Wall clock time and date at job start Sun Mar 29 2020 23:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47239 * 37.88086 * 3 2 1 5 5 C 1.36764 * 120.00129 * 270.00009 * 4 3 2 6 6 H 1.07993 * 120.00226 * 203.85551 * 5 4 3 7 7 C 1.39067 * 119.99720 * 23.84778 * 5 4 3 8 8 N 1.31360 * 120.00232 * 352.48325 * 7 5 4 9 9 Si 1.86806 * 119.99705 * 172.47449 * 7 5 4 10 10 H 1.48502 * 109.46808 * 60.00708 * 9 7 5 11 11 H 1.48499 * 109.46831 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47250 * 300.00421 * 9 7 5 13 13 C 1.34777 * 120.00426 * 89.99686 * 4 3 2 14 14 O 1.21845 * 119.99596 * 355.00082 * 13 4 3 15 15 C 1.41363 * 120.00443 * 175.27280 * 13 4 3 16 16 C 1.35691 * 120.00577 * 185.08231 * 15 13 4 17 17 C 1.41712 * 120.00503 * 185.20351 * 16 15 13 18 18 C 1.38139 * 126.95339 * 185.14113 * 17 16 15 19 19 N 1.33320 * 107.57292 * 179.97438 * 18 17 16 20 20 C 1.30818 * 109.79932 * 0.02562 * 19 18 17 21 21 N 1.34706 * 109.44349 * 359.72438 * 20 19 18 22 22 H 0.96998 * 126.46028 * 180.30935 * 21 20 19 23 23 H 4.40641 * 5.51246 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.46790 * 277.87507 * 3 2 1 25 25 H 1.09006 * 109.46699 * 157.88153 * 3 2 1 26 26 H 0.97000 * 119.99762 * 185.01555 * 8 7 5 27 27 H 1.08003 * 119.99969 * 5.08986 * 15 13 4 28 28 H 1.08003 * 119.99604 * 5.20150 * 16 15 13 29 29 H 1.07998 * 126.21882 * 0.02562 * 18 17 16 30 30 H 1.08006 * 125.28459 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0893 -0.8481 5 6 3.3634 -2.3253 -0.3091 6 1 4.0573 -3.0021 -0.7853 7 6 2.7024 -2.7104 0.8522 8 7 1.9740 -1.8396 1.5130 9 14 2.8501 -4.4664 1.4723 10 1 4.2756 -4.7742 1.7521 11 1 2.0563 -4.6197 2.7180 12 1 2.3352 -5.4010 0.4396 13 6 3.3594 -0.8741 -2.1595 14 8 3.0703 0.1991 -2.6589 15 6 3.9250 -1.8952 -2.9567 16 6 4.2466 -1.6459 -4.2512 17 6 4.7100 -2.6967 -5.0814 18 6 5.1680 -2.5886 -6.3802 19 7 5.5051 -3.8112 -6.7912 20 6 5.2873 -4.6762 -5.8342 21 7 4.8007 -4.0361 -4.7534 22 1 4.5581 -4.4395 -3.9053 23 1 -1.0498 -0.0001 -0.0003 24 1 3.0094 -0.1400 1.0180 25 1 3.0089 0.9529 -0.3870 26 1 1.5725 -2.0871 2.3606 27 1 4.1012 -2.8740 -2.5356 28 1 4.1492 -0.6464 -4.6488 29 1 5.2405 -1.6788 -6.9576 30 1 5.4729 -5.7382 -5.8990 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491155997.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:37 Heat of formation + Delta-G solvation = 95.124597 kcal Electronic energy + Delta-G solvation = -16655.275953 eV Core-core repulsion = 13839.773470 eV Total energy + Delta-G solvation = -2815.502483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.86248 -40.70014 -37.22401 -35.12260 -33.72237 -33.37904 -33.09810 -30.14759 -28.31621 -26.73289 -24.46600 -22.43404 -21.75526 -20.79252 -19.53726 -18.82750 -18.34160 -17.80700 -16.33851 -16.22135 -16.02001 -15.79806 -15.30323 -15.06542 -14.47897 -14.23814 -14.13486 -13.93689 -13.39762 -13.05923 -12.85168 -12.34308 -12.17935 -11.51332 -11.40301 -11.19167 -11.11188 -10.90065 -10.58540 -10.38394 -9.88629 -8.80303 -8.26026 -5.98142 -0.24668 1.42192 1.45168 1.55704 1.59645 2.01640 2.17850 2.21934 2.28752 2.41632 2.67362 3.15605 3.24924 3.81182 3.94646 4.10999 4.20609 4.32912 4.56167 4.64918 4.80739 4.89131 5.07251 5.35812 5.39799 5.50186 5.52760 5.69153 5.77001 6.35491 6.47786 7.02710 7.04045 7.13276 7.49470 7.91827 8.67174 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.006868 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.602451 B = 4075.877585 C = 5090.668318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.130 4.130 3 C 0.239 3.761 4 N -0.440 5.440 5 C -0.358 4.358 6 H 0.117 0.883 7 C -0.005 4.005 8 N -0.881 5.881 9 Si 0.997 3.003 10 H -0.260 1.260 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.472 3.528 14 O -0.647 6.647 15 C -0.199 4.199 16 C -0.004 4.004 17 C -0.026 4.026 18 C 0.012 3.988 19 N -0.533 5.533 20 C 0.211 3.789 21 N -0.554 5.554 22 H 0.434 0.566 23 H 0.233 0.767 24 H 0.110 0.890 25 H 0.057 0.943 26 H 0.271 0.729 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.191 0.809 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 -7.602 -5.673 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.132 4.132 3 C 0.117 3.883 4 N -0.156 5.156 5 C -0.485 4.485 6 H 0.134 0.866 7 C -0.208 4.208 8 N -0.518 5.518 9 Si 0.820 3.180 10 H -0.184 1.184 11 H -0.213 1.213 12 H -0.191 1.191 13 C 0.267 3.733 14 O -0.539 6.539 15 C -0.221 4.221 16 C -0.027 4.027 17 C -0.140 4.140 18 C -0.140 4.140 19 N -0.252 5.252 20 C -0.072 4.072 21 N -0.157 5.157 22 H 0.275 0.725 23 H 0.250 0.750 24 H 0.128 0.872 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.208 0.792 30 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.487 -7.312 -6.457 10.737 hybrid contribution -0.819 -0.424 1.990 2.193 sum 3.667 -7.735 -4.467 9.656 Atomic orbital electron populations 1.25073 0.96353 1.03736 1.04132 1.23499 0.95113 0.97364 0.97232 1.18193 0.84654 0.88867 0.96613 1.43850 1.54926 1.10512 1.06286 1.20042 1.25599 0.91503 1.11340 0.86575 1.26353 0.93982 1.03335 0.97178 1.70068 1.31372 1.35724 1.14603 0.84931 0.78836 0.76895 0.77380 1.18398 1.21346 1.19051 1.17439 0.84570 0.88993 0.82329 1.90659 1.60725 1.29540 1.73014 1.21865 1.04997 1.00163 0.95059 1.20511 0.93132 0.97223 0.91812 1.19147 1.12627 0.84638 0.97629 1.23340 1.01338 0.97140 0.92192 1.70076 1.23261 1.01032 1.30802 1.25891 0.98380 1.01192 0.81721 1.43537 1.48837 1.07052 1.16320 0.72531 0.75031 0.87248 0.92485 0.91799 0.85091 0.84379 0.79186 0.73155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.56 19.25 74.32 1.43 -11.13 16 2 C -0.13 -6.64 11.27 31.13 0.35 -6.29 16 3 C 0.24 12.15 5.13 84.58 0.43 12.58 16 4 N -0.44 -22.34 2.58 -655.74 -1.69 -24.03 16 5 C -0.36 -17.16 9.03 84.12 0.76 -16.40 16 6 H 0.12 4.97 6.00 -2.91 -0.02 4.95 16 7 C -0.01 -0.25 5.40 84.96 0.46 0.21 16 8 N -0.88 -44.30 8.37 21.68 0.18 -44.12 16 9 Si 1.00 36.74 29.56 68.60 2.03 38.77 16 10 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 11 H -0.29 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 13 C 0.47 23.26 7.38 85.01 0.63 23.89 16 14 O -0.65 -35.34 15.77 -4.81 -0.08 -35.41 16 15 C -0.20 -7.81 8.73 22.45 0.20 -7.61 16 16 C 0.00 -0.14 9.41 22.54 0.21 0.07 16 17 C -0.03 -0.74 6.78 38.98 0.26 -0.48 16 18 C 0.01 0.33 11.92 84.44 1.01 1.33 16 19 N -0.53 -13.89 11.19 -198.29 -2.22 -16.11 16 20 C 0.21 4.13 12.99 180.28 2.34 6.47 16 21 N -0.55 -12.26 6.01 -191.10 -1.15 -13.41 16 22 H 0.43 7.89 8.07 -92.71 -0.75 7.14 16 23 H 0.23 8.33 7.80 -4.43 -0.03 8.29 16 24 H 0.11 5.62 6.39 -2.39 -0.02 5.61 16 25 H 0.06 2.86 7.50 -2.38 -0.02 2.84 16 26 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 27 H 0.13 4.58 5.15 -2.91 -0.01 4.57 16 28 H 0.14 4.84 7.49 -2.91 -0.02 4.82 16 29 H 0.19 4.25 8.06 -2.91 -0.02 4.22 16 30 H 0.25 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -67.37 274.91 5.59 -61.77 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.43 Total: 29.90 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 8.08 Total: 2.64 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -4.88 Total: -97.67 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.08 Total: -35.41 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -67.37 5.59 -61.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491155997.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.899 kcal (2) G-P(sol) polarization free energy of solvation -67.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds