Wall clock time and date at job start Sun Mar 29 2020 22:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47034 * 2 1 4 4 O 1.42893 * 109.47139 * 239.99683 * 2 1 3 5 5 C 1.52997 * 109.46748 * 119.99337 * 2 1 3 6 6 N 1.46497 * 115.55263 * 302.80280 * 5 2 1 7 7 C 1.34776 * 120.00045 * 279.62117 * 6 5 2 8 8 O 1.21285 * 119.99680 * 354.78411 * 7 6 5 9 9 C 1.50696 * 120.00099 * 174.78018 * 7 6 5 10 10 S 1.81007 * 109.47128 * 180.02562 * 9 7 6 11 11 C 1.76197 * 99.99892 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00308 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00194 * 180.02562 * 11 10 9 14 14 N 1.31633 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00403 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47088 * 90.00065 * 15 13 11 17 17 H 1.48496 * 109.47099 * 209.99773 * 15 13 11 18 18 H 1.48501 * 109.47019 * 329.99961 * 15 13 11 19 19 C 1.53005 * 117.51795 * 88.50657 * 5 2 1 20 20 C 1.52998 * 59.99938 * 107.47708 * 19 5 2 21 21 H 1.08994 * 109.47497 * 295.89713 * 1 2 3 22 22 H 1.08998 * 109.46727 * 55.90083 * 1 2 3 23 23 H 1.08996 * 109.46699 * 175.89613 * 1 2 3 24 24 H 0.96700 * 114.00319 * 299.99481 * 4 2 1 25 25 H 0.96996 * 119.99856 * 99.35177 * 6 5 2 26 26 H 1.09001 * 109.47412 * 300.00071 * 9 7 6 27 27 H 1.09004 * 109.47170 * 60.00185 * 9 7 6 28 28 H 0.97000 * 120.00338 * 180.02562 * 14 13 11 29 29 H 1.08994 * 117.50199 * 214.96860 * 19 5 2 30 30 H 1.09004 * 117.49784 * 359.97438 * 19 5 2 31 31 H 1.09004 * 117.49963 * 252.50653 * 20 19 5 32 32 H 1.09000 * 117.49620 * 107.49524 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 7 1.5755 -0.1761 2.5273 7 6 2.1722 0.9123 3.0525 8 8 3.1527 1.3842 2.5167 9 6 1.6210 1.5431 4.3052 10 16 2.6327 2.9751 4.7551 11 6 1.7881 3.5016 6.2091 12 1 0.9191 2.9612 6.5545 13 6 2.2389 4.6116 6.9099 14 7 3.2976 5.2706 6.4887 15 14 1.3431 5.1703 8.4510 16 1 1.9282 4.4938 9.6364 17 1 1.4850 6.6409 8.6003 18 1 -0.0959 4.8204 8.3414 19 6 2.2422 -2.2350 1.1587 20 6 3.4544 -1.3025 1.2015 21 1 -0.3634 0.4488 0.9244 22 1 -0.3633 0.5761 -0.8510 23 1 -0.3632 -1.0250 -0.0735 24 1 1.7212 -1.5953 -1.2328 25 1 0.8360 -0.5962 2.9936 26 1 0.5946 1.8649 4.1288 27 1 1.6393 0.8155 5.1167 28 1 3.6129 6.0461 6.9787 29 1 2.0297 -2.8255 2.0499 30 1 2.0116 -2.7176 0.2089 31 1 4.0216 -1.1716 0.2799 32 1 4.0394 -1.2795 2.1210 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598384474.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:31 Heat of formation + Delta-G solvation = -65.604925 kcal Electronic energy + Delta-G solvation = -15572.366209 eV Core-core repulsion = 12853.045171 eV Total energy + Delta-G solvation = -2719.321038 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08289 -38.06172 -35.49287 -32.73861 -32.43951 -30.73531 -28.87837 -25.50671 -24.17940 -22.69378 -21.14504 -19.55724 -17.89287 -17.41689 -16.44652 -16.11110 -15.21907 -14.85963 -14.80866 -14.49269 -14.07172 -13.53742 -13.17343 -12.75903 -12.59350 -12.12335 -12.07553 -11.66695 -11.51374 -11.09244 -11.06686 -11.03532 -10.77471 -10.54034 -10.01718 -9.81967 -9.36229 -9.08138 -8.86686 -8.25399 -6.51653 -6.22916 -3.93770 2.91029 3.05584 3.21462 3.25701 3.29743 3.53713 3.64128 4.18389 4.19157 4.44388 4.70897 4.78769 5.04484 5.10957 5.12349 5.26302 5.37377 5.41970 5.60146 5.70164 5.85587 5.93798 5.94563 6.02333 6.05129 6.10885 6.65103 7.42029 7.58119 7.67149 8.33755 8.60030 9.22400 10.84508 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.050592 B = 0.004672 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.318943 B = 5991.541379 C = 6066.041804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.133 3.867 3 H 0.110 0.890 4 O -0.554 6.554 5 C 0.070 3.930 6 N -0.706 5.706 7 C 0.533 3.467 8 O -0.506 6.506 9 C -0.153 4.153 10 S -0.058 6.058 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.180 4.180 20 C -0.149 4.149 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.369 0.631 25 H 0.400 0.600 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.269 0.731 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 -14.851 -10.015 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.072 3.928 3 H 0.128 0.872 4 O -0.359 6.359 5 C -0.019 4.019 6 N -0.362 5.362 7 C 0.319 3.681 8 O -0.378 6.378 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.218 4.218 20 C -0.187 4.187 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.217 0.783 25 H 0.235 0.765 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.476 -13.296 -11.006 17.831 hybrid contribution -2.391 -0.919 2.134 3.335 sum -6.868 -14.215 -8.871 18.109 Atomic orbital electron populations 1.22403 0.95854 1.02248 1.03128 1.21534 0.92884 0.96682 0.81682 0.87190 1.86666 1.77343 1.28834 1.43043 1.21335 1.00818 0.93351 0.86372 1.45320 1.38011 1.31350 1.21513 1.20385 0.83205 0.79183 0.85342 1.90719 1.24544 1.61232 1.61335 1.23540 1.05239 1.04686 0.96920 1.85419 1.37912 1.26808 1.33025 1.22867 1.16791 1.16819 1.12012 0.90943 1.24988 0.95128 0.95372 0.98036 1.70016 1.22566 1.18653 1.39037 0.86168 0.79660 0.77914 0.81760 1.20260 1.20727 1.19698 1.23300 1.03836 0.91310 1.03342 1.23185 0.90668 1.00438 1.04359 0.91183 0.91720 0.92412 0.78348 0.76515 0.89181 0.89303 0.92154 0.88245 0.88228 0.87495 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.46 37.16 0.35 -1.36 16 2 C 0.13 1.57 3.91 -26.73 -0.10 1.47 16 3 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 4 O -0.55 -6.03 12.39 -35.23 -0.44 -6.46 16 5 C 0.07 0.83 1.69 -131.82 -0.22 0.61 16 6 N -0.71 -9.27 4.88 -47.61 -0.23 -9.50 16 7 C 0.53 9.75 7.78 -10.99 -0.09 9.67 16 8 O -0.51 -11.32 15.43 5.55 0.09 -11.23 16 9 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 10 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 11 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 12 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 15 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.18 -1.59 9.82 -26.73 -0.26 -1.85 16 20 C -0.15 -1.83 9.25 -26.73 -0.25 -2.08 16 21 H 0.07 0.71 7.72 -51.93 -0.40 0.31 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.37 2.51 7.16 45.56 0.33 2.84 16 25 H 0.40 4.06 8.83 -40.82 -0.36 3.70 16 26 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 27 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.63 6.48 -51.93 -0.34 0.29 16 31 H 0.11 1.31 7.75 -51.93 -0.40 0.91 16 32 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 291.48 15.07 4.39 4.39 Total: -1.00 -34.15 291.48 -6.52 -40.67 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -3.68 Total: 4.31 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.15 Total: -9.28 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.50 Total: -34.91 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.35 Total: -17.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.15 -6.52 -40.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598384474.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.937 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds