Wall clock time and date at job start Sun Mar 29 2020 22:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 111.00144 * 2 1 4 4 C 1.50691 * 109.46842 * 66.04508 * 3 2 1 5 5 O 1.21209 * 120.00332 * 0.02562 * 4 3 2 6 6 O 1.34319 * 119.99719 * 180.02562 * 4 3 2 7 7 C 1.34924 * 117.00110 * 180.02562 * 6 4 3 8 8 H 1.08004 * 119.99738 * 359.97438 * 7 6 4 9 9 C 1.38754 * 120.00007 * 179.97438 * 7 6 4 10 10 N 1.31436 * 120.00124 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99920 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46944 * 89.99930 * 11 9 7 13 13 H 1.48502 * 109.47215 * 210.00108 * 11 9 7 14 14 H 1.48504 * 109.47120 * 330.00055 * 11 9 7 15 15 C 1.46899 * 111.00154 * 236.04391 * 2 1 3 16 16 H 1.09008 * 108.70949 * 62.41502 * 15 2 1 17 17 C 1.52333 * 108.86913 * 303.95740 * 15 2 1 18 18 C 1.54260 * 112.47388 * 239.24811 * 17 15 2 19 19 S 1.83763 * 102.67096 * 335.32779 * 18 17 15 20 20 C 1.54259 * 108.87132 * 180.87582 * 15 2 1 21 21 H 1.09001 * 109.46989 * 183.95759 * 1 2 3 22 22 H 1.08995 * 109.47233 * 303.95416 * 1 2 3 23 23 H 1.08999 * 109.47333 * 63.95563 * 1 2 3 24 24 H 1.09000 * 109.46949 * 186.04444 * 3 2 1 25 25 H 1.09004 * 109.46564 * 306.04378 * 3 2 1 26 26 H 0.97001 * 120.00106 * 180.02562 * 10 9 7 27 27 H 1.09002 * 108.86808 * 359.97438 * 17 15 2 28 28 H 1.09004 * 108.87242 * 118.50311 * 17 15 2 29 29 H 1.09007 * 110.78707 * 93.67041 * 18 17 15 30 30 H 1.09001 * 110.79108 * 217.12161 * 18 17 15 31 31 H 1.08996 * 110.78994 * 263.62238 * 20 15 2 32 32 H 1.08998 * 110.78338 * 27.08133 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0058 1.4457 2.1405 6 8 2.0167 3.3158 1.5225 7 6 1.6639 3.8611 2.7051 8 1 1.1009 3.2804 3.4209 9 6 2.0244 5.1677 3.0017 10 7 2.7100 5.8741 2.1309 11 14 1.5353 5.9228 4.6388 12 1 2.6002 5.6642 5.6410 13 1 1.3555 7.3877 4.4742 14 1 0.2614 5.3167 5.1026 15 6 1.9955 -0.7660 -1.1375 16 1 1.6744 -0.2850 -2.0616 17 6 1.4203 -2.1758 -1.0906 18 6 2.5164 -3.2568 -0.9923 19 16 3.9776 -2.4171 -1.7248 20 6 3.5368 -0.7525 -1.0776 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5739 0.8524 23 1 -0.3634 0.4512 -0.9233 24 1 3.0798 1.3444 -0.1082 25 1 1.5611 1.9273 -0.8310 26 1 2.9624 6.7875 2.3384 27 1 0.7639 -2.2600 -0.2245 28 1 0.8353 -2.3482 -1.9940 29 1 2.7043 -3.5238 0.0478 30 1 2.2454 -4.1368 -1.5756 31 1 3.9421 0.0311 -1.7176 32 1 3.8829 -0.6326 -0.0510 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772043965.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:29 Heat of formation + Delta-G solvation = -84.609676 kcal Electronic energy + Delta-G solvation = -15925.024058 eV Core-core repulsion = 13204.878912 eV Total energy + Delta-G solvation = -2720.145146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17023 -39.46777 -37.13261 -34.49017 -34.28072 -30.78620 -29.81771 -27.32140 -26.02355 -24.79858 -21.83728 -20.64450 -19.84593 -18.68746 -17.78042 -17.39858 -16.69692 -16.54738 -16.26474 -15.99798 -15.31023 -14.89322 -14.57444 -14.14623 -13.92392 -13.61662 -13.48438 -13.08309 -12.78039 -12.76362 -12.54834 -12.26650 -12.19432 -12.11247 -12.00168 -11.91924 -11.00887 -10.79968 -10.67908 -9.40488 -8.76479 -8.53016 -6.32498 0.87486 1.29594 1.32492 1.34488 1.51425 1.66771 2.05724 2.47961 2.98098 3.08613 3.45842 3.86556 3.92626 4.07001 4.18422 4.22779 4.27138 4.47487 4.54641 4.58561 4.70190 4.72793 4.81730 4.88404 4.99723 5.14144 5.22796 5.80935 5.84716 6.02528 6.71857 6.92793 7.80342 8.67833 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048006 B = 0.004818 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.122412 B = 5810.293902 C = 6093.140178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.533 5.533 3 C 0.080 3.920 4 C 0.398 3.602 5 O -0.562 6.562 6 O -0.250 6.250 7 C -0.418 4.418 8 H 0.081 0.919 9 C -0.004 4.004 10 N -0.904 5.904 11 Si 1.016 2.984 12 H -0.261 1.261 13 H -0.261 1.261 14 H -0.264 1.264 15 C 0.087 3.913 16 H 0.067 0.933 17 C -0.122 4.122 18 C -0.050 4.050 19 S -0.331 6.331 20 C -0.060 4.060 21 H 0.095 0.905 22 H 0.054 0.946 23 H 0.037 0.963 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.278 0.722 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -13.545 -8.293 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.260 5.260 3 C -0.048 4.048 4 C 0.244 3.756 5 O -0.458 6.458 6 O -0.158 6.158 7 C -0.494 4.494 8 H 0.098 0.902 9 C -0.204 4.204 10 N -0.542 5.542 11 Si 0.835 3.165 12 H -0.186 1.186 13 H -0.185 1.185 14 H -0.188 1.188 15 C -0.023 4.023 16 H 0.085 0.915 17 C -0.161 4.161 18 C -0.198 4.198 19 S -0.106 6.106 20 C -0.209 4.209 21 H 0.113 0.887 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.138 0.862 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.891 -14.126 -8.368 16.442 hybrid contribution -1.193 1.342 0.769 1.954 sum -2.083 -12.783 -7.598 15.016 Atomic orbital electron populations 1.22604 0.85988 1.03660 1.00780 1.61789 1.09451 1.11218 1.43511 1.21401 1.03105 0.89162 0.91169 1.24179 0.79378 0.81337 0.90664 1.90496 1.41209 1.65694 1.48379 1.83888 1.67378 1.26332 1.38228 1.21367 1.37716 0.97508 0.92769 0.90164 1.26492 0.95386 0.94975 1.03559 1.70069 1.36497 1.10702 1.36946 0.84647 0.79136 0.77684 0.75038 1.18599 1.18467 1.18808 1.22371 0.92540 0.95404 0.91938 0.91481 1.22132 0.98551 0.90242 1.05134 1.24168 0.91334 1.00440 1.03842 1.88023 1.40580 1.09939 1.72017 1.24317 0.96634 0.95501 1.04400 0.88668 0.92681 0.94484 0.86233 0.90024 0.91271 0.89049 0.88338 0.89136 0.85545 0.86713 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 8.81 127.69 1.13 1.61 16 2 N -0.53 -15.89 4.26 -900.40 -3.83 -19.72 16 3 C 0.08 2.81 5.34 85.55 0.46 3.27 16 4 C 0.40 19.64 7.60 71.23 0.54 20.18 16 5 O -0.56 -30.17 13.57 20.78 0.28 -29.88 16 6 O -0.25 -14.63 9.75 14.75 0.14 -14.48 16 7 C -0.42 -25.36 9.65 67.94 0.66 -24.70 16 8 H 0.08 4.95 6.86 -2.91 -0.02 4.93 16 9 C 0.00 -0.24 5.49 84.88 0.47 0.23 16 10 N -0.90 -53.48 13.67 21.62 0.30 -53.19 16 11 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 12 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 13 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 15 C 0.09 1.92 2.45 45.12 0.11 2.03 16 16 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 17 C -0.12 -2.12 5.46 30.80 0.17 -1.95 16 18 C -0.05 -0.85 7.44 72.41 0.54 -0.31 16 19 S -0.33 -7.47 23.26 -56.49 -1.31 -8.78 16 20 C -0.06 -1.39 5.48 72.41 0.40 -0.99 16 21 H 0.09 2.16 6.00 -2.39 -0.01 2.14 16 22 H 0.05 2.03 5.83 -2.39 -0.01 2.02 16 23 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 24 H 0.12 3.79 6.38 -2.39 -0.02 3.77 16 25 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 26 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.09 1.68 5.84 -2.39 -0.01 1.67 16 28 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.11 2.39 8.08 -2.39 -0.02 2.38 16 32 H 0.09 2.35 7.71 -2.39 -0.02 2.34 16 Total: -1.00 -71.66 276.94 3.18 -68.48 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.12 Total: 12.64 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 4.46 Total: -0.64 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -3.54 Total: -72.91 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: 0.43 Total: -44.37 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.31 Total: -8.78 kcal Total: -71.66 3.18 -68.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772043965.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.131 kcal (2) G-P(sol) polarization free energy of solvation -71.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds