Wall clock time and date at job start Sun Mar 29 2020 22:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47457 * 2 1 4 4 C 1.42902 * 113.99923 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56415 * 4.31219 * 4 3 2 6 6 C 1.52997 * 117.49708 * 218.61858 * 4 3 2 7 7 C 1.53000 * 60.00347 * 252.51152 * 6 4 3 8 8 H 1.08990 * 117.49990 * 252.50929 * 7 6 4 9 9 N 1.46504 * 117.49545 * 107.48990 * 7 6 4 10 10 C 1.34773 * 119.99686 * 136.37993 * 9 7 6 11 11 O 1.21278 * 120.00384 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99720 * 179.97438 * 10 9 7 13 13 S 1.80996 * 109.47050 * 179.97438 * 12 10 9 14 14 C 1.76203 * 99.99956 * 180.02562 * 13 12 10 15 15 H 1.07996 * 120.00348 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00181 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00261 * 180.02562 * 16 14 13 18 18 Si 1.86812 * 119.99804 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47164 * 89.99635 * 18 16 14 20 20 H 1.48506 * 109.46675 * 209.99798 * 18 16 14 21 21 H 1.48494 * 109.46846 * 329.99482 * 18 16 14 22 22 H 1.09006 * 109.46943 * 299.99878 * 1 2 3 23 23 H 1.09003 * 109.47260 * 59.99394 * 1 2 3 24 24 H 1.08993 * 109.47675 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46943 * 240.00122 * 2 1 3 26 26 H 1.09003 * 109.47260 * 120.00606 * 2 1 3 27 27 H 1.09002 * 117.49910 * 145.02292 * 6 4 3 28 28 H 1.09002 * 117.49884 * 0.02562 * 6 4 3 29 29 H 0.97002 * 120.00179 * 316.37821 * 9 7 6 30 30 H 1.08997 * 109.47492 * 300.00218 * 12 10 9 31 31 H 1.09006 * 109.47102 * 60.00136 * 12 10 9 32 32 H 0.97007 * 119.99989 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.9771 0.5196 -0.0749 6 6 4.0518 2.5726 0.8464 7 6 4.0421 2.6875 -0.6793 8 1 4.9904 2.5547 -1.2000 9 7 3.1221 3.6573 -1.2787 10 6 3.5405 4.4498 -2.2853 11 8 4.6786 4.3605 -2.6946 12 6 2.5939 5.4471 -2.9024 13 16 3.4456 6.3536 -4.2172 14 6 2.1451 7.4180 -4.7468 15 1 1.1781 7.3685 -4.2686 16 6 2.3638 8.3210 -5.7781 17 7 1.3925 9.1164 -6.1734 18 14 4.0367 8.4072 -6.6049 19 1 4.0700 7.4672 -7.7540 20 1 4.2786 9.7900 -7.0894 21 1 5.0912 8.0332 -5.6286 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 5.0065 2.3643 1.3293 28 1 3.3737 3.2183 1.4043 29 1 2.2119 3.7290 -0.9512 30 1 1.7348 4.9223 -3.3200 31 1 2.2557 6.1476 -2.1388 32 1 1.5452 9.7472 -6.8944 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563502562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:51 Heat of formation + Delta-G solvation = -59.514187 kcal Electronic energy + Delta-G solvation = -15027.870648 eV Core-core repulsion = 12308.813724 eV Total energy + Delta-G solvation = -2719.056924 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.67246 -38.36602 -35.87669 -32.70048 -32.41564 -30.99727 -29.03837 -25.59916 -23.19241 -22.44678 -22.08021 -20.43217 -17.89822 -17.46252 -16.53895 -15.84900 -15.76147 -14.97484 -14.96134 -14.63218 -14.05790 -13.49429 -13.15747 -12.96660 -12.77765 -12.67518 -12.33151 -12.25616 -11.53478 -11.30895 -11.24965 -11.12144 -10.98793 -10.59731 -9.84862 -9.58732 -9.46748 -8.98573 -8.60920 -8.48184 -6.89644 -6.26998 -3.98606 2.73600 2.87001 3.12759 3.34126 3.38662 3.52273 3.67774 3.75957 4.35004 4.60331 4.64946 4.72988 4.76345 4.79851 5.02531 5.08217 5.12123 5.16124 5.28883 5.52890 5.56286 5.60735 5.79791 5.82693 5.87082 6.05428 6.55879 6.96218 7.67093 7.96142 8.44023 8.50842 9.19204 10.82281 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.038665 B = 0.004435 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.000291 B = 6311.290063 C = 6792.437588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.008 3.992 5 H 0.115 0.885 6 C -0.201 4.201 7 C 0.091 3.909 8 H 0.141 0.859 9 N -0.700 5.700 10 C 0.535 3.465 11 O -0.521 6.521 12 C -0.123 4.123 13 S -0.141 6.141 14 C -0.521 4.521 15 H 0.088 0.912 16 C 0.096 3.904 17 N -0.881 5.881 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.406 0.594 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 -17.506 14.218 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.273 6.273 4 C -0.052 4.052 5 H 0.133 0.867 6 C -0.240 4.240 7 C -0.017 4.017 8 H 0.159 0.841 9 N -0.352 5.352 10 C 0.321 3.679 11 O -0.396 6.396 12 C -0.274 4.274 13 S 0.085 5.915 14 C -0.669 4.669 15 H 0.106 0.894 16 C -0.113 4.113 17 N -0.518 5.518 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.241 0.759 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.757 -17.330 13.387 22.071 hybrid contribution -1.149 0.126 0.238 1.181 sum 1.608 -17.203 13.625 22.004 Atomic orbital electron populations 1.21760 0.93519 1.02378 1.03390 1.22536 0.95654 0.83315 1.00171 1.87800 1.18478 1.26905 1.94166 1.23302 0.82463 0.94637 1.04809 0.86736 1.24007 1.02871 1.02088 0.95028 1.22078 0.96019 0.91038 0.92555 0.84100 1.45209 1.15276 1.37994 1.36712 1.20308 0.88458 0.80510 0.78590 1.90682 1.19626 1.68250 1.61024 1.23269 1.01542 0.99727 1.02832 1.84762 1.20673 1.45193 1.40859 1.22329 0.98719 1.22672 1.23187 0.89362 1.24708 0.97285 0.93865 0.95409 1.69940 1.32110 1.21626 1.28075 0.86735 0.85082 0.78323 0.81719 1.19205 1.19945 1.15901 0.91814 0.91545 0.91008 0.93080 0.93264 0.87453 0.87811 0.75853 0.88370 0.88355 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.15 0.38 -0.70 16 2 C 0.06 0.47 6.53 37.15 0.24 0.72 16 3 O -0.36 -3.74 10.03 -35.23 -0.35 -4.09 16 4 C 0.01 0.07 6.44 -26.73 -0.17 -0.10 16 5 H 0.12 0.84 7.93 -51.93 -0.41 0.43 16 6 C -0.20 -1.89 10.40 -26.73 -0.28 -2.17 16 7 C 0.09 1.10 6.43 -67.93 -0.44 0.66 16 8 H 0.14 1.81 7.40 -51.93 -0.38 1.43 16 9 N -0.70 -9.92 5.47 -53.81 -0.29 -10.21 16 10 C 0.53 9.89 7.85 -10.99 -0.09 9.81 16 11 O -0.52 -11.43 15.43 5.56 0.09 -11.34 16 12 C -0.12 -2.46 6.16 36.01 0.22 -2.24 16 13 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 14 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 15 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 16 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 17 N -0.88 -26.80 13.97 55.49 0.78 -26.03 16 18 Si 0.86 21.95 27.74 -169.99 -4.72 17.23 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.41 5.05 8.39 -40.82 -0.34 4.71 16 30 H 0.10 1.84 8.14 -51.92 -0.42 1.41 16 31 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 32 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -33.79 295.10 -6.48 -40.27 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.52 Total: 1.54 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 0.09 Total: -6.19 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.48 Total: -36.24 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.27 Total: -15.44 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.79 -6.48 -40.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563502562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.241 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds