Wall clock time and date at job start Sun Mar 29 2020 23:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34852 * 119.67974 * 2 1 4 4 C 1.40567 * 120.33825 * 179.97438 * 3 2 1 5 5 C 1.35899 * 119.73143 * 359.97438 * 4 3 2 6 6 C 1.41174 * 119.35092 * 359.97438 * 5 4 3 7 7 N 1.32252 * 132.03229 * 180.02562 * 6 5 4 8 8 C 1.34601 * 109.02664 * 179.97438 * 7 6 5 9 9 C 1.47480 * 125.92146 * 180.25934 * 8 7 6 10 10 O 1.21634 * 119.99556 * 179.69234 * 9 8 7 11 11 N 1.34775 * 120.00683 * 359.69211 * 9 8 7 12 12 C 1.36917 * 120.00241 * 180.02562 * 11 9 8 13 13 H 1.07992 * 119.99804 * 359.97438 * 12 11 9 14 14 C 1.39003 * 119.99797 * 180.02562 * 12 11 9 15 15 N 1.31396 * 120.00238 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00281 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47554 * 89.99576 * 16 14 12 18 18 H 1.48496 * 109.47191 * 209.99968 * 16 14 12 19 19 H 1.48502 * 109.46913 * 329.99999 * 16 14 12 20 20 C 1.36675 * 108.14467 * 359.97438 * 8 7 6 21 21 N 1.36203 * 107.08395 * 0.02562 * 20 8 7 22 22 H 1.08996 * 109.47485 * 270.00303 * 1 2 3 23 23 H 1.09001 * 109.47108 * 30.00250 * 1 2 3 24 24 H 1.09004 * 109.47214 * 150.00245 * 1 2 3 25 25 H 1.07998 * 119.83036 * 359.96809 * 3 2 1 26 26 H 1.08004 * 120.13073 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.32645 * 179.97438 * 5 4 3 28 28 H 0.97004 * 119.99861 * 359.97438 * 11 9 8 29 29 H 0.96993 * 120.00133 * 180.02562 * 15 14 12 30 30 H 1.07997 * 126.45452 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1748 1.1716 0.0000 4 6 3.5804 1.1878 0.0005 5 6 4.2678 0.0155 0.0016 6 6 3.5564 -1.2039 0.0027 7 7 3.9587 -2.4638 0.0043 8 6 2.8800 -3.2688 0.0053 9 6 2.9010 -4.7435 0.0126 10 8 1.8563 -5.3664 0.0185 11 7 4.0775 -5.4009 0.0126 12 6 4.0968 -6.7699 0.0189 13 1 3.1693 -7.3229 0.0241 14 6 5.3104 -7.4478 0.0195 15 7 5.3290 -8.7616 0.0259 16 14 6.9148 -6.4911 0.0111 17 1 7.3431 -6.2305 1.4089 18 1 7.9593 -7.2824 -0.6873 19 1 6.7173 -5.1996 -0.6949 20 6 1.7621 -2.4826 0.0049 21 7 2.1838 -1.1875 0.0031 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6268 2.1022 -0.0005 26 1 4.1117 2.1280 0.0001 27 1 5.3478 0.0167 0.0016 28 1 4.9107 -4.9041 0.0076 29 1 6.1758 -9.2346 0.0268 30 1 0.7375 -2.8239 0.0052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701297779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:31 Heat of formation + Delta-G solvation = 28.089398 kcal Electronic energy + Delta-G solvation = -16694.721875 eV Core-core repulsion = 13876.312528 eV Total energy + Delta-G solvation = -2818.409348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.88574 -40.25634 -38.32651 -36.17429 -35.14539 -33.88251 -32.29023 -30.41955 -28.15375 -27.58211 -24.66019 -23.66108 -22.45214 -21.26954 -20.37806 -19.00088 -17.63983 -17.53969 -17.20147 -16.84407 -16.07447 -15.54335 -15.52619 -15.22580 -14.84190 -14.64022 -14.26857 -14.20461 -13.54642 -13.20318 -13.10309 -12.51728 -12.44332 -12.32779 -12.06786 -12.01802 -11.65356 -11.40171 -10.83578 -10.37866 -9.86006 -8.84491 -8.54414 -6.11118 -0.30490 0.24161 1.04026 1.26808 1.34179 1.38959 1.46508 2.14014 2.32744 2.57358 2.74497 3.11719 3.14579 3.47978 3.70641 3.89281 4.15779 4.22636 4.33601 4.59819 4.65217 4.67454 4.75594 5.04875 5.15457 5.25886 5.32458 5.45763 5.62272 5.81691 6.03191 6.41312 6.63036 6.74719 7.24972 7.75905 8.61691 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036900 B = 0.005964 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.623981 B = 4693.848707 C = 5437.324246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.067 3.933 3 C -0.136 4.136 4 C -0.067 4.067 5 C -0.116 4.116 6 C 0.216 3.784 7 N -0.519 5.519 8 C 0.001 3.999 9 C 0.517 3.483 10 O -0.618 6.618 11 N -0.562 5.562 12 C -0.334 4.334 13 H 0.070 0.930 14 C 0.002 3.998 15 N -0.912 5.912 16 Si 0.952 3.048 17 H -0.254 1.254 18 H -0.258 1.258 19 H -0.250 1.250 20 C -0.032 4.032 21 N -0.363 5.363 22 H 0.094 0.906 23 H 0.123 0.877 24 H 0.065 0.935 25 H 0.197 0.803 26 H 0.188 0.812 27 H 0.163 0.837 28 H 0.391 0.609 29 H 0.286 0.714 30 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 27.854 -0.089 28.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.156 4.156 4 C -0.090 4.090 5 C -0.136 4.136 6 C -0.029 4.029 7 N -0.242 5.242 8 C -0.131 4.131 9 C 0.305 3.695 10 O -0.505 6.505 11 N -0.199 5.199 12 C -0.463 4.463 13 H 0.089 0.911 14 C -0.200 4.200 15 N -0.551 5.551 16 Si 0.772 3.228 17 H -0.178 1.178 18 H -0.182 1.182 19 H -0.174 1.174 20 C -0.168 4.168 21 N -0.035 5.035 22 H 0.113 0.887 23 H 0.142 0.858 24 H 0.084 0.916 25 H 0.214 0.786 26 H 0.205 0.795 27 H 0.180 0.820 28 H 0.227 0.773 29 H 0.095 0.905 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.379 26.851 -0.084 27.063 hybrid contribution 0.169 -0.505 0.002 0.532 sum -3.209 26.346 -0.083 26.541 Atomic orbital electron populations 1.21085 0.85660 1.05715 1.04941 1.21217 0.97077 0.82917 1.02293 1.21278 0.94928 0.97144 1.02207 1.21609 0.94054 0.98667 0.94713 1.20645 1.01616 0.86998 1.04355 1.21660 0.81132 0.94740 1.05393 1.70746 1.29545 0.99642 1.24273 1.20530 0.90664 0.93350 1.08561 1.17005 0.83826 0.85032 0.83651 1.90600 1.33013 1.68691 1.58148 1.41923 1.07433 1.06370 1.64133 1.19163 0.95748 0.80672 1.50674 0.91146 1.25972 1.02001 0.96591 0.95415 1.69738 1.29245 1.08071 1.48054 0.85532 0.77725 0.79158 0.80362 1.17806 1.18150 1.17441 1.22479 1.00759 0.80812 1.12741 1.42847 1.08687 1.05891 1.46095 0.88706 0.85824 0.91631 0.78554 0.79460 0.81958 0.77291 0.90459 0.77958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.84 71.24 0.70 -0.62 16 2 C 0.07 1.22 6.78 41.03 0.28 1.49 16 3 C -0.14 -1.52 9.58 22.06 0.21 -1.30 16 4 C -0.07 -0.82 10.06 22.29 0.22 -0.59 16 5 C -0.12 -2.49 10.11 22.45 0.23 -2.26 16 6 C 0.22 7.05 7.79 134.19 1.05 8.10 16 7 N -0.52 -21.83 11.01 -183.50 -2.02 -23.85 16 8 C 0.00 0.03 6.94 40.79 0.28 0.32 16 9 C 0.52 28.69 7.77 86.68 0.67 29.37 16 10 O -0.62 -37.96 16.44 -4.14 -0.07 -38.02 16 11 N -0.56 -31.85 5.08 -309.93 -1.58 -33.43 16 12 C -0.33 -21.15 10.16 84.08 0.85 -20.30 16 13 H 0.07 5.09 7.38 -2.91 -0.02 5.07 16 14 C 0.00 0.10 5.50 84.94 0.47 0.57 16 15 N -0.91 -56.06 13.96 21.67 0.30 -55.76 16 16 Si 0.95 43.17 27.74 68.60 1.90 45.07 16 17 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 20 C -0.03 -1.18 10.79 83.65 0.90 -0.28 16 21 N -0.36 -10.62 2.93 -337.86 -0.99 -11.61 16 22 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.12 0.53 8.07 -2.39 -0.02 0.51 16 24 H 0.06 0.93 7.46 -2.38 -0.02 0.91 16 25 H 0.20 0.34 8.06 -2.91 -0.02 0.31 16 26 H 0.19 0.61 8.06 -2.91 -0.02 0.58 16 27 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 28 H 0.39 20.36 5.45 -92.71 -0.51 19.86 16 29 H 0.29 15.86 8.31 -92.71 -0.77 15.09 16 30 H 0.20 6.54 7.77 -2.91 -0.02 6.52 16 Total: -1.00 -85.10 269.98 4.04 -81.06 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.62 Total: 22.04 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 5.87 Total: 14.50 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -4.28 Total: -124.64 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.07 Total: -38.02 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.90 Total: 45.07 kcal Total: -85.10 4.04 -81.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.151 kcal (2) G-P(sol) polarization free energy of solvation -85.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds