Wall clock time and date at job start Sun Mar 29 2020 22:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 111.00144 * 2 1 4 4 C 1.50691 * 109.46842 * 66.04508 * 3 2 1 5 5 O 1.21209 * 120.00332 * 0.02562 * 4 3 2 6 6 O 1.34319 * 119.99719 * 180.02562 * 4 3 2 7 7 C 1.34924 * 117.00110 * 180.02562 * 6 4 3 8 8 H 1.08004 * 119.99738 * 359.97438 * 7 6 4 9 9 C 1.38754 * 120.00007 * 179.97438 * 7 6 4 10 10 N 1.31436 * 120.00124 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99920 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46944 * 89.99930 * 11 9 7 13 13 H 1.48502 * 109.47215 * 210.00108 * 11 9 7 14 14 H 1.48504 * 109.47120 * 330.00055 * 11 9 7 15 15 C 1.46899 * 111.00154 * 236.04391 * 2 1 3 16 16 H 1.09008 * 108.70949 * 62.41502 * 15 2 1 17 17 C 1.52333 * 108.86913 * 303.95740 * 15 2 1 18 18 C 1.54260 * 112.47388 * 239.24811 * 17 15 2 19 19 S 1.83763 * 102.67096 * 335.32779 * 18 17 15 20 20 C 1.54259 * 108.87132 * 180.87582 * 15 2 1 21 21 H 1.09001 * 109.46989 * 183.95759 * 1 2 3 22 22 H 1.08995 * 109.47233 * 303.95416 * 1 2 3 23 23 H 1.08999 * 109.47333 * 63.95563 * 1 2 3 24 24 H 1.09000 * 109.46949 * 186.04444 * 3 2 1 25 25 H 1.09004 * 109.46564 * 306.04378 * 3 2 1 26 26 H 0.97001 * 120.00106 * 180.02562 * 10 9 7 27 27 H 1.09002 * 108.86808 * 359.97438 * 17 15 2 28 28 H 1.09004 * 108.87242 * 118.50311 * 17 15 2 29 29 H 1.09007 * 110.78707 * 93.67041 * 18 17 15 30 30 H 1.09001 * 110.79108 * 217.12161 * 18 17 15 31 31 H 1.08996 * 110.78994 * 263.62238 * 20 15 2 32 32 H 1.08998 * 110.78338 * 27.08133 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0058 1.4457 2.1405 6 8 2.0167 3.3158 1.5225 7 6 1.6639 3.8611 2.7051 8 1 1.1009 3.2804 3.4209 9 6 2.0244 5.1677 3.0017 10 7 2.7100 5.8741 2.1309 11 14 1.5353 5.9228 4.6388 12 1 2.6002 5.6642 5.6410 13 1 1.3555 7.3877 4.4742 14 1 0.2614 5.3167 5.1026 15 6 1.9955 -0.7660 -1.1375 16 1 1.6744 -0.2850 -2.0616 17 6 1.4203 -2.1758 -1.0906 18 6 2.5164 -3.2568 -0.9923 19 16 3.9776 -2.4171 -1.7248 20 6 3.5368 -0.7525 -1.0776 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5739 0.8524 23 1 -0.3634 0.4512 -0.9233 24 1 3.0798 1.3444 -0.1082 25 1 1.5611 1.9273 -0.8310 26 1 2.9624 6.7875 2.3384 27 1 0.7639 -2.2600 -0.2245 28 1 0.8353 -2.3482 -1.9940 29 1 2.7043 -3.5238 0.0478 30 1 2.2454 -4.1368 -1.5756 31 1 3.9421 0.0311 -1.7176 32 1 3.8829 -0.6326 -0.0510 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772043965.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:29 Heat of formation + Delta-G solvation = -63.007101 kcal Electronic energy + Delta-G solvation = -15924.087300 eV Core-core repulsion = 13204.878912 eV Total energy + Delta-G solvation = -2719.208388 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40295 -38.07577 -35.18969 -33.34332 -32.13849 -29.78013 -28.39591 -25.34677 -24.98075 -23.52271 -20.15140 -19.53100 -17.73466 -17.20258 -16.42049 -16.21195 -15.09699 -14.99143 -14.66009 -14.32131 -14.12020 -13.55238 -13.41311 -13.03113 -12.27550 -12.16440 -11.87546 -11.76816 -11.61539 -11.50449 -11.20751 -11.09510 -11.01480 -10.43674 -10.25973 -9.98422 -9.81357 -8.96641 -8.57262 -8.18090 -7.81614 -6.40663 -4.08562 1.78593 2.18000 3.11554 3.18594 3.24535 3.53183 3.64692 4.09123 4.33067 4.70537 4.73003 4.79206 5.02184 5.10647 5.12034 5.38854 5.44147 5.53018 5.59565 5.66484 5.71699 5.81096 5.82255 5.86910 6.37651 6.59564 7.09257 7.17856 7.41060 7.96276 8.74140 9.08525 9.87154 10.77537 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048006 B = 0.004818 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.122412 B = 5810.293902 C = 6093.140178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.520 5.520 3 C 0.069 3.931 4 C 0.400 3.600 5 O -0.539 6.539 6 O -0.218 6.218 7 C -0.380 4.380 8 H 0.095 0.905 9 C 0.042 3.958 10 N -0.867 5.867 11 Si 0.943 3.057 12 H -0.273 1.273 13 H -0.278 1.278 14 H -0.267 1.267 15 C 0.084 3.916 16 H 0.054 0.946 17 C -0.125 4.125 18 C -0.060 4.060 19 S -0.305 6.305 20 C -0.061 4.061 21 H 0.068 0.932 22 H 0.095 0.905 23 H 0.020 0.980 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.269 0.731 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -12.761 -7.777 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.060 4.060 4 C 0.245 3.755 5 O -0.435 6.435 6 O -0.125 6.125 7 C -0.457 4.457 8 H 0.113 0.887 9 C -0.162 4.162 10 N -0.504 5.504 11 Si 0.767 3.233 12 H -0.199 1.199 13 H -0.204 1.204 14 H -0.191 1.191 15 C -0.026 4.026 16 H 0.072 0.928 17 C -0.163 4.163 18 C -0.208 4.208 19 S -0.079 6.079 20 C -0.209 4.209 21 H 0.087 0.913 22 H 0.114 0.886 23 H 0.038 0.962 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.435 -13.312 -7.828 15.450 hybrid contribution -1.329 1.238 0.669 1.935 sum -1.764 -12.075 -7.160 14.148 Atomic orbital electron populations 1.22672 0.86333 1.02516 1.01804 1.61815 1.08972 1.12559 1.41211 1.21396 1.01929 0.88074 0.94627 1.22876 0.81123 0.82538 0.88938 1.90520 1.40566 1.65537 1.46858 1.83866 1.66139 1.24206 1.38333 1.21197 1.36045 0.96425 0.92011 0.88713 1.25319 0.96158 0.95265 0.99467 1.69988 1.35735 1.09966 1.34738 0.85684 0.79265 0.78059 0.80243 1.19883 1.20373 1.19139 1.22227 0.92825 0.94642 0.92902 0.92840 1.22132 0.98528 0.91590 1.04098 1.24070 0.93062 0.99993 1.03693 1.87901 1.38599 1.09530 1.71862 1.24358 0.96416 0.94952 1.05198 0.91311 0.88629 0.96155 0.87846 0.91821 0.92118 0.88805 0.90641 0.88963 0.87971 0.87624 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.81 60.06 0.53 0.74 16 2 N -0.52 -8.10 4.26 -235.95 -1.00 -9.11 16 3 C 0.07 1.22 5.34 -4.98 -0.03 1.19 16 4 C 0.40 9.65 7.60 36.00 0.27 9.93 16 5 O -0.54 -14.06 13.57 -19.05 -0.26 -14.32 16 6 O -0.22 -6.19 9.75 -20.74 -0.20 -6.39 16 7 C -0.38 -11.20 9.65 30.92 0.30 -10.90 16 8 H 0.10 2.81 6.86 -52.48 -0.36 2.45 16 9 C 0.04 1.17 5.49 -17.53 -0.10 1.08 16 10 N -0.87 -25.37 13.67 55.48 0.76 -24.61 16 11 Si 0.94 21.29 29.55 -169.99 -5.02 16.26 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 C 0.08 1.03 2.45 -67.40 -0.16 0.87 16 16 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 17 C -0.12 -1.28 5.46 -26.41 -0.14 -1.42 16 18 C -0.06 -0.59 7.44 37.82 0.28 -0.31 16 19 S -0.30 -3.71 23.26 -107.50 -2.50 -6.21 16 20 C -0.06 -0.75 5.48 37.82 0.21 -0.54 16 21 H 0.07 0.86 6.00 -51.93 -0.31 0.54 16 22 H 0.10 1.76 5.83 -51.93 -0.30 1.45 16 23 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.10 1.68 6.38 -51.93 -0.33 1.34 16 25 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 26 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.09 1.01 5.84 -51.93 -0.30 0.70 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.11 1.44 7.71 -51.93 -0.40 1.04 16 LS Contribution 276.94 15.07 4.17 4.17 Total: -1.00 -32.38 276.94 -7.00 -39.38 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.10 Total: 0.20 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 1.16 Total: 0.62 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: -0.25 Total: -33.71 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.46 Total: -20.71 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.50 Total: -6.21 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.38 -7.00 -39.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772043965.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.625 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds