Wall clock time and date at job start Sun Mar 29 2020 23:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36694 * 120.00117 * 2 1 4 4 H 1.07995 * 119.99957 * 138.58473 * 3 2 1 5 5 C 1.39126 * 119.99846 * 318.30802 * 3 2 1 6 6 N 1.31309 * 119.99769 * 158.84506 * 5 3 2 7 7 Si 1.86799 * 119.99888 * 338.84671 * 5 3 2 8 8 H 1.48507 * 109.47139 * 78.51708 * 7 5 3 9 9 H 1.48504 * 109.47092 * 198.51588 * 7 5 3 10 10 H 1.48497 * 109.47370 * 318.51641 * 7 5 3 11 11 C 1.34777 * 119.99866 * 179.97438 * 2 1 3 12 12 O 1.21732 * 119.99675 * 185.92903 * 11 2 1 13 13 C 1.46813 * 120.00244 * 5.92394 * 11 2 1 14 14 C 1.37806 * 119.94464 * 27.45955 * 13 11 2 15 15 C 1.39823 * 119.99963 * 179.70362 * 14 13 11 16 16 C 1.36299 * 119.93381 * 0.60698 * 15 14 13 17 17 C 1.40880 * 119.81995 * 359.68063 * 16 15 14 18 18 N 1.32601 * 132.18195 * 180.02562 * 17 16 15 19 19 C 1.33239 * 109.14597 * 179.97438 * 18 17 16 20 20 C 1.35456 * 108.58434 * 359.97438 * 19 18 17 21 21 N 1.36292 * 107.17049 * 0.02562 * 20 19 18 22 22 H 1.08997 * 109.46865 * 332.07876 * 1 2 3 23 23 H 1.08997 * 109.46922 * 92.07778 * 1 2 3 24 24 H 1.08995 * 109.46830 * 212.07918 * 1 2 3 25 25 H 0.97008 * 120.00090 * 180.02562 * 6 5 3 26 26 H 1.08001 * 119.99950 * 0.02562 * 14 13 11 27 27 H 1.08006 * 120.03396 * 180.29034 * 15 14 13 28 28 H 1.07997 * 120.09298 * 179.66488 * 16 15 14 29 29 H 1.08000 * 125.71292 * 180.02562 * 19 18 17 30 30 H 1.08003 * 126.41241 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1838 0.0000 4 1 3.0259 1.3007 0.6187 5 6 1.7171 2.2361 -0.8014 6 7 2.0794 3.4665 -0.5204 7 14 0.6227 1.8984 -2.2770 8 1 -0.7735 1.6831 -1.8189 9 1 0.6666 3.0594 -3.2019 10 1 1.1047 0.6844 -2.9834 11 6 2.1389 -1.1672 0.0005 12 8 3.3513 -1.1699 0.1094 13 6 1.4107 -2.4353 -0.1301 14 6 0.2036 -2.4702 -0.7940 15 6 -0.4879 -3.6784 -0.9245 16 6 0.0272 -4.8187 -0.3838 17 6 1.2587 -4.7760 0.2990 18 7 1.9730 -5.7136 0.9064 19 6 3.0791 -5.1648 1.4069 20 6 3.0758 -3.8424 1.1134 21 7 1.9329 -3.5880 0.4158 22 1 -0.3633 0.9080 0.4812 23 1 -0.3633 -0.0373 -1.0270 24 1 -0.3633 -0.8707 0.5458 25 1 1.7783 4.2003 -1.0790 26 1 -0.2059 -1.5652 -1.2179 27 1 -1.4318 -3.7072 -1.4487 28 1 -0.5074 -5.7523 -0.4784 29 1 3.8499 -5.6870 1.9542 30 1 3.8363 -3.1242 1.3820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770415622.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:19 Heat of formation + Delta-G solvation = 66.320207 kcal Electronic energy + Delta-G solvation = -17475.659033 eV Core-core repulsion = 14658.907497 eV Total energy + Delta-G solvation = -2816.751536 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.84015 -40.87051 -38.07315 -37.03695 -34.51529 -34.34535 -31.54329 -29.94518 -28.38398 -27.38641 -25.05729 -23.62430 -23.14941 -21.16472 -19.33180 -18.68303 -18.33600 -17.84140 -17.12368 -16.92351 -16.65233 -15.88652 -15.76230 -15.06750 -14.74709 -14.63371 -14.40286 -14.17652 -13.79159 -13.19389 -12.97323 -12.72908 -12.63648 -12.31240 -12.02359 -11.96180 -11.35271 -11.07208 -10.74519 -9.89105 -9.86647 -8.87749 -8.62869 -6.33012 -0.64796 0.29227 1.17663 1.27494 1.39761 1.44663 1.61905 2.02946 2.13775 2.45646 2.52324 2.82328 3.25175 3.46524 3.63040 3.83599 4.07063 4.22750 4.32991 4.41961 4.44146 4.59196 4.77446 4.93111 5.03147 5.10538 5.35001 5.49491 5.61353 5.89641 5.95172 6.36288 6.71033 6.75787 7.02972 7.54792 8.53032 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036431 B = 0.007823 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.385730 B = 3578.123598 C = 4163.221004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.449 5.449 3 C -0.349 4.349 4 H 0.044 0.956 5 C 0.025 3.975 6 N -0.896 5.896 7 Si 0.937 3.063 8 H -0.207 1.207 9 H -0.282 1.282 10 H -0.266 1.266 11 C 0.486 3.514 12 O -0.607 6.607 13 C 0.019 3.981 14 C -0.100 4.100 15 C -0.090 4.090 16 C -0.062 4.062 17 C 0.189 3.811 18 N -0.514 5.514 19 C 0.029 3.971 20 C -0.105 4.105 21 N -0.346 5.346 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.286 0.714 26 H 0.183 0.817 27 H 0.205 0.795 28 H 0.188 0.812 29 H 0.212 0.788 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.213 -12.632 -2.936 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.169 5.169 3 C -0.477 4.477 4 H 0.062 0.938 5 C -0.180 4.180 6 N -0.531 5.531 7 Si 0.757 3.243 8 H -0.129 1.129 9 H -0.207 1.207 10 H -0.191 1.191 11 C 0.276 3.724 12 O -0.493 6.493 13 C -0.088 4.088 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.083 4.083 17 C -0.053 4.053 18 N -0.235 5.235 19 C -0.123 4.123 20 C -0.239 4.239 21 N -0.017 5.017 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.117 0.883 25 H 0.096 0.904 26 H 0.200 0.800 27 H 0.222 0.778 28 H 0.205 0.795 29 H 0.229 0.771 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.794 -13.147 -2.797 17.882 hybrid contribution 1.160 1.522 -0.217 1.926 sum -10.634 -11.626 -3.014 16.041 Atomic orbital electron populations 1.22879 0.79321 1.05121 1.02252 1.43426 1.06509 1.03614 1.63323 1.18573 1.13444 0.88476 1.27173 0.93846 1.26303 0.98687 0.93516 0.99540 1.69795 1.44923 0.99973 1.38396 0.86083 0.81330 0.78648 0.78240 1.12898 1.20738 1.19085 1.18309 0.86987 0.84095 0.82993 1.90668 1.15757 1.87467 1.55378 1.20447 0.97376 0.85786 1.05143 1.22466 0.90462 1.02994 0.96190 1.21538 1.01986 0.88929 0.98862 1.20951 0.89923 1.02365 0.95014 1.21835 0.98165 0.80435 1.04856 1.70631 1.06684 1.29288 1.16847 1.22972 0.97386 0.90273 1.01680 1.23003 0.93178 1.00197 1.07499 1.42777 1.16657 1.08184 1.34106 0.89931 0.90581 0.88252 0.90363 0.80048 0.77802 0.79461 0.77138 0.81578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.49 6.62 127.77 0.85 2.34 16 2 N -0.45 -21.09 2.49 -663.36 -1.65 -22.73 16 3 C -0.35 -19.89 9.23 84.15 0.78 -19.12 16 4 H 0.04 2.95 7.93 -2.91 -0.02 2.93 16 5 C 0.02 1.32 5.28 84.98 0.45 1.77 16 6 N -0.90 -50.65 13.95 21.69 0.30 -50.35 16 7 Si 0.94 37.01 25.40 68.60 1.74 38.75 16 8 H -0.21 -6.31 6.40 99.48 0.64 -5.68 16 9 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 11 C 0.49 23.48 7.32 86.49 0.63 24.12 16 12 O -0.61 -35.00 15.17 -4.45 -0.07 -35.07 16 13 C 0.02 0.71 6.30 40.34 0.25 0.97 16 14 C -0.10 -2.59 7.64 22.55 0.17 -2.42 16 15 C -0.09 -1.58 10.04 22.20 0.22 -1.36 16 16 C -0.06 -1.34 10.09 22.46 0.23 -1.12 16 17 C 0.19 6.10 7.80 134.07 1.05 7.15 16 18 N -0.51 -17.36 11.31 -194.28 -2.20 -19.55 16 19 C 0.03 0.93 11.83 83.84 0.99 1.93 16 20 C -0.11 -4.04 10.85 83.36 0.90 -3.14 16 21 N -0.35 -13.12 2.97 -339.78 -1.01 -14.12 16 22 H 0.08 2.74 7.83 -2.39 -0.02 2.72 16 23 H 0.08 2.08 3.72 -2.39 -0.01 2.07 16 24 H 0.10 2.62 6.00 -2.39 -0.01 2.61 16 25 H 0.29 14.68 8.31 -92.70 -0.77 13.91 16 26 H 0.18 4.03 4.45 -2.91 -0.01 4.02 16 27 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 28 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.21 5.02 8.06 -2.91 -0.02 5.00 16 30 H 0.17 6.87 7.09 -2.91 -0.02 6.85 16 Total: -1.00 -78.77 254.41 4.76 -74.02 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.11 Total: 17.95 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.52 Total: 11.11 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.55 Total: -106.76 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.07 Total: -35.07 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 1.74 Total: 38.75 kcal Total: -78.77 4.76 -74.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770415622.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.338 kcal (2) G-P(sol) polarization free energy of solvation -78.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds