Wall clock time and date at job start Sun Mar 29 2020 23:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47245 * 248.43671 * 3 2 1 5 5 C 1.36766 * 120.00385 * 97.48403 * 4 3 2 6 6 H 1.08001 * 120.00280 * 157.93011 * 5 4 3 7 7 C 1.39055 * 119.99836 * 337.93518 * 5 4 3 8 8 N 1.31365 * 120.00170 * 5.42064 * 7 5 4 9 9 Si 1.86801 * 120.00053 * 185.42556 * 7 5 4 10 10 H 1.48497 * 109.47408 * 89.99705 * 9 7 5 11 11 H 1.48503 * 109.46994 * 209.99702 * 9 7 5 12 12 H 1.48496 * 109.46813 * 329.99446 * 9 7 5 13 13 C 1.34784 * 119.99908 * 277.20892 * 4 3 2 14 14 O 1.21830 * 119.99841 * 179.97438 * 13 4 3 15 15 C 1.41370 * 119.99647 * 0.02562 * 13 4 3 16 16 C 1.35695 * 119.99844 * 185.00531 * 15 13 4 17 17 C 1.41721 * 119.99725 * 7.98133 * 16 15 13 18 18 C 1.38138 * 126.94895 * 218.49649 * 17 16 15 19 19 N 1.33319 * 107.57197 * 179.97438 * 18 17 16 20 20 C 1.30829 * 109.79747 * 0.02562 * 19 18 17 21 21 N 1.34704 * 109.44162 * 359.72319 * 20 19 18 22 22 H 0.96994 * 126.45535 * 180.27079 * 21 20 19 23 23 H 4.40632 * 5.51452 * 179.97438 * 4 1 2 24 24 H 1.09002 * 109.47251 * 128.43039 * 3 2 1 25 25 H 1.09008 * 109.47493 * 8.43481 * 3 2 1 26 26 H 0.96997 * 120.00258 * 180.02562 * 8 7 5 27 27 H 1.07999 * 120.00264 * 5.00534 * 15 13 4 28 28 H 1.08000 * 120.00177 * 187.97528 * 16 15 13 29 29 H 1.07994 * 126.21641 * 0.02562 * 18 17 16 30 30 H 1.07997 * 125.27486 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5085 1.2845 5 6 3.5079 -0.3654 2.2679 6 1 4.1807 -0.0437 3.0491 7 6 3.0218 -1.6682 2.2619 8 7 2.2901 -2.0916 1.2565 9 14 3.4091 -2.8162 3.6837 10 1 2.3547 -2.6916 4.7219 11 1 3.4556 -4.2163 3.1909 12 1 4.7249 -2.4533 4.2685 13 6 3.2200 1.8370 1.4952 14 8 3.6255 2.2593 2.5636 15 6 2.8386 2.7402 0.4767 16 6 3.0200 4.0738 0.6498 17 6 3.7425 4.5509 1.7718 18 6 3.4616 5.6754 2.5234 19 7 4.3847 5.7599 3.4817 20 6 5.2242 4.7619 3.3775 21 7 4.8671 3.9822 2.3387 22 1 5.3161 3.1749 2.0430 23 1 -1.0500 0.0001 -0.0002 24 1 3.0091 0.6396 -0.8050 25 1 3.0099 -1.0158 -0.1507 26 1 1.9507 -3.0003 1.2524 27 1 2.4029 2.3689 -0.4390 28 1 2.6139 4.7717 -0.0675 29 1 2.6426 6.3610 2.3643 30 1 6.0693 4.5875 4.0269 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491155994.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:35 Heat of formation + Delta-G solvation = 137.627183 kcal Electronic energy + Delta-G solvation = -17241.404426 eV Core-core repulsion = 14427.744993 eV Total energy + Delta-G solvation = -2813.659433 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.27410 -38.91868 -35.60492 -33.23491 -32.27141 -31.63096 -31.25755 -28.31038 -26.66514 -25.10128 -22.87804 -20.79529 -20.43022 -18.65585 -18.04382 -17.41632 -16.61312 -16.18482 -14.84858 -14.29339 -14.22537 -14.11409 -13.75581 -13.23832 -12.80464 -12.73620 -12.61037 -12.40736 -11.71430 -11.38803 -11.26993 -10.73155 -10.50713 -9.86282 -9.68188 -9.46847 -9.42325 -9.00806 -8.96046 -8.36818 -8.02557 -7.27260 -6.50639 -4.08219 1.33437 3.03495 3.12634 3.15909 3.17315 3.61911 3.73487 3.88297 3.99710 4.01087 4.27844 4.90782 4.99569 5.22087 5.37378 5.57713 5.65767 5.88050 6.00414 6.12788 6.27146 6.52044 6.74819 6.83632 7.00155 7.05446 7.31449 7.32754 7.89628 8.10703 8.27029 8.64024 8.65580 8.93757 9.13421 9.75532 10.41204 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.007810 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.169474 B = 3584.383195 C = 4435.785709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.116 4.116 3 C 0.212 3.788 4 N -0.420 5.420 5 C -0.296 4.296 6 H 0.106 0.894 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.933 3.067 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.453 3.547 14 O -0.594 6.594 15 C -0.186 4.186 16 C -0.046 4.046 17 C 0.022 3.978 18 C -0.017 4.017 19 N -0.511 5.511 20 C 0.174 3.826 21 N -0.498 5.498 22 H 0.422 0.578 23 H 0.201 0.799 24 H 0.058 0.942 25 H 0.145 0.855 26 H 0.273 0.727 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.164 0.836 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 4.591 -4.829 6.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.117 4.117 3 C 0.089 3.911 4 N -0.135 5.135 5 C -0.424 4.424 6 H 0.123 0.877 7 C -0.174 4.174 8 N -0.504 5.504 9 Si 0.760 3.240 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.247 3.753 14 O -0.483 6.483 15 C -0.209 4.209 16 C -0.069 4.069 17 C -0.096 4.096 18 C -0.170 4.170 19 N -0.231 5.231 20 C -0.109 4.109 21 N -0.099 5.099 22 H 0.264 0.736 23 H 0.218 0.782 24 H 0.076 0.924 25 H 0.162 0.838 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.151 0.849 29 H 0.181 0.819 30 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.311 5.106 -3.745 6.741 hybrid contribution -0.377 -1.970 -0.115 2.009 sum 1.934 3.135 -3.860 5.336 Atomic orbital electron populations 1.24393 0.95524 1.05820 1.02688 1.23380 0.94518 0.95968 0.97876 1.18890 0.84075 1.03255 0.84877 1.43846 1.52587 1.04626 1.12454 1.19781 1.25675 0.91181 1.05719 0.87676 1.25494 0.95387 0.98318 0.98170 1.69843 1.33158 1.18533 1.28862 0.85803 0.79196 0.78477 0.80559 1.20152 1.20677 1.19268 1.16956 0.86761 0.82680 0.88904 1.90704 1.53129 1.76486 1.27931 1.22365 1.04236 0.94503 0.99768 1.20370 0.96809 0.94891 0.94793 1.18845 0.93862 0.96734 1.00166 1.22635 1.00668 0.98283 0.95422 1.69862 1.05565 1.23638 1.24024 1.24586 1.02151 0.90859 0.93303 1.43585 1.21794 1.21256 1.23303 0.73582 0.78190 0.92443 0.83828 0.91612 0.86164 0.84882 0.81916 0.78848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.33 19.25 29.55 0.57 -4.77 16 2 C -0.12 -2.52 11.48 -37.12 -0.43 -2.95 16 3 C 0.21 4.51 4.78 -6.83 -0.03 4.48 16 4 N -0.42 -10.05 2.60 -121.27 -0.32 -10.36 16 5 C -0.30 -7.63 9.32 -15.05 -0.14 -7.77 16 6 H 0.11 2.82 7.37 -52.49 -0.39 2.43 16 7 C 0.03 0.75 5.39 -17.45 -0.09 0.66 16 8 N -0.87 -21.30 8.75 55.50 0.49 -20.81 16 9 Si 0.93 19.82 29.56 -169.99 -5.02 14.79 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 C 0.45 10.39 6.89 -15.06 -0.10 10.29 16 14 O -0.59 -14.90 11.18 5.07 0.06 -14.84 16 15 C -0.19 -3.48 8.91 -39.30 -0.35 -3.83 16 16 C -0.05 -0.76 9.99 -39.16 -0.39 -1.15 16 17 C 0.02 0.40 5.43 -83.71 -0.45 -0.05 16 18 C -0.02 -0.31 11.92 -16.94 -0.20 -0.52 16 19 N -0.51 -9.81 11.19 -14.03 -0.16 -9.97 16 20 C 0.17 3.05 12.99 -90.41 -1.17 1.87 16 21 N -0.50 -9.13 3.99 -11.75 -0.05 -9.17 16 22 H 0.42 7.63 7.36 -40.82 -0.30 7.33 16 23 H 0.20 3.24 7.80 -54.09 -0.42 2.82 16 24 H 0.06 1.03 6.59 -51.93 -0.34 0.69 16 25 H 0.14 3.27 5.74 -51.92 -0.30 2.97 16 26 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 27 H 0.12 2.02 6.05 -52.49 -0.32 1.70 16 28 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.19 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 268.33 15.07 4.04 4.04 Total: -1.00 -30.53 268.33 -6.23 -36.76 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -2.47 Total: 13.30 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.80 Total: -3.73 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.03 Total: -50.32 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.06 Total: -14.84 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.53 -6.23 -36.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491155994.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.388 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds