Wall clock time and date at job start Sun Mar 29 2020 23:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34852 * 119.67974 * 2 1 4 4 C 1.40567 * 120.33825 * 179.97438 * 3 2 1 5 5 C 1.35899 * 119.73143 * 359.97438 * 4 3 2 6 6 C 1.41174 * 119.35092 * 359.97438 * 5 4 3 7 7 N 1.32252 * 132.03229 * 180.02562 * 6 5 4 8 8 C 1.34601 * 109.02664 * 179.97438 * 7 6 5 9 9 C 1.47480 * 125.92146 * 180.25934 * 8 7 6 10 10 O 1.21634 * 119.99556 * 179.69234 * 9 8 7 11 11 N 1.34775 * 120.00683 * 359.69211 * 9 8 7 12 12 C 1.36917 * 120.00241 * 180.02562 * 11 9 8 13 13 H 1.07992 * 119.99804 * 359.97438 * 12 11 9 14 14 C 1.39003 * 119.99797 * 180.02562 * 12 11 9 15 15 N 1.31396 * 120.00238 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00281 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47554 * 89.99576 * 16 14 12 18 18 H 1.48496 * 109.47191 * 209.99968 * 16 14 12 19 19 H 1.48502 * 109.46913 * 329.99999 * 16 14 12 20 20 C 1.36675 * 108.14467 * 359.97438 * 8 7 6 21 21 N 1.36203 * 107.08395 * 0.02562 * 20 8 7 22 22 H 1.08996 * 109.47485 * 270.00303 * 1 2 3 23 23 H 1.09001 * 109.47108 * 30.00250 * 1 2 3 24 24 H 1.09004 * 109.47214 * 150.00245 * 1 2 3 25 25 H 1.07998 * 119.83036 * 359.96809 * 3 2 1 26 26 H 1.08004 * 120.13073 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.32645 * 179.97438 * 5 4 3 28 28 H 0.97004 * 119.99861 * 359.97438 * 11 9 8 29 29 H 0.96993 * 120.00133 * 180.02562 * 15 14 12 30 30 H 1.07997 * 126.45452 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1748 1.1716 0.0000 4 6 3.5804 1.1878 0.0005 5 6 4.2678 0.0155 0.0016 6 6 3.5564 -1.2039 0.0027 7 7 3.9587 -2.4638 0.0043 8 6 2.8800 -3.2688 0.0053 9 6 2.9010 -4.7435 0.0126 10 8 1.8563 -5.3664 0.0185 11 7 4.0775 -5.4009 0.0126 12 6 4.0968 -6.7699 0.0189 13 1 3.1693 -7.3229 0.0241 14 6 5.3104 -7.4478 0.0195 15 7 5.3290 -8.7616 0.0259 16 14 6.9148 -6.4911 0.0111 17 1 7.3431 -6.2305 1.4089 18 1 7.9593 -7.2824 -0.6873 19 1 6.7173 -5.1996 -0.6949 20 6 1.7621 -2.4826 0.0049 21 7 2.1838 -1.1875 0.0031 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6268 2.1022 -0.0005 26 1 4.1117 2.1280 0.0001 27 1 5.3478 0.0167 0.0016 28 1 4.9107 -4.9041 0.0076 29 1 6.1758 -9.2346 0.0268 30 1 0.7375 -2.8239 0.0052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701297779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:31 Heat of formation + Delta-G solvation = 53.278801 kcal Electronic energy + Delta-G solvation = -16693.629581 eV Core-core repulsion = 13876.312528 eV Total energy + Delta-G solvation = -2817.317053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.66587 -38.38508 -37.08204 -34.22617 -33.95252 -31.79469 -31.12449 -29.18336 -27.32884 -25.63228 -23.11770 -22.55712 -21.27184 -19.29551 -18.48315 -17.74540 -16.41456 -16.10845 -15.99193 -14.99328 -14.76628 -14.24378 -13.90447 -13.80077 -13.38607 -13.18908 -12.96169 -12.66689 -12.42826 -12.13345 -11.65140 -11.41108 -11.14766 -10.90648 -10.51640 -10.10092 -9.92579 -9.59569 -8.73172 -8.62146 -8.19156 -7.73816 -6.38279 -3.82349 0.66552 1.32386 2.54463 2.59028 3.14341 3.19038 3.21027 3.47831 4.11677 4.16334 4.27982 4.33543 4.57486 4.70399 4.88103 4.97294 5.15217 5.22928 5.30979 5.42488 5.53908 5.63419 5.82491 5.91427 6.05034 6.12463 6.49369 6.75168 7.13404 7.53542 7.94110 8.12470 8.59133 8.89596 9.40520 9.84130 10.73031 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036900 B = 0.005964 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.623981 B = 4693.848707 C = 5437.324246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.091 3.909 3 C -0.155 4.155 4 C -0.106 4.106 5 C -0.081 4.081 6 C 0.219 3.781 7 N -0.476 5.476 8 C 0.047 3.953 9 C 0.511 3.489 10 O -0.581 6.581 11 N -0.555 5.555 12 C -0.301 4.301 13 H 0.124 0.876 14 C 0.046 3.954 15 N -0.867 5.867 16 Si 0.876 3.124 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.260 1.260 20 C -0.045 4.045 21 N -0.362 5.362 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.146 0.854 26 H 0.139 0.861 27 H 0.149 0.851 28 H 0.382 0.618 29 H 0.277 0.723 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 22.192 -0.066 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.013 4.013 3 C -0.176 4.176 4 C -0.129 4.129 5 C -0.101 4.101 6 C -0.025 4.025 7 N -0.198 5.198 8 C -0.087 4.087 9 C 0.297 3.703 10 O -0.466 6.466 11 N -0.190 5.190 12 C -0.430 4.430 13 H 0.142 0.858 14 C -0.159 4.159 15 N -0.506 5.506 16 Si 0.701 3.299 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.185 1.185 20 C -0.179 4.179 21 N -0.036 5.036 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.164 0.836 26 H 0.157 0.843 27 H 0.167 0.833 28 H 0.217 0.783 29 H 0.087 0.913 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.964 21.169 -0.062 21.537 hybrid contribution 0.567 0.859 -0.008 1.029 sum -3.398 22.027 -0.070 22.288 Atomic orbital electron populations 1.20939 0.88082 1.04546 1.03921 1.20300 0.95131 0.83888 1.01949 1.20518 0.94727 0.96299 1.06020 1.20931 0.93662 0.98131 1.00218 1.20271 1.00592 0.87707 1.01529 1.21017 0.80089 0.94648 1.06776 1.70927 1.29336 0.97955 1.21621 1.21222 0.88297 0.95540 1.03598 1.16293 0.84702 0.82907 0.86382 1.90656 1.31799 1.66829 1.57273 1.42097 1.06727 1.07498 1.62700 1.19553 0.96841 0.79282 1.47295 0.85816 1.25097 0.98291 0.95596 0.96920 1.69618 1.27552 1.06233 1.47182 0.86679 0.83320 0.80423 0.79483 1.19234 1.19920 1.18529 1.22487 1.01331 0.79768 1.14269 1.42718 1.08808 1.05570 1.46458 0.89737 0.89349 0.90401 0.83599 0.84274 0.83319 0.78322 0.91285 0.79189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.84 36.01 0.35 -0.55 16 2 C 0.09 1.02 6.78 -81.63 -0.55 0.46 16 3 C -0.15 -1.38 9.58 -39.90 -0.38 -1.76 16 4 C -0.11 -0.98 10.06 -39.54 -0.40 -1.38 16 5 C -0.08 -1.01 10.11 -39.31 -0.40 -1.41 16 6 C 0.22 3.71 7.79 -156.03 -1.22 2.50 16 7 N -0.48 -9.84 11.01 -9.35 -0.10 -9.95 16 8 C 0.05 1.02 6.94 -83.45 -0.58 0.44 16 9 C 0.51 13.28 7.77 -12.50 -0.10 13.19 16 10 O -0.58 -16.59 16.44 5.25 0.09 -16.50 16 11 N -0.55 -14.84 5.08 -11.94 -0.06 -14.90 16 12 C -0.30 -8.87 10.16 -15.00 -0.15 -9.02 16 13 H 0.12 4.05 7.38 -52.49 -0.39 3.66 16 14 C 0.05 1.30 5.50 -17.45 -0.10 1.20 16 15 N -0.87 -25.48 13.96 55.50 0.77 -24.71 16 16 Si 0.88 20.48 27.74 -169.99 -4.71 15.76 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.26 -5.88 6.52 56.52 0.37 -5.51 16 20 C -0.04 -0.80 10.79 -16.18 -0.17 -0.98 16 21 N -0.36 -5.61 2.93 -58.14 -0.17 -5.78 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 24 H 0.08 0.65 7.46 -51.93 -0.39 0.26 16 25 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 26 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 27 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.38 9.58 5.45 -40.82 -0.22 9.36 16 29 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.19 3.00 7.77 -52.49 -0.41 2.59 16 LS Contribution 269.98 15.07 4.07 4.07 Total: -1.00 -34.80 269.98 -6.50 -41.30 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -2.68 Total: 8.02 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -3.69 Total: 2.69 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.44 Total: -55.33 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.09 Total: -16.50 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.71 Total: 15.76 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.80 -6.50 -41.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.575 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds