Wall clock time and date at job start Sun Mar 29 2020 22:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47133 * 2 1 4 4 C 1.50704 * 109.46859 * 240.00434 * 2 1 3 5 5 O 1.21209 * 120.00024 * 240.00060 * 4 2 1 6 6 O 1.34315 * 120.00107 * 60.00099 * 4 2 1 7 7 C 1.34918 * 116.99755 * 180.02562 * 6 4 2 8 8 H 1.08002 * 120.00404 * 359.97438 * 7 6 4 9 9 C 1.38756 * 120.00031 * 179.97438 * 7 6 4 10 10 N 1.31444 * 119.99844 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00377 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46993 * 89.99706 * 11 9 7 13 13 H 1.48496 * 109.46973 * 210.00206 * 11 9 7 14 14 H 1.48503 * 109.47016 * 330.00169 * 11 9 7 15 15 N 1.46897 * 109.47138 * 120.00401 * 2 1 3 16 16 C 1.46463 * 111.00051 * 287.33645 * 15 2 1 17 17 C 1.53251 * 109.86350 * 197.76556 * 16 15 2 18 18 S 1.81901 * 108.50313 * 297.99800 * 17 16 15 19 19 C 1.81907 * 101.91476 * 51.30502 * 18 17 16 20 20 C 1.46477 * 110.99950 * 53.31636 * 15 2 1 21 21 H 1.09006 * 109.47423 * 54.26477 * 1 2 3 22 22 H 1.09004 * 109.47157 * 174.26335 * 1 2 3 23 23 H 1.08996 * 109.47133 * 294.25922 * 1 2 3 24 24 H 0.96994 * 120.00287 * 179.97438 * 10 9 7 25 25 H 1.09002 * 109.40603 * 77.64552 * 16 15 2 26 26 H 1.08996 * 109.40543 * 317.88845 * 16 15 2 27 27 H 1.08993 * 109.63602 * 178.29462 * 17 16 15 28 28 H 1.08995 * 109.62716 * 57.69819 * 17 16 15 29 29 H 1.08996 * 109.62975 * 68.39744 * 19 18 17 30 30 H 1.08996 * 109.63041 * 188.99009 * 19 18 17 31 31 H 1.08995 * 109.40432 * 282.35237 * 20 15 2 32 32 H 1.09005 * 109.40166 * 42.11671 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7291 -1.6959 -1.1195 6 8 1.7078 -0.2514 -2.4504 7 6 2.1897 -0.9339 -3.5098 8 1 2.8068 -1.8066 -3.3546 9 6 1.8926 -0.5146 -4.7987 10 7 1.1412 0.5472 -4.9876 11 14 2.5604 -1.4591 -6.2655 12 1 1.5945 -2.5181 -6.6537 13 1 2.7588 -0.5279 -7.4051 14 1 3.8589 -2.0821 -5.9035 15 7 2.0197 -0.6926 1.1994 16 6 1.8105 0.1224 2.3982 17 6 2.6973 -0.3908 3.5379 18 16 2.2096 -2.1001 3.9240 19 6 2.2497 -2.8821 2.2820 20 6 1.4244 -2.0259 1.3154 21 1 -0.3634 0.6002 -0.8342 22 1 -0.3634 -1.0226 -0.1027 23 1 -0.3633 0.4222 0.9369 24 1 0.9338 0.8406 -5.8885 25 1 0.7643 0.0630 2.6985 26 1 2.0651 1.1595 2.1801 27 1 2.5612 0.2366 4.4187 28 1 3.7418 -0.3693 3.2272 29 1 3.2796 -2.9423 1.9302 30 1 1.8212 -3.8825 2.3423 31 1 0.4052 -1.9360 1.6909 32 1 1.4073 -2.5014 0.3346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759809323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:42 Heat of formation + Delta-G solvation = -69.896086 kcal Electronic energy + Delta-G solvation = -16314.810817 eV Core-core repulsion = 13595.303700 eV Total energy + Delta-G solvation = -2719.507117 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.62494 -37.82329 -34.97878 -32.44795 -31.97126 -31.46485 -27.90580 -25.68537 -23.93546 -23.54539 -21.09070 -19.45688 -17.71638 -16.67393 -16.55178 -15.77338 -15.22015 -14.66116 -14.42607 -14.15029 -14.02239 -13.61932 -13.31641 -12.90509 -12.59679 -12.31462 -12.06077 -11.80749 -11.64194 -11.45229 -11.19692 -10.92722 -10.73267 -10.44053 -10.27298 -9.81036 -9.67463 -8.91706 -8.58021 -8.19031 -7.65498 -6.41929 -4.09623 1.84835 2.56502 3.10290 3.17721 3.23634 3.52094 3.60639 4.05466 4.56827 4.81715 4.97711 5.08686 5.18671 5.22251 5.31108 5.41155 5.47544 5.49674 5.61172 5.76040 5.85161 6.00084 6.06559 6.14436 6.37615 6.61646 7.13872 7.21522 7.40001 7.94882 8.72287 9.07433 9.86260 10.76150 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048746 B = 0.005556 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.272158 B = 5037.948651 C = 5352.227925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.106 3.894 3 H 0.107 0.893 4 C 0.403 3.597 5 O -0.539 6.539 6 O -0.215 6.215 7 C -0.381 4.381 8 H 0.095 0.905 9 C 0.042 3.958 10 N -0.866 5.866 11 Si 0.942 3.058 12 H -0.274 1.274 13 H -0.278 1.278 14 H -0.267 1.267 15 N -0.531 5.531 16 C 0.056 3.944 17 C -0.070 4.070 18 S -0.292 6.292 19 C -0.063 4.063 20 C 0.056 3.944 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.269 0.731 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 -0.513 12.839 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.003 4.003 3 H 0.125 0.875 4 C 0.248 3.752 5 O -0.435 6.435 6 O -0.122 6.122 7 C -0.457 4.457 8 H 0.112 0.888 9 C -0.162 4.162 10 N -0.504 5.504 11 Si 0.767 3.233 12 H -0.199 1.199 13 H -0.203 1.203 14 H -0.191 1.191 15 N -0.256 5.256 16 C -0.073 4.073 17 C -0.218 4.218 18 S -0.067 6.067 19 C -0.212 4.212 20 C -0.073 4.073 21 H 0.099 0.901 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.650 -1.165 13.618 13.684 hybrid contribution -0.166 0.224 -1.772 1.793 sum -0.816 -0.942 11.847 11.912 Atomic orbital electron populations 1.22344 0.95036 1.03265 1.02860 1.20967 0.94201 0.98000 0.87143 0.87490 1.22848 0.81731 0.84948 0.85638 1.90533 1.38392 1.27380 1.87156 1.83866 1.63732 1.51938 1.12640 1.21194 1.31692 1.10951 0.81856 0.88767 1.25309 0.96411 0.96527 0.97905 1.69985 1.34881 1.22922 1.22582 0.85695 0.79383 0.78753 0.79504 1.19934 1.20348 1.19124 1.60832 1.60587 1.02758 1.01419 1.22205 0.98095 0.97528 0.89446 1.23461 1.03276 0.94167 1.00928 1.86698 1.91269 1.11474 1.17218 1.23489 1.05104 1.00410 0.92177 1.22281 0.94717 0.89087 1.01207 0.90066 0.92094 0.92262 0.92128 0.93245 0.89595 0.87721 0.88972 0.88664 0.87845 0.93870 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 8.37 37.16 0.31 -2.45 16 2 C 0.11 1.89 2.81 -68.86 -0.19 1.70 16 3 H 0.11 1.77 7.77 -51.93 -0.40 1.37 16 4 C 0.40 9.66 6.74 36.01 0.24 9.90 16 5 O -0.54 -13.99 13.80 -19.05 -0.26 -14.26 16 6 O -0.21 -6.00 9.67 -20.71 -0.20 -6.20 16 7 C -0.38 -11.10 9.65 30.92 0.30 -10.80 16 8 H 0.09 2.78 6.86 -52.49 -0.36 2.42 16 9 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 10 N -0.87 -25.09 13.67 55.48 0.76 -24.33 16 11 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 15 N -0.53 -8.48 4.06 -228.44 -0.93 -9.41 16 16 C 0.06 0.70 4.89 -3.93 -0.02 0.68 16 17 C -0.07 -0.81 6.69 37.29 0.25 -0.56 16 18 S -0.29 -3.86 22.40 -107.50 -2.41 -6.27 16 19 C -0.06 -0.89 6.69 37.29 0.25 -0.64 16 20 C 0.06 0.88 3.76 -3.93 -0.01 0.86 16 21 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 22 H 0.06 0.98 7.06 -51.93 -0.37 0.62 16 23 H 0.06 0.76 6.99 -51.93 -0.36 0.39 16 24 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.05 0.59 7.16 -51.93 -0.37 0.22 16 26 H 0.09 0.94 7.72 -51.93 -0.40 0.54 16 27 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.04 0.63 7.22 -51.93 -0.37 0.25 16 32 H 0.10 1.92 5.87 -51.93 -0.30 1.62 16 LS Contribution 275.20 15.07 4.15 4.15 Total: -1.00 -31.72 275.20 -7.08 -38.80 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.19 Total: 1.59 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 1.03 Total: -0.23 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: -0.17 Total: -33.74 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.46 Total: -20.46 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.41 Total: -6.27 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.72 -7.08 -38.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759809323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.094 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds