Wall clock time and date at job start Sun Mar 29 2020 22:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00204 * 3 2 1 5 5 H 1.48500 * 109.47007 * 29.99965 * 3 2 1 6 6 H 1.48499 * 109.47411 * 149.99617 * 3 2 1 7 7 C 1.37882 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99880 * 180.02562 * 10 9 7 12 12 O 1.21794 * 119.99795 * 0.26874 * 11 10 9 13 13 C 1.41695 * 120.00066 * 179.97438 * 11 10 9 14 14 C 1.39180 * 125.87455 * 179.68743 * 13 11 10 15 15 C 1.38087 * 107.68051 * 179.87108 * 14 13 11 16 16 C 1.39509 * 107.56360 * 0.39182 * 15 14 13 17 17 C 1.40618 * 132.41518 * 179.80438 * 16 15 14 18 18 C 1.36293 * 119.16088 * 180.02562 * 17 16 15 19 19 C 1.39963 * 120.04056 * 359.95813 * 18 17 16 20 20 N 1.30647 * 120.99097 * 0.02562 * 19 18 17 21 21 N 1.37154 * 108.20608 * 359.75586 * 16 15 14 22 22 H 0.97001 * 120.00657 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47258 * 59.99883 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 25 25 H 0.96999 * 120.00076 * 359.97438 * 10 9 7 26 26 H 1.08003 * 126.16488 * 0.02562 * 14 13 11 27 27 H 1.07996 * 126.21804 * 180.14137 * 15 14 13 28 28 H 1.08002 * 120.41542 * 0.02562 * 17 16 15 29 29 H 1.08005 * 119.97545 * 179.97438 * 18 17 16 30 30 H 1.08000 * 119.50470 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5565 -5.1059 -0.0065 13 6 2.6747 -5.9604 -0.0016 14 6 2.3475 -7.3132 0.0040 15 6 3.5277 -8.0301 -0.0017 16 6 4.5781 -7.1119 -0.0018 17 6 5.9754 -7.2693 -0.0027 18 6 6.7685 -6.1609 -0.0019 19 6 6.1910 -4.8860 -0.0010 20 7 4.8932 -4.7354 -0.0004 21 7 4.0432 -5.8490 -0.0016 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 3.1568 -3.4354 -0.0009 26 1 1.3502 -7.7277 0.0091 27 1 3.6207 -9.1060 -0.0017 28 1 6.4145 -8.2560 -0.0041 29 1 7.8434 -6.2665 -0.0022 30 1 6.8276 -4.0136 -0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787620870.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:09 Heat of formation + Delta-G solvation = 69.327440 kcal Electronic energy + Delta-G solvation = -16738.202593 eV Core-core repulsion = 13921.581461 eV Total energy + Delta-G solvation = -2816.621132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.92017 -38.66312 -37.07704 -34.18397 -33.40337 -32.18727 -30.41634 -29.13192 -27.01776 -24.74391 -23.42746 -22.31188 -20.80125 -20.04004 -18.34159 -17.26430 -16.25319 -16.01094 -15.74320 -15.29250 -15.02498 -14.24997 -14.03791 -13.65449 -13.54006 -12.99324 -12.48414 -12.27506 -12.18297 -11.90761 -11.63950 -10.94075 -10.89130 -10.82419 -10.59609 -10.27973 -9.34278 -9.24266 -8.88428 -8.68130 -7.94590 -7.59593 -6.11349 -4.17429 0.37081 1.03358 1.92539 2.43247 3.17555 3.27088 3.32522 3.35598 4.04255 4.13981 4.24820 4.37494 4.46590 4.51607 4.79157 5.18725 5.24459 5.31155 5.51002 5.59556 5.68554 5.97376 6.09168 6.16418 6.62374 6.80132 7.36180 7.49578 7.58111 7.58968 7.77272 8.02714 8.71808 8.82519 9.15498 9.48322 10.99132 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.006160 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.917865 B = 4544.330861 C = 5520.102081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.247 3.753 10 N -0.703 5.703 11 C 0.563 3.437 12 O -0.552 6.552 13 C -0.003 4.003 14 C -0.090 4.090 15 C -0.172 4.172 16 C -0.011 4.011 17 C -0.009 4.009 18 C -0.207 4.207 19 C 0.135 3.865 20 N -0.269 5.269 21 N -0.236 5.236 22 H 0.265 0.735 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.400 0.600 26 H 0.165 0.835 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.516 -14.409 0.014 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.127 3.873 10 N -0.352 5.352 11 C 0.349 3.651 12 O -0.432 6.432 13 C -0.121 4.121 14 C -0.115 4.115 15 C -0.198 4.198 16 C -0.122 4.122 17 C -0.036 4.036 18 C -0.230 4.230 19 C -0.057 4.057 20 N -0.078 5.078 21 N 0.000 5.000 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.236 0.764 26 H 0.183 0.817 27 H 0.172 0.828 28 H 0.170 0.830 29 H 0.166 0.834 30 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 13.873 -13.297 0.018 19.217 hybrid contribution 1.566 0.412 -0.008 1.620 sum 15.439 -12.885 0.010 20.110 Atomic orbital electron populations 1.69974 1.06072 1.27221 1.49100 1.24945 0.94913 0.99368 0.94778 0.86413 0.79630 0.82660 0.78191 1.20464 1.20984 1.19777 1.21226 0.93279 0.90409 1.52938 0.91963 1.19153 0.88359 0.81960 0.97871 1.46653 1.12179 1.05877 1.70531 1.15863 0.87386 0.82699 0.79153 1.90825 1.14804 1.84850 1.52738 1.20054 0.77882 0.97013 1.17108 1.21335 0.99546 0.89477 1.01143 1.21014 0.90073 0.98578 1.10123 1.19390 0.94230 0.85758 1.12810 1.20888 0.89831 1.00588 0.92269 1.21387 1.01945 0.92126 1.07552 1.24036 0.90495 0.99524 0.91638 1.75624 1.04690 1.08515 1.18950 1.45838 1.05823 1.03191 1.45151 0.92484 0.95295 0.95309 0.76411 0.81742 0.82821 0.82989 0.83410 0.78736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.54 9.28 -34.44 -0.32 -15.86 16 8 H 0.06 1.70 7.60 -52.48 -0.40 1.30 16 9 C 0.25 7.08 5.43 -5.19 -0.03 7.05 16 10 N -0.70 -17.32 5.54 -64.38 -0.36 -17.68 16 11 C 0.56 13.28 7.60 -14.94 -0.11 13.17 16 12 O -0.55 -14.55 16.79 5.10 0.09 -14.46 16 13 C 0.00 -0.06 6.84 -83.75 -0.57 -0.63 16 14 C -0.09 -1.41 10.49 -39.29 -0.41 -1.82 16 15 C -0.17 -2.14 10.92 -39.16 -0.43 -2.57 16 16 C -0.01 -0.15 6.80 -84.11 -0.57 -0.72 16 17 C -0.01 -0.08 10.11 -39.38 -0.40 -0.48 16 18 C -0.21 -1.67 10.04 -39.64 -0.40 -2.06 16 19 C 0.14 1.41 11.29 -17.41 -0.20 1.21 16 20 N -0.27 -4.21 9.68 30.61 0.30 -3.91 16 21 N -0.24 -3.97 4.01 -8.28 -0.03 -4.00 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.40 9.11 5.91 -40.82 -0.24 8.87 16 26 H 0.17 2.33 8.06 -52.48 -0.42 1.91 16 27 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.15 0.63 8.06 -52.48 -0.42 0.20 16 30 H 0.20 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 272.81 15.07 4.11 4.11 Total: -1.00 -35.91 272.81 -6.45 -42.37 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.73 Total: 4.26 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.54 Total: -0.99 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.64 Total: -51.72 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -35.91 -6.45 -42.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787620870.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.693 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds