Wall clock time and date at job start Sun Mar 29 2020 22:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86792 * 120.00023 * 2 1 4 4 H 1.48501 * 109.47217 * 270.00110 * 3 2 1 5 5 H 1.48504 * 109.47173 * 29.99831 * 3 2 1 6 6 H 1.48502 * 109.47283 * 149.99795 * 3 2 1 7 7 C 1.38654 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00272 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99707 * 180.02562 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 C 1.35308 * 125.86936 * 124.71683 * 15 14 13 17 17 C 1.35352 * 106.17598 * 179.90426 * 16 15 14 18 18 N 1.33772 * 106.49466 * 0.35284 * 17 16 15 19 19 N 1.28635 * 108.88758 * 359.77030 * 18 17 16 20 20 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 21 21 C 1.38094 * 120.07047 * 359.77109 * 20 13 12 22 22 H 0.96992 * 119.99813 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 24 24 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 25 25 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 26 26 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 27 27 H 1.08004 * 126.91350 * 0.02562 * 16 15 14 28 28 H 1.08002 * 126.75581 * 180.11743 * 17 16 15 29 29 H 1.08006 * 119.96428 * 179.74746 * 20 13 12 30 30 H 1.08005 * 120.03539 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0011 10 6 3.9735 -2.4057 -0.1051 11 6 3.2235 -3.5745 -0.0921 12 6 3.8539 -4.7990 -0.1941 13 6 5.2298 -4.8615 -0.3200 14 6 5.9141 -6.1991 -0.4368 15 7 6.2536 -6.6924 0.9002 16 6 5.8876 -7.8862 1.4214 17 6 6.4134 -7.9307 2.6678 18 7 7.0601 -6.7737 2.8487 19 7 6.9467 -6.0623 1.7830 20 6 5.9794 -3.6994 -0.3337 21 6 5.3554 -2.4722 -0.2263 22 1 -0.4849 0.8400 0.0004 23 1 2.1487 -3.5261 0.0020 24 1 3.2716 -5.7083 -0.1795 25 1 5.2459 -6.9075 -0.9266 26 1 6.8245 -6.0913 -1.0263 27 1 5.2966 -8.6508 0.9391 28 1 6.3247 -8.7393 3.3782 29 1 7.0541 -3.7517 -0.4280 30 1 5.9414 -1.5650 -0.2367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774746367.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:53 Heat of formation + Delta-G solvation = 79.140097 kcal Electronic energy + Delta-G solvation = -16478.762896 eV Core-core repulsion = 13662.567273 eV Total energy + Delta-G solvation = -2816.195623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.04006 -40.97708 -38.73142 -35.59737 -34.47318 -31.97882 -31.85452 -31.55509 -28.10362 -26.66560 -23.95606 -23.36841 -23.11830 -21.80233 -19.91233 -19.22693 -18.38124 -17.43740 -16.69724 -16.29464 -15.82560 -15.69743 -15.66703 -15.20949 -15.03777 -14.47515 -14.38144 -14.13925 -13.39509 -13.13517 -12.77814 -12.58874 -12.51648 -12.42102 -12.00557 -11.77546 -11.36451 -10.99178 -10.94800 -10.20963 -9.88823 -9.18475 -8.55120 -6.28378 0.34915 0.50235 0.84446 1.29284 1.32149 1.49221 1.74764 1.76599 2.24408 2.73318 2.99745 3.08660 3.55227 3.80498 3.88264 4.04383 4.16973 4.38026 4.40681 4.44308 4.50983 4.65653 4.85603 4.95650 5.15642 5.26522 5.36778 5.48483 5.59919 5.72305 5.79867 5.83787 6.13924 6.78848 7.51106 7.67258 8.56100 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043622 B = 0.004803 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.717472 B = 5828.625767 C = 5938.511148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.403 4.403 8 H 0.084 0.916 9 O -0.242 6.242 10 C 0.131 3.869 11 C -0.244 4.244 12 C -0.047 4.047 13 C -0.189 4.189 14 C 0.168 3.832 15 N -0.283 5.283 16 C -0.037 4.037 17 C -0.073 4.073 18 N -0.325 5.325 19 N -0.123 5.123 20 C -0.036 4.036 21 C -0.200 4.200 22 H 0.286 0.714 23 H 0.111 0.889 24 H 0.146 0.854 25 H 0.153 0.847 26 H 0.125 0.875 27 H 0.237 0.763 28 H 0.214 0.786 29 H 0.149 0.851 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.995 -16.032 -2.869 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.479 4.479 8 H 0.102 0.898 9 O -0.149 6.149 10 C 0.081 3.919 11 C -0.263 4.263 12 C -0.065 4.065 13 C -0.190 4.190 14 C 0.050 3.950 15 N -0.077 5.077 16 C -0.188 4.188 17 C -0.231 4.231 18 N -0.190 5.190 19 N -0.102 5.102 20 C -0.054 4.054 21 C -0.219 4.219 22 H 0.096 0.904 23 H 0.129 0.871 24 H 0.164 0.836 25 H 0.170 0.830 26 H 0.143 0.857 27 H 0.254 0.746 28 H 0.231 0.769 29 H 0.167 0.833 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.675 -14.375 -2.556 18.694 hybrid contribution -1.116 0.012 -0.082 1.119 sum 10.559 -14.362 -2.638 18.020 Atomic orbital electron populations 1.69717 1.06842 1.29739 1.49597 1.25266 0.95875 1.02115 0.95318 0.85246 0.78717 0.77510 0.79443 1.18735 1.19095 1.19057 1.20732 0.77923 0.96273 1.52963 0.89847 1.83527 1.21481 1.27558 1.82352 1.19770 0.93207 0.85262 0.93625 1.21286 1.00393 0.93165 1.11484 1.21004 0.94286 0.96587 0.94641 1.19564 0.93168 0.94820 1.11475 1.21177 1.03000 0.93588 0.77241 1.48017 1.32887 1.12390 1.14414 1.24471 1.06033 0.91794 0.96533 1.24239 1.01947 0.98524 0.98394 1.75056 1.21283 1.05386 1.17311 1.78281 1.14976 1.21638 0.95343 1.20949 1.00152 0.90287 0.94034 1.20516 0.90694 0.99896 1.10830 0.90428 0.87075 0.83596 0.82961 0.85654 0.74646 0.76935 0.83297 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.40 13.96 21.61 0.30 -54.10 16 2 C 0.01 0.77 5.49 84.83 0.47 1.24 16 3 Si 0.97 45.35 28.62 68.60 1.96 47.31 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.40 -23.60 9.95 67.92 0.68 -22.93 16 8 H 0.08 5.08 5.44 -2.91 -0.02 5.06 16 9 O -0.24 -13.18 8.59 -22.77 -0.20 -13.37 16 10 C 0.13 6.09 6.65 22.58 0.15 6.24 16 11 C -0.24 -10.31 9.17 22.39 0.21 -10.11 16 12 C -0.05 -1.45 9.69 22.25 0.22 -1.23 16 13 C -0.19 -4.99 5.25 -19.83 -0.10 -5.10 16 14 C 0.17 2.71 6.58 85.63 0.56 3.27 16 15 N -0.28 -6.12 3.43 -351.46 -1.21 -7.32 16 16 C -0.04 -0.58 11.57 83.49 0.97 0.38 16 17 C -0.07 -1.51 12.05 83.73 1.01 -0.50 16 18 N -0.33 -10.00 12.41 -58.25 -0.72 -10.73 16 19 N -0.12 -3.77 12.92 37.02 0.48 -3.29 16 20 C -0.04 -1.07 9.69 22.25 0.22 -0.86 16 21 C -0.20 -7.65 9.99 22.39 0.22 -7.43 16 22 H 0.29 15.51 8.31 -92.71 -0.77 14.74 16 23 H 0.11 5.18 5.64 -2.91 -0.02 5.17 16 24 H 0.15 3.42 8.06 -2.92 -0.02 3.40 16 25 H 0.15 1.15 8.01 -2.38 -0.02 1.13 16 26 H 0.13 1.50 8.08 -2.39 -0.02 1.48 16 27 H 0.24 1.10 8.06 -2.91 -0.02 1.08 16 28 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -75.86 273.11 6.37 -69.49 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.16 Total: 9.02 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 4.59 Total: -37.01 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -1.15 Total: -75.44 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.20 Total: -13.37 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.96 Total: 47.31 kcal Total: -75.86 6.37 -69.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774746367.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.633 kcal (2) G-P(sol) polarization free energy of solvation -75.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds