Wall clock time and date at job start Sun Mar 29 2020 23:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47488 * 311.73480 * 3 2 1 5 5 C 1.36685 * 119.99649 * 262.30557 * 4 3 2 6 6 H 1.08000 * 120.00285 * 1.40417 * 5 4 3 7 7 C 1.39180 * 120.00048 * 181.40623 * 5 4 3 8 8 N 1.31273 * 119.99739 * 83.65633 * 7 5 4 9 9 Si 1.86797 * 120.00040 * 263.65333 * 7 5 4 10 10 H 1.48503 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46912 * 119.99856 * 9 7 5 12 12 H 1.48493 * 109.47123 * 239.99880 * 9 7 5 13 13 C 1.34772 * 120.00649 * 82.30131 * 4 3 2 14 14 O 1.21536 * 120.00381 * 186.60768 * 13 4 3 15 15 C 1.48322 * 119.99487 * 6.60363 * 13 4 3 16 16 N 1.32574 * 119.20180 * 354.30344 * 15 13 4 17 17 C 1.32084 * 120.75864 * 180.02562 * 16 15 13 18 18 C 1.38835 * 119.17518 * 359.97438 * 17 16 15 19 19 C 1.38792 * 118.52676 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.41186 * 179.97438 * 19 18 17 21 21 N 1.32113 * 119.17737 * 0.24220 * 19 18 17 22 22 H 4.40638 * 5.51315 * 179.97438 * 4 1 2 23 23 H 1.09000 * 109.46946 * 191.72693 * 3 2 1 24 24 H 1.09007 * 109.46855 * 71.73292 * 3 2 1 25 25 H 0.97001 * 119.99960 * 184.90667 * 8 7 5 26 26 H 1.07999 * 120.40953 * 180.02562 * 17 16 15 27 27 H 1.07998 * 120.73489 * 180.02562 * 18 17 16 28 28 H 1.08996 * 109.47540 * 89.99421 * 20 19 18 29 29 H 1.09005 * 109.47102 * 209.99640 * 20 19 18 30 30 H 1.08999 * 109.47098 * 329.99105 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9185 1.0307 5 6 3.5119 -0.4366 2.2529 6 1 3.4281 0.6187 2.4666 7 6 4.0039 -1.3060 3.2221 8 7 5.2705 -1.6505 3.2126 9 14 2.8618 -1.9822 4.5365 10 1 1.4933 -1.4448 4.3275 11 1 2.8296 -3.4644 4.4494 12 1 3.3543 -1.5757 5.8771 13 6 3.2127 -2.2393 0.7738 14 8 3.5027 -3.0153 1.6631 15 6 2.9445 -2.7457 -0.5942 16 7 2.5192 -1.9022 -1.5244 17 6 2.2704 -2.3201 -2.7524 18 6 2.4601 -3.6600 -3.0628 19 6 2.9061 -4.5149 -2.0646 20 6 3.1258 -5.9773 -2.3545 21 7 3.1307 -4.0318 -0.8556 22 1 -1.0498 0.0000 0.0003 23 1 3.0089 1.0070 0.2089 24 1 3.0095 -0.3213 -0.9759 25 1 5.5983 -2.3106 3.8433 26 1 1.9246 -1.6280 -3.5058 27 1 2.2648 -4.0288 -4.0589 28 1 4.1516 -6.1314 -2.6892 29 1 2.9479 -6.5579 -1.4493 30 1 2.4366 -6.3005 -3.1347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491023488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:25 Heat of formation + Delta-G solvation = 97.543481 kcal Electronic energy + Delta-G solvation = -17391.526744 eV Core-core repulsion = 14576.129151 eV Total energy + Delta-G solvation = -2815.397593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.04604 -39.95523 -36.64886 -35.39756 -34.84398 -33.29442 -33.18090 -29.57551 -28.31687 -27.41018 -25.08149 -23.80566 -22.13535 -19.40083 -19.29032 -18.39785 -17.62055 -16.91541 -16.84684 -16.31820 -15.95229 -15.62136 -15.35316 -14.46887 -14.39909 -14.24554 -14.09886 -13.70182 -13.64903 -13.13493 -13.13123 -12.70519 -12.13932 -11.79640 -11.57691 -11.34714 -10.94700 -10.74251 -10.57796 -10.30727 -9.85655 -9.67949 -9.03403 -5.56004 -0.31974 0.27582 1.21549 1.45160 1.48835 1.76399 2.05289 2.11361 2.20066 2.61448 2.70336 3.14502 3.29786 3.60649 3.72840 3.78585 4.13476 4.27312 4.49210 4.63372 4.64222 4.73111 4.88682 4.98524 5.16170 5.18511 5.23159 5.59999 5.75266 6.21953 6.48617 6.84470 7.00614 7.23639 7.36881 7.92538 8.22714 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.022844 B = 0.009546 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.390826 B = 2932.473075 C = 3664.966756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.185 3.815 4 N -0.367 5.367 5 C -0.489 4.489 6 H 0.115 0.885 7 C 0.187 3.813 8 N -0.713 5.713 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.297 1.297 12 H -0.262 1.262 13 C 0.395 3.605 14 O -0.614 6.614 15 C 0.296 3.704 16 N -0.522 5.522 17 C 0.135 3.865 18 C -0.225 4.225 19 C 0.147 3.853 20 C -0.098 4.098 21 N -0.536 5.536 22 H 0.246 0.754 23 H 0.094 0.906 24 H 0.150 0.850 25 H 0.289 0.711 26 H 0.212 0.788 27 H 0.194 0.806 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 -1.310 -14.543 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.190 4.190 3 C 0.063 3.937 4 N -0.079 5.079 5 C -0.608 4.608 6 H 0.133 0.867 7 C -0.047 4.047 8 N -0.335 5.335 9 Si 0.708 3.292 10 H -0.198 1.198 11 H -0.224 1.224 12 H -0.188 1.188 13 C 0.191 3.809 14 O -0.505 6.505 15 C 0.031 3.969 16 N -0.241 5.241 17 C -0.029 4.029 18 C -0.247 4.247 19 C 0.000 4.000 20 C -0.155 4.155 21 N -0.253 5.253 22 H 0.262 0.738 23 H 0.112 0.888 24 H 0.166 0.834 25 H 0.101 0.899 26 H 0.228 0.772 27 H 0.211 0.789 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.395 -1.323 -13.192 14.314 hybrid contribution -0.586 -0.731 0.212 0.961 sum -5.981 -2.054 -12.981 14.439 Atomic orbital electron populations 1.25467 0.96472 1.00657 1.01049 1.23663 0.95096 1.00309 0.99933 1.19474 0.84895 0.94297 0.95049 1.43675 1.47731 1.04803 1.11733 1.18869 1.54412 0.96174 0.91358 0.86747 1.25411 0.92766 0.89740 0.96782 1.70567 1.17255 1.16878 1.28756 0.86801 0.84360 0.78517 0.79511 1.19781 1.22438 1.18754 1.17115 0.94105 0.82866 0.86835 1.90426 1.59798 1.55015 1.45303 1.22724 0.93252 0.86522 0.94383 1.68743 1.15253 1.36874 1.03215 1.24166 0.90136 0.95669 0.92971 1.23182 1.03477 0.95156 1.02878 1.22606 0.90122 0.99629 0.87654 1.20865 1.04645 0.86568 1.03465 1.68083 1.18122 1.15219 1.23907 0.73814 0.88755 0.83380 0.89929 0.77157 0.78897 0.88659 0.91873 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.51 19.25 74.32 1.43 -6.08 16 2 C -0.19 -7.60 12.50 31.12 0.39 -7.21 16 3 C 0.18 7.91 5.51 84.57 0.47 8.38 16 4 N -0.37 -19.87 2.60 -648.23 -1.69 -21.56 16 5 C -0.49 -27.89 9.48 84.16 0.80 -27.09 16 6 H 0.12 6.21 8.01 -2.91 -0.02 6.19 16 7 C 0.19 10.82 2.99 85.00 0.25 11.07 16 8 N -0.71 -41.38 13.52 21.70 0.29 -41.09 16 9 Si 0.89 46.44 28.32 68.60 1.94 48.38 16 10 H -0.27 -14.45 7.11 99.48 0.71 -13.75 16 11 H -0.30 -16.93 7.11 99.48 0.71 -16.23 16 12 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.40 22.92 7.51 86.93 0.65 23.58 16 14 O -0.61 -40.22 12.93 -3.83 -0.05 -40.27 16 15 C 0.30 14.37 7.50 137.56 1.03 15.41 16 16 N -0.52 -20.04 5.14 -189.16 -0.97 -21.01 16 17 C 0.14 3.58 11.30 84.80 0.96 4.54 16 18 C -0.23 -5.30 9.87 22.55 0.22 -5.08 16 19 C 0.15 4.69 6.82 42.65 0.29 4.99 16 20 C -0.10 -2.17 10.22 71.24 0.73 -1.44 16 21 N -0.54 -24.67 10.07 -177.33 -1.79 -26.46 16 22 H 0.25 5.99 7.80 -4.43 -0.03 5.96 16 23 H 0.09 3.70 7.94 -2.39 -0.02 3.68 16 24 H 0.15 5.93 4.97 -18.49 -0.09 5.84 16 25 H 0.29 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.21 3.34 8.06 -2.91 -0.02 3.32 16 27 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.12 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -81.41 274.38 6.04 -75.37 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.08 Total: 5.57 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 7.22 Total: 21.05 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -4.15 Total: -110.11 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.05 Total: -40.27 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.94 Total: 48.38 kcal Total: -81.41 6.04 -75.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491023488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.914 kcal (2) G-P(sol) polarization free energy of solvation -81.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds