934 -0.6589 15 14 10.9679 -3.1711 -3.4201 16 1 11.2629 -1.8978 -4.1250 17 1 12.1813 -4.0272 -3.4167 18 1 9.8641 -3.8787 -4.1174 19 7 6.4672 -1.2704 0.0068 20 7 3.5224 -1.2068 0.0060 21 6 2.2054 -1.1939 0.0054 22 1 -0.3633 0.0047 1.0277 23 1 -0.3633 0.8877 -0.5178 24 1 -0.3633 -0.8922 -0.5097 25 1 1.6851 2.1428 0.0004 26 1 4.1684 2.0665 -0.0080 27 1 9.7518 -1.2065 0.5196 28 1 8.7257 -2.6610 0.5261 29 1 11.9366 -3.8445 -0.8339 30 1 1.6635 -2.1281 0.0092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400571784.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:54 Heat of formation + Delta-G solvation = 70.392968 kcal Electronic energy + Delta-G solvation = -16233.187324 eV Core-core repulsion = 13416.612397 eV Total energy + Delta-G solvation = -2816.574927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.49795 -41.30175 -37.00530 -35.90381 -34.63318 -33.97278 -32.76866 -30.40669 -28.65996 -26.13418 -25.37727 -24.29699 -23.62527 -22.05766 -19.35798 -18.95165 -18.32136 -17.73467 -17.18035 -16.68924 -16.17665 -15.47612 -15.27018 -14.87254 -14.46803 -14.18302 -14.07054 -13.85608 -13.37222 -13.22055 -12.99300 -12.71501 -12.62925 -12.61829 -12.19006 -11.99191 -11.91310 -10.99705 -10.92571 -10.68253 -10.57005 -9.77477 -8.31812 -6.45563 -0.56088 0.18899 0.35061 1.34974 1.44060 1.45406 1.54124 1.88512 2.26948 2.39507 2.73403 2.86080 3.05233 3.64993 3.79865 3.89282 3.91385 4.02963 4.27096 4.56472 4.66971 4.79723 4.86838 4.88537 4.97640 5.07538 5.17374 5.21442 5.25551 5.57284 5.62908 5.85897 6.58076 6.81458 7.11490 7.23036 8.79030 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040429 B = 0.004523 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.403535 B = 6189.014892 C = 6468.195742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.110 4.110 3 C -0.072 4.072 4 C -0.130 4.130 5 C 0.156 3.844 6 C 0.202 3.798 7 N -0.391 5.391 8 O 0.064 5.936 9 C 0.232 3.768 10 C 0.111 3.889 11 C -0.547 4.547 12 H 0.052 0.948 13 C 0.023 3.977 14 N -0.915 5.915 15 Si 0.971 3.029 16 H -0.266 1.266 17 H -0.272 1.272 18 H -0.273 1.273 19 N -0.501 5.501 20 N -0.485 5.485 21 C 0.090 3.910 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.183 0.817 26 H 0.147 0.853 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.274 0.726 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.874 8.286 1.237 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.113 4.113 3 C -0.097 4.097 4 C -0.152 4.152 5 C 0.020 3.980 6 C -0.069 4.069 7 N -0.104 5.104 8 O 0.008 5.992 9 C 0.014 3.986 10 C 0.072 3.928 11 C -0.586 4.586 12 H 0.070 0.930 13 C -0.178 4.178 14 N -0.553 5.553 15 Si 0.795 3.205 16 H -0.191 1.191 17 H -0.197 1.197 18 H -0.199 1.199 19 N -0.234 5.234 20 N -0.195 5.195 21 C -0.070 4.070 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.201 0.799 26 H 0.165 0.835 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -19.792 7.901 1.298 21.350 hybrid contribution 0.648 0.229 -0.652 0.948 sum -19.143 8.130 0.646 20.808 Atomic orbital electron populations 1.20869 0.86381 1.04967 1.04197 1.21594 1.00036 0.93040 0.96620 1.21906 0.91774 1.00516 0.95521 1.22170 0.96912 0.96997 0.99134 1.17963 0.85985 0.91089 1.02981 1.24085 0.96858 0.84366 1.01609 1.74669 0.89726 1.22878 1.23105 1.85225 1.22898 1.24676 1.66357 1.29867 0.97077 0.81593 0.90100 1.17958 0.83935 0.91631 0.99264 1.20981 1.12819 1.34027 0.90756 0.92994 1.25737 0.95391 0.94429 1.02242 1.69994 1.18440 1.33839 1.32995 0.85409 0.77860 0.78662 0.78617 1.19090 1.19681 1.19862 1.72186 1.00789 1.28109 1.22346 1.67380 1.10342 1.30794 1.11013 1.23292 0.87684 1.00149 0.95863 0.89013 0.89228 0.89676 0.79933 0.83502 0.92249 0.92707 0.91705 0.79681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.03 71.24 0.71 -0.09 16 2 C -0.11 -1.86 5.90 -19.72 -0.12 -1.97 16 3 C -0.07 -1.27 9.85 22.45 0.22 -1.05 16 4 C -0.13 -3.47 9.73 22.57 0.22 -3.25 16 5 C 0.16 5.66 6.76 42.01 0.28 5.95 16 6 C 0.20 8.87 7.90 137.33 1.09 9.95 16 7 N -0.39 -16.77 11.83 -59.20 -0.70 -17.47 16 8 O 0.06 2.92 11.29 74.57 0.84 3.76 16 9 C 0.23 11.36 7.69 88.36 0.68 12.04 16 10 C 0.11 5.78 5.60 29.10 0.16 5.94 16 11 C -0.55 -30.71 9.09 25.60 0.23 -30.47 16 12 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 13 C 0.02 1.26 5.46 84.65 0.46 1.73 16 14 N -0.91 -51.84 13.29 21.45 0.28 -51.56 16 15 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 N -0.50 -24.79 11.56 -302.57 -3.50 -28.29 16 20 N -0.49 -17.12 10.29 -184.79 -1.90 -19.02 16 21 C 0.09 2.13 10.85 84.73 0.92 3.05 16 22 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.09 0.41 8.10 -2.39 -0.02 0.39 16 24 H 0.08 0.50 8.09 -2.39 -0.02 0.48 16 25 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 26 H 0.15 3.66 7.86 -2.91 -0.02 3.64 16 27 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.05 2.99 8.14 -2.38 -0.02 2.97 16 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -69.17 278.63 3.08 -66.09 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: 1.16 Total: -0.44 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 4.86 Total: 1.81 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -5.82 Total: -116.34 kcal Atomic # 8 Polarization: 2.92 SS G_CDS: 0.84 Total: 3.76 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -69.17 3.08 -66.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400571784.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.483 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds