Wall clock time and date at job start Sun Mar 29 2020 23:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99665 * 2 1 4 4 H 1.48504 * 109.47302 * 270.00009 * 3 2 1 5 5 H 1.48502 * 109.47325 * 30.00586 * 3 2 1 6 6 H 1.48510 * 109.46830 * 150.00387 * 3 2 1 7 7 C 1.37879 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99585 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00244 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46971 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00087 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47520 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46720 * 64.03951 * 12 11 10 14 14 C 1.47240 * 111.00040 * 65.61337 * 13 12 11 15 15 C 1.53087 * 108.47602 * 54.53365 * 14 13 12 16 16 C 1.50305 * 109.71358 * 48.99298 * 15 14 13 17 17 C 1.29987 * 122.87324 * 343.49628 * 16 15 14 18 18 Cl 1.73603 * 118.37196 * 180.35111 * 17 16 15 19 19 C 1.46840 * 111.00127 * 188.54815 * 13 12 11 20 20 H 0.96996 * 120.00191 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46941 * 60.00809 * 9 7 2 22 22 H 1.08991 * 109.47743 * 300.00565 * 9 7 2 23 23 H 1.09006 * 109.46592 * 60.00349 * 11 10 9 24 24 H 1.08999 * 109.47355 * 300.00634 * 11 10 9 25 25 H 1.08998 * 109.46894 * 304.04734 * 12 11 10 26 26 H 1.08992 * 109.47149 * 184.04220 * 12 11 10 27 27 H 1.08996 * 109.63792 * 174.23328 * 14 13 12 28 28 H 1.09002 * 109.63632 * 294.84086 * 14 13 12 29 29 H 1.09003 * 109.43110 * 169.06367 * 15 14 13 30 30 H 1.08996 * 109.42974 * 288.91472 * 15 14 13 31 31 H 1.08006 * 118.56553 * 163.49592 * 16 15 14 32 32 H 1.08997 * 109.33376 * 47.80769 * 19 13 12 33 33 H 1.08996 * 109.33976 * 167.47795 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5653 -4.8754 -0.0011 12 6 2.6482 -5.9562 -0.0017 13 7 3.4231 -5.8735 1.2435 14 6 2.5861 -6.2043 2.4088 15 6 1.9481 -7.5759 2.1742 16 6 3.0011 -8.5577 1.7423 17 6 4.1697 -8.1924 1.3057 18 17 5.2946 -9.4256 0.8288 19 6 4.5951 -6.7568 1.1937 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6247 -2.5572 0.8895 23 1 0.9455 -4.9822 -0.8915 24 1 0.9448 -4.9828 0.8885 25 1 3.3118 -5.8052 -0.8532 26 1 2.1813 -6.9384 -0.0746 27 1 3.2038 -6.2363 3.3063 28 1 1.8055 -5.4523 2.5245 29 1 1.4855 -7.9235 3.0980 30 1 1.1880 -7.4942 1.3973 31 1 2.7770 -9.6128 1.7971 32 1 5.1191 -6.6082 0.2496 33 1 5.2642 -6.5157 2.0197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404417828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:01 Heat of formation + Delta-G solvation = -35.912002 kcal Electronic energy + Delta-G solvation = -15695.739293 eV Core-core repulsion = 12975.662130 eV Total energy + Delta-G solvation = -2720.077163 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80785 -36.81412 -36.27848 -33.06727 -32.45007 -30.94268 -29.26158 -26.86073 -24.27782 -23.74682 -22.26062 -20.99893 -18.01780 -16.90558 -16.36665 -15.85424 -15.40117 -15.10454 -14.51060 -14.24848 -13.94319 -13.64031 -13.10782 -12.85008 -12.58405 -12.10711 -11.81665 -11.62703 -11.51619 -11.14455 -11.10366 -10.94616 -10.78932 -10.68620 -10.36591 -9.96315 -9.06780 -9.02902 -8.76866 -8.23328 -8.09462 -6.07068 -4.07901 1.68590 2.06648 3.33365 3.38212 3.44247 3.94250 4.38735 4.54118 4.80316 4.86550 4.99113 5.05520 5.25436 5.29605 5.39375 5.45861 5.62925 5.66857 5.81382 5.88315 5.99251 6.03704 6.17613 6.24262 6.32983 7.05637 7.08965 7.15770 7.47174 7.84970 8.20858 8.65359 9.06872 9.56947 11.04655 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.047023 B = 0.004270 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.305663 B = 6555.684150 C = 6821.986874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.067 3.933 12 C 0.051 3.949 13 N -0.501 5.501 14 C 0.044 3.956 15 C -0.124 4.124 16 C -0.146 4.146 17 C -0.096 4.096 18 Cl -0.100 7.100 19 C 0.090 3.910 20 H 0.263 0.737 21 H 0.002 0.998 22 H 0.003 0.997 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -17.729 3.661 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.011 4.011 12 C -0.076 4.076 13 N -0.223 5.223 14 C -0.084 4.084 15 C -0.163 4.163 16 C -0.166 4.166 17 C -0.125 4.125 18 Cl -0.072 7.072 19 C -0.038 4.038 20 H 0.073 0.927 21 H 0.020 0.980 22 H 0.021 0.979 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.585 -17.150 3.662 18.404 hybrid contribution -0.262 -0.303 -0.143 0.425 sum 5.323 -17.453 3.519 18.583 Atomic orbital electron populations 1.69963 1.06113 1.27057 1.50910 1.24944 0.94949 0.99401 0.95253 0.86351 0.79719 0.82313 0.78193 1.20523 1.21156 1.19582 1.21068 0.94116 0.89340 1.50329 0.91490 1.20178 0.88854 0.83930 0.95092 1.87956 1.34632 1.12288 1.95012 1.22233 0.93746 0.86258 0.98893 1.22319 0.96479 0.96625 0.92221 1.62757 1.08019 1.48419 1.03063 1.22410 0.97662 0.94397 0.93938 1.21186 0.97179 0.95405 1.02507 1.22356 0.94053 1.00820 0.99344 1.23748 0.92744 0.92562 1.03412 1.98363 1.63278 1.54694 1.90838 1.21324 0.94731 0.83470 1.04317 0.92749 0.98026 0.97926 0.94261 0.94552 0.89983 0.93503 0.90240 0.88908 0.89705 0.89681 0.86584 0.88818 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -15.16 9.43 -34.44 -0.32 -15.49 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.35 5.69 36.00 0.20 5.55 16 10 O -0.38 -9.17 10.26 -35.23 -0.36 -9.53 16 11 C 0.07 1.22 5.97 37.16 0.22 1.44 16 12 C 0.05 0.76 4.76 -3.83 -0.02 0.74 16 13 N -0.50 -7.26 4.97 -236.12 -1.17 -8.44 16 14 C 0.04 0.55 5.65 -3.59 -0.02 0.53 16 15 C -0.12 -1.25 5.52 -28.03 -0.15 -1.40 16 16 C -0.15 -1.51 9.01 -35.93 -0.32 -1.83 16 17 C -0.10 -1.07 5.95 -36.01 -0.21 -1.28 16 18 Cl -0.10 -1.07 28.81 -51.86 -1.49 -2.56 16 19 C 0.09 1.09 5.74 -5.28 -0.03 1.06 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 21 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 22 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.63 6.47 -51.93 -0.34 0.30 16 25 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 26 H 0.05 0.60 5.50 -51.93 -0.29 0.31 16 27 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.09 1.28 6.64 -51.93 -0.34 0.94 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.87 6.81 -51.93 -0.35 0.52 16 31 H 0.12 1.08 7.99 -52.48 -0.42 0.66 16 32 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 285.52 15.07 4.30 4.30 Total: -1.00 -31.15 285.52 -8.41 -39.55 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -4.64 Total: -4.77 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.76 Total: -9.18 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.44 Total: -34.80 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.36 Total: -9.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.49 Total: -2.56 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.15 -8.41 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404417828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.640 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds