Wall clock time and date at job start Sun Mar 29 2020 23:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99665 * 2 1 4 4 H 1.48504 * 109.47302 * 270.00009 * 3 2 1 5 5 H 1.48502 * 109.47325 * 30.00586 * 3 2 1 6 6 H 1.48510 * 109.46830 * 150.00387 * 3 2 1 7 7 C 1.37879 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99585 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00244 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46971 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00087 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47520 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46720 * 64.03951 * 12 11 10 14 14 C 1.47240 * 111.00040 * 65.61337 * 13 12 11 15 15 C 1.53087 * 108.47602 * 54.53365 * 14 13 12 16 16 C 1.50305 * 109.71358 * 48.99298 * 15 14 13 17 17 C 1.29987 * 122.87324 * 343.49628 * 16 15 14 18 18 Cl 1.73603 * 118.37196 * 180.35111 * 17 16 15 19 19 C 1.46840 * 111.00127 * 188.54815 * 13 12 11 20 20 H 0.96996 * 120.00191 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46941 * 60.00809 * 9 7 2 22 22 H 1.08991 * 109.47743 * 300.00565 * 9 7 2 23 23 H 1.09006 * 109.46592 * 60.00349 * 11 10 9 24 24 H 1.08999 * 109.47355 * 300.00634 * 11 10 9 25 25 H 1.08998 * 109.46894 * 304.04734 * 12 11 10 26 26 H 1.08992 * 109.47149 * 184.04220 * 12 11 10 27 27 H 1.08996 * 109.63792 * 174.23328 * 14 13 12 28 28 H 1.09002 * 109.63632 * 294.84086 * 14 13 12 29 29 H 1.09003 * 109.43110 * 169.06367 * 15 14 13 30 30 H 1.08996 * 109.42974 * 288.91472 * 15 14 13 31 31 H 1.08006 * 118.56553 * 163.49592 * 16 15 14 32 32 H 1.08997 * 109.33376 * 47.80769 * 19 13 12 33 33 H 1.08996 * 109.33976 * 167.47795 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5653 -4.8754 -0.0011 12 6 2.6482 -5.9562 -0.0017 13 7 3.4231 -5.8735 1.2435 14 6 2.5861 -6.2043 2.4088 15 6 1.9481 -7.5759 2.1742 16 6 3.0011 -8.5577 1.7423 17 6 4.1697 -8.1924 1.3057 18 17 5.2946 -9.4256 0.8288 19 6 4.5951 -6.7568 1.1937 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6247 -2.5572 0.8895 23 1 0.9455 -4.9822 -0.8915 24 1 0.9448 -4.9828 0.8885 25 1 3.3118 -5.8052 -0.8532 26 1 2.1813 -6.9384 -0.0746 27 1 3.2038 -6.2363 3.3063 28 1 1.8055 -5.4523 2.5245 29 1 1.4855 -7.9235 3.0980 30 1 1.1880 -7.4942 1.3973 31 1 2.7770 -9.6128 1.7971 32 1 5.1191 -6.6082 0.2496 33 1 5.2642 -6.5157 2.0197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404417828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:01 Heat of formation + Delta-G solvation = -56.713627 kcal Electronic energy + Delta-G solvation = -15696.641319 eV Core-core repulsion = 12975.662130 eV Total energy + Delta-G solvation = -2720.979189 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82334 -38.36798 -37.39063 -34.96147 -33.80457 -31.89108 -30.66484 -28.87893 -25.43223 -24.74820 -24.40184 -22.19568 -19.02860 -18.54737 -17.88099 -17.38795 -16.81562 -16.47966 -16.05769 -15.61360 -15.19375 -14.98465 -14.60232 -13.92296 -13.71603 -13.61217 -13.23003 -12.92940 -12.84206 -12.72526 -12.45534 -12.28139 -12.23492 -11.99356 -11.88532 -11.61714 -11.21993 -10.82929 -10.15448 -9.87482 -9.25599 -8.29521 -6.41067 0.85910 1.22516 1.41726 1.44386 1.56675 2.37287 2.90290 3.04385 3.25378 3.65923 3.94076 4.03496 4.08684 4.22273 4.33183 4.38979 4.52715 4.57560 4.63430 4.78490 4.83993 4.92381 4.99594 5.03408 5.22163 5.22577 5.44574 5.58403 5.99334 6.03583 6.03964 6.59635 6.89136 7.31233 8.82838 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.047023 B = 0.004270 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.305663 B = 6555.684150 C = 6821.986874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.395 6.395 11 C 0.058 3.942 12 C 0.063 3.937 13 N -0.530 5.530 14 C 0.042 3.958 15 C -0.118 4.118 16 C -0.137 4.137 17 C -0.106 4.106 18 Cl -0.097 7.097 19 C 0.094 3.906 20 H 0.270 0.730 21 H -0.017 1.017 22 H -0.016 1.016 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.801 -18.207 3.987 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.314 6.314 11 C -0.019 4.019 12 C -0.065 4.065 13 N -0.252 5.252 14 C -0.085 4.085 15 C -0.156 4.156 16 C -0.157 4.157 17 C -0.134 4.134 18 Cl -0.068 7.068 19 C -0.034 4.034 20 H 0.079 0.921 21 H 0.001 0.999 22 H 0.002 0.998 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.149 0.851 32 H 0.109 0.891 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.120 -17.660 3.989 19.111 hybrid contribution -0.457 -0.239 -0.222 0.561 sum 5.663 -17.899 3.767 19.147 Atomic orbital electron populations 1.70066 1.07720 1.28561 1.50759 1.25931 0.95929 1.03284 0.93982 0.85208 0.78397 0.77148 0.78806 1.19325 1.19909 1.18954 1.21388 0.94050 0.90944 1.51901 0.92198 1.19787 0.88655 0.84960 0.93207 1.87908 1.34656 1.13810 1.95063 1.22569 0.95344 0.84471 0.99538 1.22169 0.95548 0.96192 0.92546 1.62683 1.08991 1.50218 1.03272 1.22398 0.97214 0.95321 0.93598 1.21141 0.96959 0.93847 1.03678 1.22500 0.93516 1.01555 0.98079 1.23566 0.93256 0.92040 1.04562 1.98364 1.63285 1.54312 1.90885 1.21237 0.93769 0.84002 1.04437 0.92104 0.99905 0.99794 0.93617 0.93811 0.90560 0.90928 0.89454 0.90882 0.87479 0.89568 0.85070 0.89099 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.98 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -32.98 9.43 25.60 0.24 -32.74 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.89 5.69 71.23 0.41 12.30 16 10 O -0.39 -19.50 10.26 -148.98 -1.53 -21.03 16 11 C 0.06 2.12 5.97 71.98 0.43 2.55 16 12 C 0.06 1.82 4.76 86.30 0.41 2.23 16 13 N -0.53 -14.98 4.97 -900.96 -4.48 -19.45 16 14 C 0.04 1.01 5.65 86.27 0.49 1.50 16 15 C -0.12 -2.10 5.52 29.75 0.16 -1.94 16 16 C -0.14 -2.47 9.01 26.57 0.24 -2.23 16 17 C -0.11 -2.14 5.95 26.52 0.16 -1.98 16 18 Cl -0.10 -1.90 28.81 -2.72 -0.08 -1.98 16 19 C 0.09 2.17 5.74 85.39 0.49 2.66 16 20 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 21 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 22 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 23 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 24 H 0.04 1.53 6.47 -2.39 -0.02 1.52 16 25 H 0.08 2.28 7.93 -2.39 -0.02 2.26 16 26 H 0.07 1.72 5.50 -2.39 -0.01 1.71 16 27 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 28 H 0.07 2.02 6.64 -2.39 -0.02 2.00 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.56 6.81 -2.39 -0.02 1.54 16 31 H 0.13 2.01 7.99 -2.91 -0.02 1.99 16 32 H 0.09 2.11 7.90 -2.39 -0.02 2.10 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -66.37 285.52 0.81 -65.57 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 1.09 Total: 2.89 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 3.49 Total: -16.78 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -4.19 Total: -75.52 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.53 Total: -21.03 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -66.37 0.81 -65.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404417828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.855 kcal (2) G-P(sol) polarization free energy of solvation -66.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds