Wall clock time and date at job start Sun Mar 29 2020 23:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38118 * 120.50548 * 2 1 4 4 N 1.31821 * 120.90318 * 180.02562 * 3 2 1 5 5 C 1.31853 * 122.06773 * 359.97438 * 4 3 2 6 6 C 1.38084 * 120.90385 * 0.02596 * 5 4 3 7 7 C 1.39892 * 120.49987 * 180.02562 * 2 1 3 8 8 C 1.47992 * 120.93468 * 0.02562 * 7 2 1 9 9 O 1.21567 * 119.99402 * 305.06356 * 8 7 2 10 10 N 1.34769 * 120.00286 * 125.06090 * 8 7 2 11 11 C 1.36794 * 120.00135 * 185.04851 * 10 8 7 12 12 H 1.07996 * 119.99642 * 13.15372 * 11 10 8 13 13 C 1.39103 * 119.99797 * 193.15816 * 11 10 8 14 14 N 1.31318 * 120.00700 * 18.02113 * 13 11 10 15 15 Si 1.86807 * 119.99747 * 198.02235 * 13 11 10 16 16 H 1.48499 * 109.46908 * 59.99779 * 15 13 11 17 17 H 1.48500 * 109.47036 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46904 * 299.99974 * 15 13 11 19 19 C 1.46504 * 120.00038 * 5.05456 * 10 8 7 20 20 C 1.47196 * 109.47419 * 92.52184 * 19 10 8 21 21 N 5.61651 * 129.38779 * 194.13644 * 2 1 3 22 22 H 1.08997 * 109.47241 * 274.42912 * 1 2 3 23 23 H 1.09000 * 109.47195 * 34.42418 * 1 2 3 24 24 H 1.08996 * 109.47289 * 154.42740 * 1 2 3 25 25 H 1.08000 * 119.54770 * 0.03378 * 3 2 1 26 26 H 1.08007 * 119.55003 * 180.02562 * 5 4 3 27 27 H 1.08001 * 120.49812 * 179.97438 * 6 5 4 28 28 H 0.96997 * 120.00835 * 179.97438 * 14 13 11 29 29 H 1.08997 * 109.47135 * 212.51876 * 19 10 8 30 30 H 1.09002 * 109.46851 * 332.51636 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1900 0.0000 4 7 3.5263 1.1991 -0.0005 5 6 4.2341 0.0867 -0.0005 6 6 3.6151 -1.1477 -0.0006 7 6 2.2170 -1.2054 -0.0005 8 6 1.5094 -2.5051 -0.0017 9 8 0.6872 -2.7502 0.8596 10 7 1.7763 -3.4169 -0.9575 11 6 1.0504 -4.5746 -1.0203 12 1 0.1365 -4.6704 -0.4528 13 6 1.4893 -5.6285 -1.8151 14 7 2.7384 -5.6714 -2.2178 15 14 0.3016 -6.9830 -2.3095 16 1 -0.8243 -6.3970 -3.0803 17 1 1.0110 -7.9810 -3.1497 18 1 -0.2258 -7.6480 -1.0910 19 6 2.8441 -3.1683 -1.9293 20 6 4.1012 -3.7560 -1.4381 21 7 5.0711 -4.2094 -1.0602 22 1 -0.3633 0.0794 1.0246 23 1 -0.3633 0.8477 -0.5809 24 1 -0.3633 -0.9269 -0.4436 25 1 1.6690 2.1258 0.0006 26 1 5.3128 0.1416 -0.0005 27 1 4.2013 -2.0548 -0.0010 28 1 3.0446 -6.4065 -2.7717 29 1 2.5795 -3.6226 -2.8841 30 1 2.9724 -2.0939 -2.0612 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000471820669.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:11 Heat of formation + Delta-G solvation = 44.391670 kcal Electronic energy + Delta-G solvation = -17424.429509 eV Core-core repulsion = 14606.727080 eV Total energy + Delta-G solvation = -2817.702428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31300 -38.41697 -35.97982 -34.41960 -33.12058 -32.37001 -31.30966 -27.61840 -27.18235 -25.48205 -23.53552 -21.99236 -19.82146 -18.14149 -17.20866 -16.47096 -16.13631 -15.56429 -14.87337 -14.56093 -14.22247 -13.92757 -13.38559 -13.21908 -13.02076 -12.75621 -12.44239 -12.20660 -11.90539 -11.63613 -11.35686 -11.25449 -11.19458 -10.65053 -10.52543 -10.50843 -9.55837 -9.43021 -9.30461 -8.71588 -8.65728 -8.27425 -6.65885 -4.14812 1.28197 1.33066 3.02701 3.12907 3.15263 3.43411 3.65492 3.94332 4.01580 4.06807 4.55643 4.63265 4.76834 5.03688 5.10916 5.20083 5.28151 5.36619 5.68059 5.86392 5.90991 5.94266 6.00927 6.17465 6.38193 6.44134 6.59042 6.89087 7.30141 7.68051 8.10774 8.14346 8.73569 8.81322 9.00179 9.53275 10.37506 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.028730 B = 0.008464 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.364633 B = 3307.164410 C = 4034.004027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.091 3.909 4 N -0.483 5.483 5 C 0.087 3.913 6 C -0.151 4.151 7 C -0.055 4.055 8 C 0.484 3.516 9 O -0.563 6.563 10 N -0.427 5.427 11 C -0.312 4.312 12 H 0.113 0.887 13 C 0.033 3.967 14 N -0.876 5.876 15 Si 0.937 3.063 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.271 1.271 19 C 0.220 3.780 20 C 0.256 3.744 21 N -0.474 5.474 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.136 0.864 28 H 0.279 0.721 29 H 0.127 0.873 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 9.158 -2.308 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 C -0.067 4.067 4 N -0.191 5.191 5 C -0.069 4.069 6 C -0.171 4.171 7 C -0.066 4.066 8 C 0.272 3.728 9 O -0.446 6.446 10 N -0.145 5.145 11 C -0.439 4.439 12 H 0.131 0.869 13 C -0.171 4.171 14 N -0.514 5.514 15 Si 0.762 3.238 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.196 1.196 19 C 0.092 3.908 20 C -0.062 4.062 21 N -0.155 5.155 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.173 0.827 26 H 0.172 0.828 27 H 0.153 0.847 28 H 0.090 0.910 29 H 0.144 0.856 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.186 8.978 -1.463 9.099 hybrid contribution -1.036 -1.610 -0.451 1.967 sum -1.222 7.368 -1.913 7.710 Atomic orbital electron populations 1.20720 0.89735 1.03205 1.02848 1.20999 0.97904 0.92605 0.98813 1.22540 0.89846 0.97075 0.97209 1.67512 1.08225 1.31657 1.11744 1.22582 1.00149 0.87346 0.96842 1.22532 0.94311 1.00155 1.00153 1.20599 0.93709 0.94978 0.97359 1.17799 0.86966 0.84432 0.83579 1.90661 1.37310 1.79449 1.37147 1.43549 1.28986 1.17269 1.24711 1.19781 1.05566 0.90599 1.27950 0.86900 1.25366 0.96150 0.98573 0.97029 1.69604 1.13507 1.33193 1.35123 0.85811 0.79641 0.79353 0.78947 1.19477 1.20786 1.19622 1.18831 0.79782 0.97088 0.95054 1.28840 0.93304 0.91149 0.92877 1.80879 1.14505 1.11081 1.09022 0.90558 0.91597 0.90459 0.82740 0.82750 0.84677 0.91021 0.85565 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.36 36.01 0.34 -1.21 16 2 C -0.10 -1.61 5.93 -104.05 -0.62 -2.23 16 3 C 0.09 1.29 10.87 -17.60 -0.19 1.10 16 4 N -0.48 -7.41 10.34 -13.32 -0.14 -7.55 16 5 C 0.09 1.32 11.17 -17.60 -0.20 1.12 16 6 C -0.15 -2.61 7.86 -39.00 -0.31 -2.92 16 7 C -0.05 -1.03 4.71 -104.65 -0.49 -1.53 16 8 C 0.48 10.96 6.12 -12.27 -0.08 10.88 16 9 O -0.56 -14.46 15.80 5.31 0.08 -14.37 16 10 N -0.43 -9.82 2.58 -118.97 -0.31 -10.13 16 11 C -0.31 -7.78 9.39 -15.02 -0.14 -7.92 16 12 H 0.11 2.94 7.33 -52.49 -0.38 2.55 16 13 C 0.03 0.78 5.03 -17.45 -0.09 0.70 16 14 N -0.88 -21.26 8.69 55.50 0.48 -20.78 16 15 Si 0.94 19.03 29.59 -169.99 -5.03 14.00 16 16 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 C 0.22 4.40 4.76 -6.83 -0.03 4.37 16 20 C 0.26 5.61 10.51 -20.78 -0.22 5.40 16 21 N -0.47 -11.09 18.50 42.13 0.78 -10.31 16 22 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 24 H 0.08 1.29 6.74 -51.93 -0.35 0.94 16 25 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 26 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 27 H 0.14 2.51 5.36 -52.49 -0.28 2.22 16 28 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.13 2.54 6.60 -51.93 -0.34 2.20 16 30 H 0.08 1.38 5.91 -51.93 -0.31 1.07 16 LS Contribution 265.18 15.07 4.00 4.00 Total: -1.00 -29.32 265.18 -4.65 -33.96 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -2.49 Total: 3.42 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -2.02 Total: 7.76 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.82 Total: -48.76 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.37 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.32 -4.65 -33.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471820669.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.352 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds