Wall clock time and date at job start Sun Mar 29 2020 22:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.54849 * 2 1 4 4 C 1.54996 * 110.75273 * 122.97219 * 2 1 3 5 5 C 1.54806 * 102.09314 * 155.59247 * 4 2 1 6 6 H 1.09001 * 110.60051 * 97.84756 * 5 4 2 7 7 N 1.46495 * 110.48917 * 220.44094 * 5 4 2 8 8 C 1.34779 * 120.00299 * 201.22045 * 7 5 4 9 9 O 1.21283 * 119.99753 * 359.97438 * 8 7 5 10 10 C 1.50701 * 119.99843 * 180.02562 * 8 7 5 11 11 S 1.81001 * 109.46896 * 179.97438 * 10 8 7 12 12 C 1.76192 * 100.00053 * 179.97438 * 11 10 8 13 13 H 1.08000 * 120.00436 * 0.02562 * 12 11 10 14 14 C 1.38805 * 119.99929 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00253 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99752 * 179.72153 * 14 12 11 17 17 H 1.48497 * 109.47323 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46790 * 120.00306 * 16 14 12 19 19 H 1.48501 * 109.47364 * 240.00335 * 16 14 12 20 20 C 1.54103 * 104.18824 * 339.12146 * 5 4 2 21 21 O 1.43741 * 107.29098 * 357.97034 * 20 5 4 22 22 H 1.08999 * 109.46960 * 181.42415 * 1 2 3 23 23 H 1.09000 * 109.47652 * 301.42698 * 1 2 3 24 24 H 1.08999 * 109.47023 * 61.42888 * 1 2 3 25 25 H 1.08998 * 110.91014 * 37.38958 * 4 2 1 26 26 H 1.09004 * 110.90280 * 273.79180 * 4 2 1 27 27 H 0.97004 * 119.99811 * 21.22591 * 7 5 4 28 28 H 1.08998 * 109.46989 * 60.00366 * 10 8 7 29 29 H 1.08996 * 109.47123 * 299.99392 * 10 8 7 30 30 H 0.97000 * 120.00481 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.88087 * 117.39255 * 20 5 4 32 32 H 1.08999 * 109.87921 * 238.54790 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0792 -0.7888 1.2159 5 6 3.4831 -1.2128 0.7202 6 1 4.2449 -0.5295 1.0955 7 7 3.7797 -2.5865 1.1338 8 6 5.0575 -3.0106 1.1958 9 8 5.9618 -2.2551 0.9088 10 6 5.3625 -4.4240 1.6207 11 16 7.1533 -4.6861 1.6030 12 6 7.2216 -6.3674 2.1257 13 1 6.3093 -6.9026 2.3437 14 6 8.4480 -7.0043 2.2562 15 7 9.5599 -6.3522 1.9901 16 14 8.5208 -8.7844 2.8178 17 1 7.1433 -9.2848 3.0570 18 1 9.1709 -9.6086 1.7674 19 1 9.3061 -8.8752 4.0750 20 6 3.3853 -1.1208 -0.8150 21 8 2.0385 -0.7335 -1.1348 22 1 -0.3633 -1.0273 0.0255 23 1 -0.3634 0.5358 0.8769 24 1 -0.3633 0.4915 -0.9025 25 1 1.4605 -1.6615 1.4251 26 1 2.1540 -0.1473 2.0940 27 1 3.0564 -3.1909 1.3629 28 1 4.8868 -5.1213 0.9312 29 1 4.9805 -4.5911 2.6278 30 1 10.4170 -6.7971 2.0816 31 1 4.0845 -0.3719 -1.1867 32 1 3.6073 -2.0911 -1.2593 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572645905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:34 Heat of formation + Delta-G solvation = -115.716971 kcal Electronic energy + Delta-G solvation = -15283.207873 eV Core-core repulsion = 12561.713814 eV Total energy + Delta-G solvation = -2721.494060 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25387 -39.82044 -35.71120 -34.58943 -33.09254 -32.00978 -29.69276 -27.66216 -26.99572 -23.10765 -22.27819 -21.43387 -19.86511 -18.11481 -17.67104 -17.45187 -16.88522 -16.53310 -16.29668 -16.03880 -15.37106 -14.67954 -14.53443 -14.31051 -13.82317 -13.42215 -13.29271 -13.16572 -12.91761 -12.83099 -12.58715 -12.53981 -12.24404 -11.84617 -11.69995 -11.16270 -10.99255 -10.81019 -10.28329 -10.13216 -8.67443 -8.35341 -6.13427 1.25939 1.41563 1.46467 1.54657 1.57904 2.19335 2.27167 2.85657 2.99072 3.29881 3.44152 3.74015 3.89865 4.00376 4.05110 4.22710 4.29527 4.44284 4.49825 4.58720 4.68778 4.81652 4.86416 4.95602 5.10560 5.31134 5.41779 5.42607 5.88351 6.19602 6.44227 7.06243 7.18269 8.74112 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.065385 B = 0.004047 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.127331 B = 6917.372188 C = 7112.826861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 H 0.080 0.920 4 C -0.144 4.144 5 C 0.111 3.889 6 H 0.089 0.911 7 N -0.704 5.704 8 C 0.535 3.465 9 O -0.562 6.562 10 C -0.130 4.130 11 S -0.151 6.151 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 1.000 3.000 17 H -0.256 1.256 18 H -0.274 1.274 19 H -0.274 1.274 20 C 0.038 3.962 21 O -0.392 6.392 22 H 0.062 0.938 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.417 0.583 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.271 0.729 31 H 0.063 0.937 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.870 9.419 -0.382 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.006 3.994 3 H 0.098 0.902 4 C -0.181 4.181 5 C 0.006 3.994 6 H 0.108 0.892 7 N -0.359 5.359 8 C 0.321 3.679 9 O -0.440 6.440 10 C -0.281 4.281 11 S 0.076 5.924 12 C -0.694 4.694 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.548 5.548 16 Si 0.821 3.179 17 H -0.180 1.180 18 H -0.200 1.200 19 H -0.199 1.199 20 C -0.040 4.040 21 O -0.311 6.311 22 H 0.081 0.919 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.127 0.873 27 H 0.255 0.745 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.331 10.640 -1.058 21.222 hybrid contribution -0.472 -1.973 0.644 2.129 sum -18.803 8.667 -0.413 20.709 Atomic orbital electron populations 1.21784 0.91278 1.03305 1.03554 1.23377 0.96660 0.95558 0.83787 0.90169 1.23465 0.92792 1.02320 0.99559 1.22383 0.99255 0.83761 0.94033 0.89240 1.45826 1.06913 1.13835 1.69342 1.20121 0.83038 0.88536 0.76172 1.90698 1.46722 1.57049 1.49484 1.23375 1.02203 0.96493 1.06051 1.85572 1.01143 1.16464 1.89206 1.23243 0.96259 0.97280 1.52638 0.89875 1.26134 0.94097 1.04223 0.94717 1.70184 0.98506 1.39086 1.47002 0.84895 0.78993 0.76088 0.77896 1.18006 1.19977 1.19915 1.23541 0.84427 1.00700 0.95317 1.88894 1.27459 1.74274 1.40521 0.91864 0.88775 0.91940 0.88243 0.87264 0.74471 0.87228 0.86979 0.91980 0.91925 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.67 71.98 0.70 -0.88 16 2 C 0.06 0.97 3.97 31.28 0.12 1.10 16 3 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.14 -2.00 6.30 31.89 0.20 -1.80 16 5 C 0.11 2.47 3.35 45.98 0.15 2.62 16 6 H 0.09 2.27 7.67 -2.39 -0.02 2.26 16 7 N -0.70 -17.29 5.05 -437.85 -2.21 -19.50 16 8 C 0.54 19.27 7.84 87.66 0.69 19.95 16 9 O -0.56 -25.46 15.57 -3.04 -0.05 -25.50 16 10 C -0.13 -5.05 6.16 71.24 0.44 -4.62 16 11 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 12 C -0.55 -31.07 9.50 67.96 0.65 -30.43 16 13 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 14 C 0.01 0.74 5.49 84.86 0.47 1.20 16 15 N -0.91 -55.88 13.22 21.65 0.29 -55.60 16 16 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.04 0.94 7.50 72.36 0.54 1.48 16 21 O -0.39 -9.02 11.22 -148.98 -1.67 -10.69 16 22 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 1.14 7.66 -2.39 -0.02 1.12 16 26 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.42 7.40 8.35 -92.71 -0.77 6.62 16 28 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 29 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 30 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 2.05 7.93 -2.39 -0.02 2.03 16 Total: -1.00 -75.13 289.14 1.52 -73.62 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.34 Total: 13.08 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 3.96 Total: -11.36 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -1.92 Total: -75.09 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.72 Total: -36.19 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -75.13 1.52 -73.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572645905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.101 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds