Wall clock time and date at job start Sun Mar 29 2020 23:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38065 * 119.56143 * 2 1 4 4 C 1.39685 * 119.02240 * 180.24824 * 3 2 1 5 5 C 1.48490 * 120.90012 * 179.73001 * 4 3 2 6 6 N 1.30722 * 126.40987 * 359.74030 * 5 4 3 7 7 O 1.21293 * 110.10222 * 179.97438 * 6 5 4 8 8 C 1.33662 * 110.02041 * 0.02562 * 7 6 5 9 9 C 1.50706 * 126.44369 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47008 * 269.97851 * 9 8 7 11 11 H 1.08005 * 120.00433 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99784 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00359 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47415 * 89.99430 * 14 12 10 16 16 H 1.48505 * 109.46925 * 209.99833 * 14 12 10 17 17 H 1.48505 * 109.46770 * 329.99294 * 14 12 10 18 18 N 1.30973 * 107.11637 * 0.02562 * 8 7 6 19 19 C 1.39726 * 118.19742 * 359.45594 * 4 3 2 20 20 C 1.38018 * 119.02421 * 0.27136 * 19 4 3 21 21 N 1.31875 * 119.56142 * 179.69239 * 2 1 3 22 22 H 1.08997 * 109.46932 * 270.30489 * 1 2 3 23 23 H 1.08994 * 109.46654 * 30.30605 * 1 2 3 24 24 H 1.09004 * 109.46666 * 150.30634 * 1 2 3 25 25 H 1.07995 * 120.48874 * 359.97438 * 3 2 1 26 26 H 1.09006 * 109.46686 * 29.97136 * 9 8 7 27 27 H 1.08997 * 109.47553 * 149.97087 * 9 8 7 28 28 H 0.97000 * 119.99718 * 179.97438 * 13 12 10 29 29 H 1.07994 * 120.48864 * 180.30037 * 19 4 3 30 30 H 1.08002 * 119.55991 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2009 0.0000 4 6 3.5850 1.1878 -0.0053 5 6 4.3594 2.4547 -0.0115 6 7 3.8665 3.6654 -0.0175 7 8 4.7643 4.4810 -0.0210 8 6 5.9475 3.8592 -0.0180 9 6 7.3040 4.5158 -0.0213 10 6 7.7562 4.7273 -1.4431 11 1 7.1248 4.4169 -2.2625 12 6 8.9766 5.3162 -1.6980 13 7 9.7458 5.6937 -0.7002 14 14 9.5376 5.5777 -3.4605 15 1 9.0766 6.9073 -3.9346 16 1 11.0201 5.5168 -3.5222 17 1 8.9622 4.5167 -4.3257 18 7 5.7063 2.5718 -0.0129 19 6 4.2336 -0.0498 0.0013 20 6 3.4755 -1.2031 0.0070 21 7 2.1576 -1.1471 0.0062 22 1 -0.3633 0.0055 1.0276 23 1 -0.3632 0.8872 -0.5186 24 1 -0.3633 -0.8928 -0.5091 25 1 1.6490 2.1367 -0.0004 26 1 7.2430 5.4779 0.4875 27 1 8.0187 3.8759 0.4961 28 1 10.6045 6.1077 -0.8795 29 1 5.3122 -0.1031 0.0024 30 1 3.9679 -2.1643 0.0117 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697767935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:52 Heat of formation + Delta-G solvation = 70.260675 kcal Electronic energy + Delta-G solvation = -16275.692420 eV Core-core repulsion = 13459.111756 eV Total energy + Delta-G solvation = -2816.580664 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.55277 -41.29504 -37.15723 -35.96201 -34.42949 -33.85667 -32.81140 -30.43367 -28.62280 -26.24183 -26.06710 -24.54285 -23.18544 -21.89821 -19.37978 -18.78732 -18.32848 -17.40860 -17.32051 -16.73021 -16.55713 -15.56252 -15.20336 -14.99211 -14.48436 -14.37637 -14.08713 -13.66166 -13.34676 -13.10575 -13.04328 -12.90619 -12.79173 -12.63258 -12.21464 -12.04183 -12.00242 -11.24682 -10.70572 -10.68475 -10.40810 -10.03379 -8.32715 -6.46231 -0.57026 0.00600 0.33311 1.37916 1.43583 1.45283 1.55291 1.85919 2.32251 2.39874 2.69326 2.87931 3.04960 3.29416 3.73161 3.86251 3.93848 4.06017 4.41272 4.45795 4.64044 4.70916 4.75324 4.78372 4.98383 5.06888 5.11932 5.16846 5.18605 5.56803 5.57784 5.84843 6.58001 6.83647 7.04708 7.22943 8.78059 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040610 B = 0.004561 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.314171 B = 6138.164216 C = 6328.056336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.126 3.874 3 C -0.146 4.146 4 C 0.015 3.985 5 C 0.193 3.807 6 N -0.394 5.394 7 O 0.064 5.936 8 C 0.239 3.761 9 C 0.109 3.891 10 C -0.546 4.546 11 H 0.053 0.947 12 C 0.025 3.975 13 N -0.914 5.914 14 Si 0.969 3.031 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.273 1.273 18 N -0.507 5.507 19 C -0.145 4.145 20 C 0.112 3.888 21 N -0.489 5.489 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.146 0.854 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.273 0.727 29 H 0.147 0.853 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 -9.831 1.386 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.012 4.012 3 C -0.168 4.168 4 C 0.005 3.995 5 C -0.077 4.077 6 N -0.106 5.106 7 O 0.008 5.992 8 C 0.021 3.979 9 C 0.070 3.930 10 C -0.584 4.584 11 H 0.071 0.929 12 C -0.177 4.177 13 N -0.552 5.552 14 Si 0.793 3.207 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.197 1.197 18 N -0.241 5.241 19 C -0.167 4.167 20 C -0.044 4.044 21 N -0.200 5.200 22 H 0.112 0.888 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.164 0.836 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.327 -10.733 1.453 17.960 hybrid contribution 1.406 1.405 -0.682 2.102 sum -12.920 -9.328 0.771 15.954 Atomic orbital electron populations 1.20823 0.85685 1.04728 1.04467 1.21738 0.98890 0.86870 0.93660 1.22126 0.92224 1.01145 1.01287 1.17910 0.92741 0.88136 1.00688 1.24255 0.88039 0.93708 1.01675 1.74721 1.13026 1.00233 1.22643 1.85244 1.13193 1.34516 1.66230 1.29784 0.92038 0.86553 0.89562 1.17993 0.79584 0.96165 0.99241 1.21002 1.04329 1.42358 0.90759 0.92891 1.25702 0.95814 0.94108 1.02047 1.69998 1.11892 1.40325 1.32990 0.85379 0.77690 0.78865 0.78742 1.19338 1.19937 1.19725 1.72036 1.12213 1.16524 1.23278 1.22373 1.02809 0.91601 0.99917 1.23214 0.88743 0.98969 0.93480 1.67587 1.10651 1.29482 1.12261 0.88801 0.89133 0.89499 0.83586 0.92397 0.92254 0.91737 0.83525 0.78515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.16 71.24 0.72 -0.77 16 2 C 0.13 2.90 6.78 42.51 0.29 3.19 16 3 C -0.15 -3.95 9.42 22.58 0.21 -3.73 16 4 C 0.01 0.48 5.91 -19.83 -0.12 0.36 16 5 C 0.19 7.63 7.83 137.34 1.08 8.70 16 6 N -0.39 -15.92 11.95 -59.21 -0.71 -16.63 16 7 O 0.06 2.73 11.29 74.67 0.84 3.58 16 8 C 0.24 10.77 7.69 88.36 0.68 11.45 16 9 C 0.11 5.32 5.60 29.10 0.16 5.49 16 10 C -0.55 -29.10 9.09 25.60 0.23 -28.87 16 11 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 12 C 0.02 1.29 5.46 84.65 0.46 1.75 16 13 N -0.91 -49.98 13.29 21.45 0.28 -49.69 16 14 Si 0.97 41.56 29.54 68.60 2.03 43.58 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 N -0.51 -22.11 11.36 -302.59 -3.44 -25.55 16 19 C -0.15 -4.03 9.80 22.58 0.22 -3.81 16 20 C 0.11 2.53 11.17 84.63 0.95 3.47 16 21 N -0.49 -11.82 10.26 -184.10 -1.89 -13.71 16 22 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 24 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.15 3.69 7.96 -2.91 -0.02 3.67 16 26 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16 27 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.15 4.06 7.97 -2.91 -0.02 4.04 16 30 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -60.48 278.59 3.17 -57.31 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.16 Total: 3.88 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.89 Total: -2.76 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -5.75 Total: -105.58 kcal Atomic # 8 Polarization: 2.73 SS G_CDS: 0.84 Total: 3.58 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -60.48 3.17 -57.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697767935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.570 kcal (2) G-P(sol) polarization free energy of solvation -60.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds