Wall clock time and date at job start Sun Mar 29 2020 23:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38121 * 119.54980 * 2 1 4 4 C 1.39891 * 118.98633 * 180.02562 * 3 2 1 5 5 C 1.47994 * 120.92910 * 180.02562 * 4 3 2 6 6 O 1.21568 * 119.99578 * 312.86523 * 5 4 3 7 7 N 1.34774 * 120.00743 * 132.86826 * 5 4 3 8 8 C 1.36783 * 120.00389 * 184.98493 * 7 5 4 9 9 H 1.08009 * 120.00041 * 8.22734 * 8 7 5 10 10 C 1.39103 * 120.00262 * 188.22968 * 8 7 5 11 11 N 1.31328 * 119.99780 * 16.64000 * 10 8 7 12 12 Si 1.86799 * 120.00570 * 196.63644 * 10 8 7 13 13 H 1.48494 * 109.47351 * 89.99755 * 12 10 8 14 14 H 1.48500 * 109.47309 * 210.00381 * 12 10 8 15 15 H 1.48504 * 109.46813 * 330.00129 * 12 10 8 16 16 C 1.46506 * 119.99475 * 4.98606 * 7 5 4 17 17 C 1.47195 * 109.47399 * 94.81297 * 16 7 5 18 18 N 6.29233 * 174.55692 * 68.93182 * 2 1 3 19 19 C 1.39933 * 118.14613 * 0.02562 * 4 3 2 20 20 C 1.38079 * 118.98888 * 359.97438 * 19 4 3 21 21 N 1.31827 * 119.54409 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.46952 * 269.98011 * 1 2 3 23 23 H 1.09000 * 109.47188 * 29.97032 * 1 2 3 24 24 H 1.08997 * 109.47850 * 149.97596 * 1 2 3 25 25 H 1.07997 * 120.50912 * 0.04426 * 3 2 1 26 26 H 0.97003 * 120.00169 * 180.02562 * 11 10 8 27 27 H 1.09001 * 109.46497 * 214.81120 * 16 7 5 28 28 H 1.09000 * 109.46833 * 334.80746 * 16 7 5 29 29 H 1.07999 * 120.50756 * 180.02562 * 19 4 3 30 30 H 1.08004 * 119.54856 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2016 0.0000 4 6 3.5870 1.1878 -0.0005 5 6 4.3601 2.4497 0.0000 6 8 4.0666 3.3427 -0.7710 7 7 5.3896 2.6091 0.8551 8 6 6.0390 3.8108 0.9272 9 1 5.6475 4.6687 0.4007 10 6 7.2038 3.9279 1.6787 11 7 7.8597 2.8509 2.0453 12 14 7.8350 5.6171 2.1663 13 1 7.2481 6.0065 3.4735 14 1 9.3151 5.5786 2.2799 15 1 7.4435 6.6090 1.1328 16 6 5.8130 1.4952 1.7073 17 6 6.9182 0.7725 1.0571 18 7 7.7709 0.2146 0.5570 19 6 4.2349 -0.0525 -0.0016 20 6 3.4743 -1.2049 -0.0016 21 7 2.1570 -1.1469 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3635 -0.8897 -0.5142 25 1 1.6491 2.1374 0.0007 26 1 8.6718 2.9325 2.5696 27 1 6.1480 1.8814 2.6700 28 1 4.9746 0.8157 1.8603 29 1 5.3135 -0.1076 -0.0017 30 1 3.9650 -2.1670 -0.0028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447444696.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:54 Heat of formation + Delta-G solvation = 29.562094 kcal Electronic energy + Delta-G solvation = -17168.814552 eV Core-core repulsion = 14350.469066 eV Total energy + Delta-G solvation = -2818.345487 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.71759 -40.11160 -37.82373 -36.27591 -34.48561 -33.53405 -33.14503 -29.46179 -28.45489 -27.37550 -24.89218 -23.59342 -21.18309 -20.00700 -18.55582 -18.12168 -17.48451 -17.19560 -16.61930 -16.13485 -15.67075 -15.44749 -15.18941 -14.93973 -14.44475 -14.11137 -13.91333 -13.46426 -13.27697 -13.16456 -13.02148 -12.96957 -12.58350 -12.38403 -12.30335 -12.15528 -11.26220 -11.11018 -10.75479 -10.33080 -10.19612 -9.90453 -8.51668 -6.07822 -0.13316 0.09933 1.35979 1.44127 1.55285 1.73866 1.90709 2.18580 2.28829 2.73623 2.84021 2.95231 3.36850 3.50533 3.67460 3.87351 3.99858 4.07698 4.36170 4.49011 4.63575 4.75767 4.85609 4.88261 5.06032 5.15204 5.23759 5.35717 5.68722 5.82015 6.23931 6.91648 6.94008 6.95540 7.14931 7.69291 8.47944 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.007344 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.040469 B = 3811.824067 C = 4431.001179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.128 3.872 3 C -0.137 4.137 4 C -0.066 4.066 5 C 0.473 3.527 6 O -0.612 6.612 7 N -0.435 5.435 8 C -0.342 4.342 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.889 5.889 12 Si 0.999 3.001 13 H -0.257 1.257 14 H -0.281 1.281 15 H -0.275 1.275 16 C 0.220 3.780 17 C 0.268 3.732 18 N -0.502 5.502 19 C -0.172 4.172 20 C 0.112 3.888 21 N -0.489 5.489 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.145 0.855 26 H 0.281 0.719 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.279 -5.516 3.505 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.010 4.010 3 C -0.158 4.158 4 C -0.077 4.077 5 C 0.264 3.736 6 O -0.499 6.499 7 N -0.152 5.152 8 C -0.469 4.469 9 H 0.109 0.891 10 C -0.196 4.196 11 N -0.528 5.528 12 Si 0.822 3.178 13 H -0.182 1.182 14 H -0.206 1.206 15 H -0.200 1.200 16 C 0.094 3.906 17 C -0.049 4.049 18 N -0.183 5.183 19 C -0.193 4.193 20 C -0.044 4.044 21 N -0.200 5.200 22 H 0.115 0.885 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.163 0.837 26 H 0.092 0.908 27 H 0.150 0.850 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.430 -6.683 2.531 11.832 hybrid contribution 1.269 1.989 0.203 2.368 sum -8.161 -4.694 2.734 9.804 Atomic orbital electron populations 1.20818 0.85621 1.04577 1.04556 1.21791 0.98857 0.86996 0.93364 1.22152 0.92275 1.00802 1.00533 1.20397 0.95265 0.93166 0.98894 1.18490 0.84341 0.87953 0.82856 1.90608 1.72141 1.44937 1.42199 1.43711 1.27244 1.11083 1.33172 1.19833 1.07742 0.87830 1.31475 0.89082 1.26041 0.94676 1.02990 0.95875 1.69735 1.17082 1.29463 1.36533 0.84828 0.76959 0.76813 0.79187 1.18199 1.20643 1.20027 1.19245 0.89998 0.86636 0.94767 1.29162 0.93431 0.90154 0.92175 1.80875 1.11848 1.15077 1.10536 1.22496 1.01510 0.92793 1.02545 1.23033 0.89026 0.98565 0.93823 1.67536 1.10195 1.29500 1.12752 0.88549 0.89196 0.89652 0.83720 0.90795 0.84956 0.86450 0.85742 0.79450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 10.17 71.24 0.72 -1.00 16 2 C 0.13 3.38 6.78 42.53 0.29 3.67 16 3 C -0.14 -4.32 9.46 22.64 0.21 -4.11 16 4 C -0.07 -2.48 5.00 -19.88 -0.10 -2.58 16 5 C 0.47 22.41 7.26 86.83 0.63 23.04 16 6 O -0.61 -33.61 16.64 -3.93 -0.07 -33.68 16 7 N -0.43 -20.69 2.59 -648.56 -1.68 -22.37 16 8 C -0.34 -17.71 9.45 84.13 0.80 -16.92 16 9 H 0.09 5.07 7.27 -2.91 -0.02 5.05 16 10 C 0.01 0.31 5.13 84.98 0.44 0.75 16 11 N -0.89 -42.74 8.46 21.69 0.18 -42.55 16 12 Si 1.00 39.16 29.59 68.60 2.03 41.19 16 13 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 14 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 16 C 0.22 8.83 4.77 84.57 0.40 9.23 16 17 C 0.27 11.74 10.59 89.45 0.95 12.69 16 18 N -0.50 -23.49 18.53 19.99 0.37 -23.12 16 19 C -0.17 -5.73 7.63 22.64 0.17 -5.56 16 20 C 0.11 3.07 11.17 84.65 0.95 4.01 16 21 N -0.49 -13.60 10.25 -184.08 -1.89 -15.49 16 22 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 23 H 0.09 1.33 8.07 -2.39 -0.02 1.31 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 26 H 0.28 12.93 8.31 -92.71 -0.77 12.16 16 27 H 0.13 5.37 6.35 -2.39 -0.02 5.36 16 28 H 0.12 3.88 5.43 -2.39 -0.01 3.87 16 29 H 0.12 4.46 4.68 -2.91 -0.01 4.45 16 30 H 0.19 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -64.66 267.29 5.59 -59.07 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.18 Total: 13.73 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 5.46 Total: 23.22 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -3.01 Total: -103.53 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.07 Total: -33.68 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -64.66 5.59 -59.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447444696.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.630 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds