Wall clock time and date at job start Sun Mar 29 2020 23:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99840 * 2 1 4 4 H 1.48507 * 109.46884 * 240.00268 * 3 2 1 5 5 H 1.48500 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47137 * 120.00225 * 3 2 1 7 7 C 1.37875 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99911 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99720 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.34769 * 120.00303 * 179.97438 * 10 9 7 12 12 O 1.21653 * 119.99903 * 5.09157 * 11 10 9 13 13 C 1.47055 * 119.99908 * 185.08827 * 11 10 9 14 14 C 1.37593 * 119.93175 * 354.70928 * 13 11 10 15 15 C 1.39951 * 120.01165 * 179.73096 * 14 13 11 16 16 C 1.36205 * 119.91921 * 0.54529 * 15 14 13 17 17 C 1.40918 * 119.80256 * 359.72593 * 16 15 14 18 18 N 1.32572 * 132.19400 * 180.02562 * 17 16 15 19 19 C 1.33237 * 109.14680 * 179.97438 * 18 17 16 20 20 C 1.35453 * 108.57073 * 359.97438 * 19 18 17 21 21 N 1.36248 * 107.18098 * 0.02562 * 20 19 18 22 22 H 0.97003 * 120.00035 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46982 * 60.00462 * 9 7 2 24 24 H 1.09000 * 109.47851 * 300.00548 * 9 7 2 25 25 H 0.97000 * 119.99420 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.99676 * 359.97438 * 14 13 11 27 27 H 1.07996 * 120.03490 * 180.29961 * 15 14 13 28 28 H 1.08004 * 120.09846 * 179.71153 * 16 15 14 29 29 H 1.07996 * 125.71609 * 180.02562 * 19 18 17 30 30 H 1.08006 * 126.40660 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4990 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8832 -0.0015 12 8 0.5616 -5.1069 -0.0937 13 6 2.7049 -5.9993 0.1102 14 6 4.0582 -5.7512 0.1046 15 6 4.9647 -6.8116 0.2165 16 6 4.5057 -8.0898 0.3197 17 6 3.1185 -8.3380 0.3191 18 7 2.4143 -9.4579 0.4052 19 6 1.1160 -9.1623 0.3594 20 6 0.9832 -7.8195 0.2415 21 7 2.2390 -7.2916 0.2151 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6246 -2.5570 0.8896 25 1 3.1567 -3.4353 -0.0021 26 1 4.4210 -4.7377 0.0178 27 1 6.0270 -6.6168 0.2170 28 1 5.2028 -8.9107 0.4015 29 1 0.3052 -9.8740 0.4088 30 1 0.0553 -7.2700 0.1800 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787621605.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:03 Heat of formation + Delta-G solvation = 30.928295 kcal Electronic energy + Delta-G solvation = -16649.406274 eV Core-core repulsion = 13831.120030 eV Total energy + Delta-G solvation = -2818.286244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.88048 -40.74613 -38.14855 -36.40155 -34.55407 -34.51731 -31.63164 -30.15618 -28.99862 -26.05935 -24.61504 -23.58784 -23.06398 -21.77232 -19.48507 -18.68587 -17.89555 -17.61806 -17.21889 -17.00526 -16.46021 -16.12395 -16.03634 -15.04244 -14.93526 -14.55214 -14.12247 -14.09802 -13.30943 -13.29881 -12.96706 -12.81201 -12.66839 -12.24647 -12.06941 -11.55802 -11.36919 -11.13643 -10.83127 -10.10638 -9.90943 -8.92976 -8.30821 -6.48158 -0.76123 0.26168 1.31607 1.44372 1.46245 1.49063 1.57265 1.98874 2.17937 2.41905 2.51526 3.05180 3.22926 3.45819 3.54979 3.81340 4.09688 4.40545 4.42815 4.50399 4.88918 4.96961 5.01626 5.06566 5.15890 5.30854 5.42259 5.56174 5.59295 5.77678 5.90497 6.55585 6.64926 6.73286 7.08760 7.27343 8.81088 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043302 B = 0.005024 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.460470 B = 5572.014522 C = 6196.975628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.557 4.557 8 H 0.091 0.909 9 C 0.267 3.733 10 N -0.683 5.683 11 C 0.541 3.459 12 O -0.587 6.587 13 C 0.000 4.000 14 C -0.061 4.061 15 C -0.097 4.097 16 C -0.052 4.052 17 C 0.185 3.815 18 N -0.512 5.512 19 C 0.026 3.974 20 C -0.100 4.100 21 N -0.346 5.346 22 H 0.269 0.731 23 H -0.007 1.007 24 H -0.006 1.006 25 H 0.413 0.587 26 H 0.185 0.815 27 H 0.205 0.795 28 H 0.188 0.812 29 H 0.211 0.789 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.577 -11.738 0.628 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.595 4.595 8 H 0.109 0.891 9 C 0.145 3.855 10 N -0.334 5.334 11 C 0.328 3.672 12 O -0.469 6.469 13 C -0.106 4.106 14 C -0.082 4.082 15 C -0.119 4.119 16 C -0.072 4.072 17 C -0.056 4.056 18 N -0.233 5.233 19 C -0.126 4.126 20 C -0.233 4.233 21 N -0.017 5.017 22 H 0.078 0.922 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.251 0.749 26 H 0.203 0.797 27 H 0.222 0.778 28 H 0.205 0.795 29 H 0.228 0.772 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 12.841 -12.492 0.649 17.927 hybrid contribution -0.857 1.729 -0.108 1.932 sum 11.985 -10.763 0.541 16.117 Atomic orbital electron populations 1.70129 1.08367 1.28750 1.49692 1.26054 0.95717 1.03921 0.93707 0.85192 0.77881 0.76445 0.79628 1.18500 1.21454 1.18458 1.21557 0.94568 0.90046 1.53326 0.89121 1.18690 0.88509 0.83613 0.94706 1.45964 1.11872 1.04226 1.71296 1.18106 0.87572 0.83769 0.77778 1.90747 1.18392 1.85184 1.52616 1.20225 0.95019 0.82821 1.12506 1.21970 0.88108 1.03707 0.94463 1.21546 1.02739 0.89520 0.98137 1.21005 0.88696 1.00317 0.97161 1.21813 0.93912 0.82159 1.07733 1.70622 1.04295 1.24660 1.23726 1.23019 0.94467 0.93149 1.02010 1.23162 0.88156 0.95918 1.16092 1.42680 1.08695 1.06069 1.44302 0.92210 0.98863 0.98852 0.74873 0.79747 0.77848 0.79519 0.77222 0.80732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.99 40.29 29.54 68.60 2.03 42.32 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.56 -28.58 9.28 25.60 0.24 -28.34 16 8 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 14.00 5.43 85.63 0.47 14.46 16 10 N -0.68 -27.33 5.49 -470.47 -2.58 -29.92 16 11 C 0.54 22.11 7.74 86.56 0.67 22.78 16 12 O -0.59 -29.15 14.64 -4.20 -0.06 -29.21 16 13 C 0.00 0.01 6.78 40.37 0.27 0.28 16 14 C -0.06 -1.22 9.53 22.53 0.21 -1.01 16 15 C -0.10 -1.32 10.04 22.21 0.22 -1.10 16 16 C -0.05 -0.95 10.09 22.45 0.23 -0.73 16 17 C 0.19 5.38 7.80 134.09 1.05 6.43 16 18 N -0.51 -15.96 11.31 -194.28 -2.20 -18.15 16 19 C 0.03 0.76 11.83 83.84 0.99 1.75 16 20 C -0.10 -3.44 10.80 83.36 0.90 -2.54 16 21 N -0.35 -11.59 2.97 -339.78 -1.01 -12.60 16 22 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.41 12.68 6.32 -92.71 -0.59 12.09 16 26 H 0.19 2.57 6.34 -2.91 -0.02 2.55 16 27 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 28 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.21 4.52 8.06 -2.91 -0.02 4.49 16 30 H 0.18 6.48 6.67 -2.91 -0.02 6.46 16 Total: -1.00 -76.01 269.01 2.77 -73.24 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.60 Total: 15.80 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.71 Total: 12.76 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -5.50 Total: -114.91 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.06 Total: -29.21 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -76.01 2.77 -73.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621605.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.171 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds