Wall clock time and date at job start Sun Mar 29 2020 22:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00362 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72452 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71947 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72207 * 3 2 1 7 7 C 1.38803 * 119.99820 * 179.72030 * 2 1 3 8 8 H 1.07999 * 120.00074 * 180.27552 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.27912 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47406 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00261 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00222 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99957 * 179.97438 * 13 11 10 15 15 H 1.08994 * 112.85442 * 23.80019 * 14 13 11 16 16 C 1.53779 * 113.61111 * 154.99992 * 14 13 11 17 17 C 1.53778 * 87.08019 * 139.97856 * 16 14 13 18 18 H 1.09003 * 113.61507 * 89.12005 * 17 16 14 19 19 C 1.53004 * 113.61600 * 219.93203 * 17 16 14 20 20 O 1.42895 * 109.47455 * 185.00323 * 19 17 16 21 21 C 1.53775 * 87.08272 * 334.56466 * 17 16 14 22 22 H 0.97001 * 120.00425 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 24 24 H 1.08996 * 109.47201 * 59.99195 * 10 9 7 25 25 H 0.96999 * 119.99516 * 359.97438 * 13 11 10 26 26 H 1.09008 * 113.61508 * 254.52357 * 16 14 13 27 27 H 1.09004 * 113.62012 * 25.43115 * 16 14 13 28 28 H 1.09002 * 109.46953 * 305.00408 * 19 17 16 29 29 H 1.08998 * 109.47095 * 64.99648 * 19 17 16 30 30 H 0.96700 * 114.00206 * 180.02562 * 20 19 17 31 31 H 1.09002 * 113.61435 * 270.88212 * 21 17 16 32 32 H 1.09000 * 113.61660 * 139.98061 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1091 1.6934 -1.2091 5 1 1.2854 2.7464 -0.0069 6 1 3.0990 1.6993 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0104 9 16 1.1292 -2.7280 0.0059 10 6 2.5157 -3.8915 0.0138 11 6 1.9872 -5.3027 0.0143 12 8 0.7909 -5.5024 0.0102 13 7 2.8439 -6.3432 0.0203 14 6 2.3301 -7.7152 0.0213 15 1 1.3227 -7.7902 -0.3881 16 6 3.3124 -8.7412 -0.5677 17 6 2.8709 -9.6923 0.5572 18 1 2.0110 -10.3089 0.2953 19 6 4.0200 -10.5015 1.1620 20 8 3.4983 -11.4340 2.1107 21 6 2.5054 -8.4375 1.3675 22 1 -0.4851 -0.8400 -0.0004 23 1 3.1277 -3.7334 -0.8743 24 1 3.1209 -3.7294 0.9056 25 1 3.8007 -6.1835 0.0239 26 1 3.0377 -9.0866 -1.5644 27 1 4.3567 -8.4366 -0.4971 28 1 4.5403 -11.0411 0.3706 29 1 4.7164 -9.8272 1.6603 30 1 4.1724 -11.9821 2.5351 31 1 3.3289 -8.0498 1.9672 32 1 1.5790 -8.5376 1.9332 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707528615.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:28 Heat of formation + Delta-G solvation = -111.000194 kcal Electronic energy + Delta-G solvation = -15012.662035 eV Core-core repulsion = 12291.372510 eV Total energy + Delta-G solvation = -2721.289525 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21580 -39.58122 -37.22286 -34.76295 -34.59201 -31.07876 -28.49123 -27.07181 -26.70791 -23.53243 -21.76880 -20.78260 -20.29093 -18.24871 -17.99131 -17.65414 -16.61983 -16.52324 -16.27960 -15.71026 -15.35399 -15.12523 -14.57219 -14.42137 -13.97670 -13.90480 -13.45122 -13.24827 -12.73228 -12.68978 -12.31127 -11.95040 -11.71621 -11.57028 -11.44275 -11.09760 -11.02013 -10.76946 -10.33138 -10.08613 -8.93073 -8.88033 -6.28459 1.20052 1.49148 1.52399 1.61115 1.81326 2.20068 2.35510 3.02055 3.13176 3.25034 3.46600 3.67409 3.80962 3.87112 4.03979 4.17408 4.36775 4.45609 4.46454 4.65757 4.71562 4.79814 4.81578 5.02247 5.07489 5.28082 5.56187 5.63602 6.14157 6.45285 6.94244 7.06022 7.17043 8.50485 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.068123 B = 0.003707 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.922922 B = 7550.842709 C = 7699.679384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.020 4.020 3 Si 1.138 2.862 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.614 4.614 8 H 0.076 0.924 9 S -0.200 6.200 10 C -0.109 4.109 11 C 0.532 3.468 12 O -0.569 6.569 13 N -0.699 5.699 14 C 0.109 3.891 15 H 0.088 0.912 16 C -0.115 4.115 17 C -0.105 4.105 18 H 0.090 0.910 19 C 0.088 3.912 20 O -0.599 6.599 21 C -0.145 4.145 22 H 0.260 0.740 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.418 0.582 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.397 0.603 31 H 0.095 0.905 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.175 -19.956 0.710 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.223 4.223 3 Si 0.955 3.045 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.762 4.762 8 H 0.095 0.905 9 S 0.027 5.973 10 C -0.261 4.261 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.351 5.351 14 C 0.004 3.996 15 H 0.106 0.894 16 C -0.153 4.153 17 C -0.124 4.124 18 H 0.108 0.892 19 C 0.010 3.990 20 O -0.408 6.408 21 C -0.184 4.184 22 H 0.071 0.929 23 H 0.132 0.868 24 H 0.130 0.870 25 H 0.256 0.744 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.247 0.753 31 H 0.114 0.886 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.449 -18.427 0.515 22.244 hybrid contribution 1.864 -1.496 0.258 2.404 sum 14.313 -19.922 0.773 24.543 Atomic orbital electron populations 1.70915 1.08066 1.30017 1.45911 1.27877 0.96309 1.06467 0.91658 0.82708 0.73918 0.69383 0.78482 1.18684 1.20599 1.18747 1.24045 0.96554 0.92745 1.62820 0.90542 1.85099 1.13410 1.01300 1.97489 1.23238 1.02093 0.93599 1.07151 1.20105 0.86397 0.86801 0.74940 1.90688 1.17576 1.86098 1.50374 1.45724 1.10082 1.04641 1.74693 1.22611 0.99379 0.79367 0.98262 0.89362 1.23286 1.00224 0.93135 0.98686 1.22289 0.99412 0.94292 0.96443 0.89186 1.22198 0.94317 0.91030 0.91406 1.86458 1.40225 1.54408 1.59669 1.23551 1.02112 0.96087 0.96668 0.92883 0.86813 0.86954 0.74380 0.89366 0.86795 0.91563 0.92238 0.75344 0.88620 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.60 13.67 21.65 0.30 -58.30 16 2 C -0.02 -1.18 5.49 84.86 0.47 -0.71 16 3 Si 1.14 49.26 29.92 68.60 2.05 51.31 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.61 -35.58 9.50 67.96 0.65 -34.93 16 8 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 9 S -0.20 -11.11 19.60 -56.49 -1.11 -12.22 16 10 C -0.11 -4.32 6.16 71.23 0.44 -3.88 16 11 C 0.53 19.63 7.85 87.65 0.69 20.32 16 12 O -0.57 -26.76 15.46 -3.03 -0.05 -26.80 16 13 N -0.70 -17.13 5.35 -440.04 -2.36 -19.48 16 14 C 0.11 2.43 4.24 45.52 0.19 2.62 16 15 H 0.09 2.50 7.46 -2.39 -0.02 2.49 16 16 C -0.12 -1.53 7.39 31.12 0.23 -1.30 16 17 C -0.11 -1.63 4.01 -10.27 -0.04 -1.67 16 18 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 19 C 0.09 1.02 6.89 71.98 0.50 1.52 16 20 O -0.60 -8.89 13.66 -148.98 -2.03 -10.93 16 21 C -0.15 -2.95 7.43 31.12 0.23 -2.72 16 22 H 0.26 17.38 7.13 -92.71 -0.66 16.72 16 23 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 24 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 25 H 0.42 6.95 8.73 -92.71 -0.81 6.14 16 26 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.11 0.96 8.08 -2.38 -0.02 0.95 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.55 7.85 -2.39 -0.02 0.53 16 30 H 0.40 2.10 9.12 -74.06 -0.68 1.42 16 31 H 0.10 1.72 7.90 -2.39 -0.02 1.70 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -81.46 290.85 -0.09 -81.55 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.24 Total: 15.64 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 3.35 Total: -20.76 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.06 Total: -77.79 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -2.08 Total: -37.73 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.31 kcal Atomic # 16 Polarization: -11.11 SS G_CDS: -1.11 Total: -12.22 kcal Total: -81.46 -0.09 -81.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707528615.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.453 kcal (2) G-P(sol) polarization free energy of solvation -81.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds