Wall clock time and date at job start Sun Mar 29 2020 22:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47457 * 2 1 4 4 C 1.42902 * 113.99923 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56415 * 4.31219 * 4 3 2 6 6 C 1.52997 * 117.49708 * 218.61858 * 4 3 2 7 7 C 1.53000 * 60.00347 * 252.51152 * 6 4 3 8 8 H 1.08990 * 117.49990 * 252.50929 * 7 6 4 9 9 N 1.46504 * 117.49545 * 107.48990 * 7 6 4 10 10 C 1.34773 * 119.99686 * 136.37993 * 9 7 6 11 11 O 1.21278 * 120.00384 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99720 * 179.97438 * 10 9 7 13 13 S 1.80996 * 109.47050 * 179.97438 * 12 10 9 14 14 C 1.76203 * 99.99956 * 180.02562 * 13 12 10 15 15 H 1.07996 * 120.00348 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00181 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00261 * 180.02562 * 16 14 13 18 18 Si 1.86812 * 119.99804 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47164 * 89.99635 * 18 16 14 20 20 H 1.48506 * 109.46675 * 209.99798 * 18 16 14 21 21 H 1.48494 * 109.46846 * 329.99482 * 18 16 14 22 22 H 1.09006 * 109.46943 * 299.99878 * 1 2 3 23 23 H 1.09003 * 109.47260 * 59.99394 * 1 2 3 24 24 H 1.08993 * 109.47675 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46943 * 240.00122 * 2 1 3 26 26 H 1.09003 * 109.47260 * 120.00606 * 2 1 3 27 27 H 1.09002 * 117.49910 * 145.02292 * 6 4 3 28 28 H 1.09002 * 117.49884 * 0.02562 * 6 4 3 29 29 H 0.97002 * 120.00179 * 316.37821 * 9 7 6 30 30 H 1.08997 * 109.47492 * 300.00218 * 12 10 9 31 31 H 1.09006 * 109.47102 * 60.00136 * 12 10 9 32 32 H 0.97007 * 119.99989 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.9771 0.5196 -0.0749 6 6 4.0518 2.5726 0.8464 7 6 4.0421 2.6875 -0.6793 8 1 4.9904 2.5547 -1.2000 9 7 3.1221 3.6573 -1.2787 10 6 3.5405 4.4498 -2.2853 11 8 4.6786 4.3605 -2.6946 12 6 2.5939 5.4471 -2.9024 13 16 3.4456 6.3536 -4.2172 14 6 2.1451 7.4180 -4.7468 15 1 1.1781 7.3685 -4.2686 16 6 2.3638 8.3210 -5.7781 17 7 1.3925 9.1164 -6.1734 18 14 4.0367 8.4072 -6.6049 19 1 4.0700 7.4672 -7.7540 20 1 4.2786 9.7900 -7.0894 21 1 5.0912 8.0332 -5.6286 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 5.0065 2.3643 1.3293 28 1 3.3737 3.2183 1.4043 29 1 2.2119 3.7290 -0.9512 30 1 1.7348 4.9223 -3.3200 31 1 2.2557 6.1476 -2.1388 32 1 1.5452 9.7472 -6.8944 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563502562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:50 Heat of formation + Delta-G solvation = -84.068388 kcal Electronic energy + Delta-G solvation = -15028.935398 eV Core-core repulsion = 12308.813724 eV Total energy + Delta-G solvation = -2720.121674 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87393 -39.37884 -36.79305 -34.68217 -33.90954 -31.66763 -30.54019 -27.86591 -23.78875 -23.37034 -22.97464 -21.70515 -19.92881 -18.39453 -17.97993 -17.12331 -16.83378 -16.48637 -16.41959 -15.80044 -15.58228 -14.96258 -14.72688 -14.20358 -13.88335 -13.56941 -13.35016 -13.29887 -13.01946 -12.97835 -12.66930 -12.37314 -12.09244 -11.87843 -11.80422 -11.17426 -11.08505 -10.55936 -10.32939 -9.65813 -9.00619 -8.51956 -6.23366 0.96610 1.31735 1.45941 1.46663 1.54546 2.10648 2.25299 2.53935 2.71458 2.86200 2.91523 3.70198 3.84006 3.92213 4.10532 4.20431 4.21631 4.40575 4.43841 4.49240 4.52405 4.81278 4.90319 4.98464 5.04669 5.28883 5.45909 5.70239 6.10838 6.26226 6.42374 6.92927 7.14468 8.60628 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.038665 B = 0.004435 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.000291 B = 6311.290063 C = 6792.437588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.376 6.376 4 C 0.025 3.975 5 H 0.142 0.858 6 C -0.182 4.182 7 C 0.052 3.948 8 H 0.130 0.870 9 N -0.681 5.681 10 C 0.539 3.461 11 O -0.561 6.561 12 C -0.111 4.111 13 S -0.170 6.170 14 C -0.532 4.532 15 H 0.061 0.939 16 C 0.047 3.953 17 N -0.917 5.917 18 Si 0.915 3.085 19 H -0.261 1.261 20 H -0.258 1.258 21 H -0.236 1.236 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.416 0.584 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 -19.167 15.513 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.295 6.295 4 C -0.035 4.035 5 H 0.159 0.841 6 C -0.221 4.221 7 C -0.054 4.054 8 H 0.148 0.852 9 N -0.332 5.332 10 C 0.325 3.675 11 O -0.440 6.440 12 C -0.262 4.262 13 S 0.056 5.944 14 C -0.680 4.680 15 H 0.079 0.921 16 C -0.159 4.159 17 N -0.555 5.555 18 Si 0.737 3.263 19 H -0.186 1.186 20 H -0.182 1.182 21 H -0.160 1.160 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.149 0.851 28 H 0.120 0.880 29 H 0.253 0.747 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.389 -19.018 14.726 24.291 hybrid contribution -1.474 0.522 -0.023 1.564 sum 1.914 -18.496 14.703 23.706 Atomic orbital electron populations 1.21785 0.93213 1.03426 1.02575 1.22737 0.95977 0.82298 1.01259 1.87778 1.18918 1.28689 1.94123 1.23424 0.82477 0.94907 1.02679 0.84066 1.24056 1.03894 1.01419 0.92704 1.22315 0.95925 0.92742 0.94467 0.85223 1.44981 1.16037 1.37044 1.35090 1.19934 0.87454 0.80711 0.79381 1.90667 1.20963 1.69647 1.62673 1.23252 1.01673 1.00036 1.01261 1.84648 1.20684 1.45465 1.43566 1.22474 0.98715 1.23543 1.23224 0.92067 1.25570 1.00797 0.93512 0.96012 1.70017 1.34102 1.22457 1.28946 0.85858 0.80626 0.79162 0.80671 1.18592 1.18201 1.16017 0.92056 0.92894 0.89085 0.92640 0.91450 0.85102 0.87992 0.74741 0.87037 0.86890 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.05 0.70 6.53 71.98 0.47 1.17 16 3 O -0.38 -6.99 10.03 -148.98 -1.49 -8.48 16 4 C 0.02 0.40 6.44 30.60 0.20 0.60 16 5 H 0.14 1.54 7.93 -2.39 -0.02 1.52 16 6 C -0.18 -2.90 10.40 30.59 0.32 -2.58 16 7 C 0.05 1.17 6.43 44.99 0.29 1.46 16 8 H 0.13 3.22 7.40 -2.39 -0.02 3.21 16 9 N -0.68 -18.37 5.47 -442.53 -2.42 -20.79 16 10 C 0.54 19.57 7.85 87.66 0.69 20.26 16 11 O -0.56 -24.55 15.43 -3.02 -0.05 -24.59 16 12 C -0.11 -4.39 6.16 71.24 0.44 -3.95 16 13 S -0.17 -8.77 18.55 -56.49 -1.05 -9.82 16 14 C -0.53 -31.50 10.04 67.95 0.68 -30.82 16 15 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 16 C 0.05 2.76 5.50 84.86 0.47 3.23 16 17 N -0.92 -56.40 13.97 21.65 0.30 -56.10 16 18 Si 0.92 45.33 27.74 68.60 1.90 47.23 16 19 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 22 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.13 1.49 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.42 9.64 8.39 -92.71 -0.78 8.87 16 30 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 31 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 32 H 0.28 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -73.00 295.10 1.79 -71.21 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.30 Total: 13.10 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 4.29 Total: -11.77 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -2.12 Total: -76.89 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.54 Total: -33.07 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.05 Total: -9.82 kcal Total: -73.00 1.79 -71.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563502562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.856 kcal (2) G-P(sol) polarization free energy of solvation -73.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds