Wall clock time and date at job start Sun Mar 29 2020 22:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86792 * 120.00023 * 2 1 4 4 H 1.48501 * 109.47217 * 270.00110 * 3 2 1 5 5 H 1.48504 * 109.47173 * 29.99831 * 3 2 1 6 6 H 1.48502 * 109.47283 * 149.99795 * 3 2 1 7 7 C 1.38654 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00272 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99707 * 180.02562 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 C 1.35308 * 125.86936 * 124.71683 * 15 14 13 17 17 C 1.35352 * 106.17598 * 179.90426 * 16 15 14 18 18 N 1.33772 * 106.49466 * 0.35284 * 17 16 15 19 19 N 1.28635 * 108.88758 * 359.77030 * 18 17 16 20 20 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 21 21 C 1.38094 * 120.07047 * 359.77109 * 20 13 12 22 22 H 0.96992 * 119.99813 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 24 24 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 25 25 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 26 26 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 27 27 H 1.08004 * 126.91350 * 0.02562 * 16 15 14 28 28 H 1.08002 * 126.75581 * 180.11743 * 17 16 15 29 29 H 1.08006 * 119.96428 * 179.74746 * 20 13 12 30 30 H 1.08005 * 120.03539 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0011 10 6 3.9735 -2.4057 -0.1051 11 6 3.2235 -3.5745 -0.0921 12 6 3.8539 -4.7990 -0.1941 13 6 5.2298 -4.8615 -0.3200 14 6 5.9141 -6.1991 -0.4368 15 7 6.2536 -6.6924 0.9002 16 6 5.8876 -7.8862 1.4214 17 6 6.4134 -7.9307 2.6678 18 7 7.0601 -6.7737 2.8487 19 7 6.9467 -6.0623 1.7830 20 6 5.9794 -3.6994 -0.3337 21 6 5.3554 -2.4722 -0.2263 22 1 -0.4849 0.8400 0.0004 23 1 2.1487 -3.5261 0.0020 24 1 3.2716 -5.7083 -0.1795 25 1 5.2459 -6.9075 -0.9266 26 1 6.8245 -6.0913 -1.0263 27 1 5.2966 -8.6508 0.9391 28 1 6.3247 -8.7393 3.3782 29 1 7.0541 -3.7517 -0.4280 30 1 5.9414 -1.5650 -0.2367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774746367.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:53 Heat of formation + Delta-G solvation = 100.758787 kcal Electronic energy + Delta-G solvation = -16477.825439 eV Core-core repulsion = 13662.567273 eV Total energy + Delta-G solvation = -2815.258167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.07100 -39.36241 -37.18289 -34.44874 -32.51116 -30.92149 -30.48785 -30.22752 -26.63895 -25.00734 -22.71443 -22.15766 -21.89675 -20.50863 -18.05755 -17.65588 -17.28482 -16.31416 -15.17665 -14.91851 -14.62823 -14.22726 -14.17886 -13.88441 -13.70382 -13.06164 -12.80557 -12.33423 -12.13632 -11.55713 -11.53094 -11.30302 -10.91002 -10.85826 -10.74841 -10.25624 -9.95963 -9.52566 -9.28394 -8.99180 -8.42022 -7.56142 -6.53657 -4.20526 1.65555 1.84059 2.00444 2.70739 2.75084 3.16122 3.19523 3.34296 4.14653 4.33251 4.42330 4.66464 4.72043 4.90720 4.98752 5.07681 5.18754 5.29557 5.41150 5.60351 5.81021 5.97652 6.14927 6.23387 6.38882 6.61336 6.68774 6.85021 7.01623 7.11139 7.44245 7.66136 7.90042 8.66922 8.80580 9.40468 10.53261 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043622 B = 0.004803 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.717472 B = 5828.625767 C = 5938.511148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.393 4.393 8 H 0.108 0.892 9 O -0.209 6.209 10 C 0.172 3.828 11 C -0.226 4.226 12 C -0.048 4.048 13 C -0.219 4.219 14 C 0.171 3.829 15 N -0.279 5.279 16 C -0.059 4.059 17 C -0.059 4.059 18 N -0.284 5.284 19 N -0.072 5.072 20 C -0.037 4.037 21 C -0.195 4.195 22 H 0.282 0.718 23 H 0.136 0.864 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.186 0.814 28 H 0.184 0.816 29 H 0.118 0.882 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.035 -13.138 -2.043 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.125 0.875 9 O -0.113 6.113 10 C 0.119 3.881 11 C -0.245 4.245 12 C -0.067 4.067 13 C -0.220 4.220 14 C 0.052 3.948 15 N -0.073 5.073 16 C -0.210 4.210 17 C -0.217 4.217 18 N -0.150 5.150 19 N -0.052 5.052 20 C -0.056 4.056 21 C -0.214 4.214 22 H 0.092 0.908 23 H 0.153 0.847 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.203 0.797 28 H 0.202 0.798 29 H 0.135 0.865 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.672 -11.455 -1.726 15.091 hybrid contribution -0.734 -0.430 -0.328 0.912 sum 8.938 -11.885 -2.054 15.012 Atomic orbital electron populations 1.69641 1.05629 1.28785 1.46944 1.24499 0.95061 0.98998 0.95315 0.86168 0.80413 0.81203 0.79102 1.19711 1.20586 1.18231 1.20801 0.76707 0.96780 1.52500 0.87476 1.83579 1.22838 1.25839 1.79009 1.19205 0.91776 0.85473 0.91676 1.21226 1.01262 0.91681 1.10344 1.20618 0.93105 0.96972 0.96041 1.19023 0.93762 0.92615 1.16641 1.20845 1.01114 0.95301 0.77518 1.47964 1.33321 1.11652 1.14400 1.23671 1.07766 0.92237 0.97352 1.23565 1.02434 0.98925 0.96788 1.75123 1.19716 1.03525 1.16590 1.78325 1.12452 1.20155 0.94292 1.20486 0.98433 0.91050 0.95606 1.20212 0.91926 0.98005 1.11287 0.90823 0.84682 0.87275 0.87637 0.88235 0.79684 0.79848 0.86452 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.66 13.96 55.48 0.77 -23.88 16 2 C 0.07 1.80 5.49 -17.51 -0.10 1.71 16 3 Si 0.91 21.23 28.62 -169.99 -4.86 16.36 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.39 -10.81 9.95 30.89 0.31 -10.50 16 8 H 0.11 3.00 5.44 -52.49 -0.29 2.71 16 9 O -0.21 -5.40 8.59 0.04 0.00 -5.40 16 10 C 0.17 3.87 6.65 -39.11 -0.26 3.61 16 11 C -0.23 -4.68 9.17 -39.40 -0.36 -5.04 16 12 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 13 C -0.22 -3.33 5.25 -104.57 -0.55 -3.88 16 14 C 0.17 1.90 6.58 -5.19 -0.03 1.86 16 15 N -0.28 -3.69 3.43 -62.44 -0.21 -3.90 16 16 C -0.06 -0.63 11.57 -17.05 -0.20 -0.83 16 17 C -0.06 -0.72 12.05 -17.74 -0.21 -0.94 16 18 N -0.28 -4.65 12.41 30.24 0.38 -4.28 16 19 N -0.07 -1.20 12.92 60.35 0.78 -0.42 16 20 C -0.04 -0.60 9.69 -39.61 -0.38 -0.99 16 21 C -0.19 -3.77 9.99 -39.40 -0.39 -4.16 16 22 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.14 2.94 5.64 -52.49 -0.30 2.65 16 24 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 25 H 0.11 0.83 8.01 -51.93 -0.42 0.41 16 26 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 27 H 0.19 1.16 8.06 -52.48 -0.42 0.73 16 28 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 273.11 15.07 4.12 4.12 Total: -1.00 -31.75 273.11 -4.27 -36.02 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -2.67 Total: 1.72 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.57 Total: -20.35 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 1.72 Total: -32.48 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: 0.00 Total: -5.40 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.75 -4.27 -36.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774746367.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.777 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds