Wall clock time and date at job start Sun Mar 29 2020 22:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48502 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46991 * 299.99595 * 3 2 1 6 6 H 1.48501 * 109.46940 * 59.99841 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 H 1.09000 * 112.84625 * 45.33109 * 15 14 13 17 17 C 1.53780 * 113.61622 * 176.53015 * 15 14 13 18 18 C 1.53770 * 87.08165 * 139.98015 * 17 15 14 19 19 H 1.09004 * 113.61756 * 219.93148 * 18 17 15 20 20 O 1.42904 * 113.61689 * 89.11425 * 18 17 15 21 21 C 1.53777 * 113.61458 * 274.13836 * 15 14 13 22 22 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 24 24 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 25 25 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 26 26 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 27 27 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 28 28 H 1.09002 * 113.61183 * 254.53269 * 17 15 14 29 29 H 1.08998 * 113.61353 * 25.42767 * 17 15 14 30 30 H 0.96704 * 114.00373 * 179.97438 * 20 18 17 31 31 H 1.09002 * 113.61527 * 334.56570 * 21 15 14 32 32 H 1.09002 * 113.61599 * 105.46552 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 6 3.5025 -8.6985 0.0125 16 1 4.2805 -8.4261 0.7256 17 6 3.0703 -10.1714 0.1049 18 6 4.1818 -10.4796 -0.9120 19 1 3.8959 -11.2181 -1.6610 20 8 5.4467 -10.7614 -0.3097 21 6 4.0399 -9.0235 -1.3912 22 1 -0.4850 0.8401 -0.0004 23 1 3.1244 -3.7313 0.8906 24 1 3.1245 -3.7313 -0.8893 25 1 3.8009 -6.1835 0.0004 26 1 1.7216 -7.8708 0.8982 27 1 1.7219 -7.8795 -0.8818 28 1 3.2403 -10.6155 1.0857 29 1 2.0661 -10.3566 -0.2763 30 1 6.1499 -10.9564 -0.9443 31 1 3.3013 -8.8942 -2.1823 32 1 4.9916 -8.5422 -1.6166 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720902284.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:22 Heat of formation + Delta-G solvation = -102.302824 kcal Electronic energy + Delta-G solvation = -14940.810854 eV Core-core repulsion = 12219.898475 eV Total energy + Delta-G solvation = -2720.912379 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92154 -39.99284 -36.44130 -34.86246 -34.58367 -31.34048 -28.28559 -27.57464 -26.65376 -23.51027 -21.85562 -20.54380 -19.81064 -18.16100 -17.69224 -17.26281 -16.88332 -16.74111 -16.15083 -15.83575 -15.53792 -14.71350 -14.62973 -14.49097 -13.86679 -13.48522 -13.32474 -13.16365 -12.92568 -12.85880 -12.60988 -12.13500 -11.80472 -11.70350 -11.16092 -11.13674 -11.00431 -10.58054 -10.27919 -10.09637 -8.67398 -8.35047 -6.13393 1.27156 1.41755 1.47362 1.58772 1.60729 2.26087 2.30893 2.99148 3.20483 3.31318 3.60912 3.66276 3.79355 4.00066 4.03156 4.28246 4.33367 4.50274 4.54878 4.69463 4.81480 4.87657 4.91449 5.09026 5.21343 5.37181 5.41892 5.52299 6.19839 6.50641 6.92276 7.06269 7.24049 8.74493 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.061194 B = 0.003676 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.450414 B = 7614.606214 C = 7948.797839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.711 5.711 14 C 0.130 3.870 15 C -0.112 4.112 16 H 0.098 0.902 17 C -0.127 4.127 18 C 0.082 3.918 19 H 0.087 0.913 20 O -0.571 6.571 21 C -0.163 4.163 22 H 0.271 0.729 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.415 0.585 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.398 0.602 31 H 0.093 0.907 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.075 -19.617 -2.734 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.365 5.365 14 C 0.006 3.994 15 C -0.130 4.130 16 H 0.116 0.884 17 C -0.165 4.165 18 C 0.023 3.977 19 H 0.105 0.895 20 O -0.380 6.380 21 C -0.200 4.200 22 H 0.080 0.920 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.252 0.748 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.249 0.751 31 H 0.111 0.889 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.618 -19.790 -2.196 22.566 hybrid contribution 2.047 1.305 -0.398 2.460 sum 12.665 -18.484 -2.594 22.557 Atomic orbital electron populations 1.70196 1.07994 1.28568 1.48042 1.26150 0.95989 1.03374 0.93710 0.84880 0.78583 0.76218 0.78090 1.18019 1.19866 1.19935 1.23243 0.95362 0.91977 1.58832 0.89900 1.85577 1.10648 0.99299 1.97052 1.23374 1.03524 0.94381 1.06783 1.20099 0.86256 0.86765 0.75172 1.90686 1.17444 1.86165 1.50366 1.45771 1.10223 1.05224 1.75270 1.21448 0.96680 0.79710 1.01538 1.22689 0.96783 0.94240 0.99326 0.88380 1.23084 0.98737 0.94081 1.00612 1.22709 0.84584 0.95188 0.95219 0.89537 1.86422 1.20324 1.92336 1.38878 1.23751 1.02423 0.97657 0.96193 0.91975 0.87296 0.87158 0.74829 0.92673 0.91944 0.90816 0.87475 0.75143 0.88864 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 10 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 11 C 0.53 20.05 7.85 87.66 0.69 20.74 16 12 O -0.57 -26.92 15.86 -3.04 -0.05 -26.96 16 13 N -0.71 -18.47 5.56 -463.05 -2.57 -21.04 16 14 C 0.13 2.95 5.50 86.38 0.47 3.42 16 15 C -0.11 -1.80 3.68 -10.27 -0.04 -1.83 16 16 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 17 C -0.13 -1.79 7.47 31.12 0.23 -1.56 16 18 C 0.08 0.98 5.28 31.18 0.16 1.14 16 19 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 20 O -0.57 -7.53 13.59 -148.98 -2.02 -9.56 16 21 C -0.16 -2.11 7.47 31.18 0.23 -1.87 16 22 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 23 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 24 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 25 H 0.42 8.03 8.47 -92.71 -0.79 7.24 16 26 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.06 1.51 7.87 -2.39 -0.02 1.49 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.30 8.10 -2.39 -0.02 1.28 16 30 H 0.40 1.78 9.12 -74.05 -0.68 1.11 16 31 H 0.09 1.21 7.92 -2.39 -0.02 1.19 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.89 292.67 -0.51 -78.40 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -0.33 Total: 13.54 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 3.31 Total: -14.36 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.29 Total: -77.08 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -2.07 Total: -36.52 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -77.89 -0.51 -78.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720902284.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.902 kcal (2) G-P(sol) polarization free energy of solvation -77.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds