Wall clock time and date at job start Sun Mar 29 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.57738 * 2 1 4 4 C 1.53238 * 109.58317 * 120.27409 * 2 1 3 5 5 N 1.46375 * 109.48751 * 62.27876 * 4 2 1 6 6 C 1.34777 * 119.64727 * 245.06619 * 5 4 2 7 7 O 1.21691 * 119.99707 * 354.69435 * 6 5 4 8 8 C 1.46373 * 120.00140 * 174.69974 * 6 5 4 9 9 H 1.08000 * 119.99858 * 5.00625 * 8 6 5 10 10 C 1.40044 * 120.00194 * 185.00124 * 8 6 5 11 11 N 1.30678 * 120.00255 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 120.00145 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47434 * 89.99879 * 12 10 8 14 14 H 1.48501 * 109.47212 * 209.99964 * 12 10 8 15 15 H 1.48502 * 109.47211 * 329.99758 * 12 10 8 16 16 C 1.46374 * 120.70477 * 65.08872 * 5 4 2 17 17 C 1.53236 * 109.48722 * 294.90859 * 16 5 4 18 18 H 1.09000 * 109.58700 * 297.86068 * 17 16 5 19 19 C 1.53000 * 109.58256 * 177.59065 * 17 16 5 20 20 S 1.81740 * 109.69865 * 239.65758 * 2 1 3 21 21 O 1.42100 * 109.47062 * 50.71390 * 20 2 1 22 22 H 1.08998 * 109.47307 * 299.99841 * 1 2 3 23 23 H 1.09001 * 109.47272 * 59.99877 * 1 2 3 24 24 H 1.08998 * 109.46919 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46936 * 182.28517 * 4 2 1 26 26 H 1.09007 * 109.46738 * 302.27328 * 4 2 1 27 27 H 0.96995 * 120.00567 * 179.97438 * 11 10 8 28 28 H 1.08993 * 109.47266 * 54.91796 * 16 5 4 29 29 H 1.09009 * 109.46498 * 174.90713 * 16 5 4 30 30 H 1.08998 * 109.47419 * 60.00014 * 19 17 16 31 31 H 1.09001 * 109.47317 * 180.02562 * 19 17 16 32 32 H 1.09006 * 109.47077 * 299.99872 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0271 0.0000 4 6 2.0436 -0.7278 1.2469 5 7 1.6025 -2.1232 1.2142 6 6 0.7440 -2.5731 2.1506 7 8 0.4149 -1.8496 3.0722 8 6 0.2075 -3.9319 2.0593 9 1 0.5605 -4.6012 1.2887 10 6 -0.7634 -4.3642 2.9713 11 7 -1.1902 -3.5546 3.9041 12 14 -1.4475 -6.0985 2.8552 13 1 -0.6205 -7.0133 3.6822 14 1 -2.8474 -6.1126 3.3507 15 1 -1.4188 -6.5483 1.4402 16 6 2.0843 -3.0352 0.1756 17 6 1.5752 -2.5673 -1.1919 18 1 0.4857 -2.5965 -1.2058 19 6 2.1266 -3.4842 -2.2856 20 16 2.1426 -0.8644 -1.4767 21 8 1.5036 -0.3392 -2.6321 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1328 -0.6915 1.2659 26 1 1.6484 -0.2427 2.1394 27 1 -1.8629 -3.8538 4.5355 28 1 3.1742 -3.0416 0.1747 29 1 1.7153 -4.0412 0.3758 30 1 1.7933 -4.5061 -2.1052 31 1 1.7638 -3.1495 -3.2574 32 1 3.2161 -3.4498 -2.2734 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408338895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:58 Heat of formation + Delta-G solvation = -73.155794 kcal Electronic energy + Delta-G solvation = -16759.842816 eV Core-core repulsion = 14040.194348 eV Total energy + Delta-G solvation = -2719.648469 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.40663 -35.43036 -35.14610 -33.68439 -32.52786 -31.22421 -27.34590 -25.91834 -24.94590 -21.78022 -21.38520 -19.32854 -17.12983 -16.59491 -15.97694 -15.36025 -15.03927 -14.56254 -14.43872 -14.07609 -13.65185 -12.88486 -12.69973 -12.27828 -12.05812 -12.03871 -11.82561 -11.68633 -11.43775 -11.20771 -11.05081 -10.84629 -10.72058 -10.60576 -10.32986 -10.18210 -9.24646 -8.93854 -7.90038 -7.67638 -7.44618 -6.28786 -4.74591 1.90951 2.83540 3.07668 3.15309 3.17684 3.99519 4.08079 4.36246 4.47309 5.07685 5.24136 5.29094 5.32751 5.52527 5.63688 5.71084 5.83505 5.96532 6.07358 6.18484 6.21034 6.30157 6.36812 6.46649 6.49623 6.66692 7.37530 7.50743 8.01860 8.19624 8.93392 9.27343 10.47013 10.65481 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.030514 B = 0.008498 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.376898 B = 3293.935117 C = 3798.896797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.412 4.412 3 H 0.113 0.887 4 C 0.143 3.857 5 N -0.648 5.648 6 C 0.558 3.442 7 O -0.573 6.573 8 C -0.546 4.546 9 H 0.075 0.925 10 C 0.088 3.912 11 N -0.766 5.766 12 Si 0.905 3.095 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.265 1.265 16 C 0.147 3.853 17 C -0.416 4.416 18 H 0.096 0.904 19 C -0.122 4.122 20 S 1.221 4.779 21 O -0.864 6.864 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.269 0.731 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.295 0.476 -7.929 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.532 4.532 3 H 0.131 0.869 4 C 0.017 3.983 5 N -0.385 5.385 6 C 0.365 3.635 7 O -0.455 6.455 8 C -0.582 4.582 9 H 0.093 0.907 10 C -0.132 4.132 11 N -0.394 5.394 12 Si 0.729 3.271 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.189 1.189 16 C 0.021 3.979 17 C -0.536 4.536 18 H 0.114 0.886 19 C -0.181 4.181 20 S 1.421 4.579 21 O -0.860 6.860 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.482 1.307 -8.022 12.489 hybrid contribution -2.762 -0.910 0.042 2.908 sum 6.720 0.397 -7.980 10.440 Atomic orbital electron populations 1.21631 0.92798 1.03105 1.01696 1.27779 1.03595 1.08424 1.13391 0.86912 1.20763 0.97455 0.84060 0.95996 1.48138 1.50902 1.08329 1.31180 1.18257 0.76896 0.88353 0.80034 1.90599 1.61398 1.59263 1.34205 1.21008 1.23826 0.97305 1.16093 0.90738 1.25726 0.95354 0.98242 0.93908 1.70001 1.22610 1.34931 1.11893 0.86410 0.78492 0.82832 0.79323 1.19573 1.20471 1.18898 1.21104 0.97386 0.96350 0.83050 1.27744 1.08273 1.15202 1.02404 0.88580 1.21366 1.00868 0.99520 0.96342 1.69901 1.18301 0.86685 0.83050 1.93033 1.78828 1.74883 1.39218 0.91895 0.93400 0.91763 0.92001 0.88621 0.92010 0.92042 0.87726 0.91335 0.92701 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.90 37.16 0.33 -2.26 16 2 C -0.41 -6.55 3.44 -26.61 -0.09 -6.64 16 3 H 0.11 1.51 8.14 -51.92 -0.42 1.09 16 4 C 0.14 2.48 5.66 -3.99 -0.02 2.45 16 5 N -0.65 -13.23 2.14 -175.26 -0.38 -13.60 16 6 C 0.56 14.88 7.48 -12.99 -0.10 14.78 16 7 O -0.57 -17.60 14.34 5.20 0.07 -17.53 16 8 C -0.55 -14.55 8.83 -35.63 -0.31 -14.86 16 9 H 0.07 1.79 5.60 -52.49 -0.29 1.50 16 10 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 11 N -0.77 -22.32 11.84 55.55 0.66 -21.66 16 12 Si 0.90 19.58 29.56 -169.99 -5.02 14.55 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 16 C 0.15 2.38 5.40 -3.99 -0.02 2.36 16 17 C -0.42 -6.32 2.91 -26.61 -0.08 -6.40 16 18 H 0.10 1.77 7.35 -51.93 -0.38 1.39 16 19 C -0.12 -1.47 9.23 37.16 0.34 -1.13 16 20 S 1.22 17.37 12.58 -107.50 -1.35 16.02 16 21 O -0.86 -16.97 17.93 -35.23 -0.63 -17.60 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.05 0.89 8.06 -51.93 -0.42 0.48 16 24 H 0.06 1.40 6.47 -51.93 -0.34 1.06 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.95 6.87 -51.93 -0.36 1.59 16 27 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.85 5.19 -51.92 -0.27 1.58 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 271.88 15.07 4.10 4.10 Total: -1.00 -36.58 271.88 -6.75 -43.33 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.15 Total: 1.82 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.05 Total: -9.42 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.28 Total: -35.26 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.56 Total: -35.13 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 17.37 SS G_CDS: -1.35 Total: 16.02 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -36.58 -6.75 -43.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408338895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.824 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds