Wall clock time and date at job start Sun Mar 29 2020 22:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00053 * 2 1 4 4 H 1.48498 * 109.47131 * 269.99717 * 3 2 1 5 5 H 1.48495 * 109.47360 * 29.99687 * 3 2 1 6 6 H 1.48500 * 109.47377 * 149.99706 * 3 2 1 7 7 C 1.37881 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47113 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47204 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54075 * 68.37789 * 11 10 9 13 13 O 1.42101 * 110.54364 * 291.62548 * 11 10 9 14 14 N 1.65602 * 104.44988 * 180.02562 * 11 10 9 15 15 C 1.46501 * 120.00228 * 64.99898 * 14 11 10 16 16 H 1.09001 * 110.33929 * 22.71447 * 15 14 11 17 17 C 1.51097 * 110.48179 * 260.36252 * 15 14 11 18 18 C 1.30528 * 111.10203 * 224.69830 * 17 15 14 19 19 C 1.51106 * 111.10324 * 0.02562 * 18 17 15 20 20 C 1.54627 * 110.38685 * 144.99958 * 15 14 11 21 21 H 0.97002 * 119.99879 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46964 * 59.99893 * 9 7 2 23 23 H 1.08999 * 109.47004 * 300.00018 * 9 7 2 24 24 H 1.09005 * 109.47362 * 60.00036 * 10 9 7 25 25 H 1.08999 * 109.47465 * 300.00060 * 10 9 7 26 26 H 0.97005 * 120.00061 * 245.00135 * 14 11 10 27 27 H 1.07996 * 124.45390 * 44.72237 * 17 15 14 28 28 H 1.07997 * 124.44973 * 180.26405 * 18 17 15 29 29 H 1.09003 * 110.38579 * 135.24581 * 19 18 17 30 30 H 1.09001 * 110.38515 * 257.50826 * 19 18 17 31 31 H 1.09002 * 111.04087 * 25.52740 * 20 15 14 32 32 H 1.09001 * 111.04142 * 261.59163 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 16 1.3382 -5.2330 0.0013 12 8 0.6639 -5.4200 -1.2354 13 8 0.6646 -5.4193 1.2386 14 7 2.5204 -6.3927 0.0020 15 6 3.4188 -6.5223 1.1519 16 1 2.9573 -6.0969 2.0431 17 6 4.7401 -5.8461 0.8694 18 6 5.7410 -6.5947 1.2456 19 6 5.2540 -7.8952 1.8411 20 6 3.7798 -8.0071 1.3887 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5566 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 2.6181 -6.9862 -0.7591 27 1 4.8430 -4.8712 0.4162 28 1 6.7807 -6.3190 1.1479 29 1 5.8353 -8.7317 1.4531 30 1 5.3173 -7.8620 2.9288 31 1 3.6964 -8.5821 0.4665 32 1 3.1609 -8.4397 2.1748 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849429986.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:27 Heat of formation + Delta-G solvation = -93.664296 kcal Electronic energy + Delta-G solvation = -15863.139501 eV Core-core repulsion = 13142.601717 eV Total energy + Delta-G solvation = -2720.537784 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80255 -38.12894 -37.02190 -35.89745 -34.52584 -33.13394 -29.86225 -27.58883 -27.48632 -23.61027 -21.96533 -20.42351 -19.74076 -19.13773 -18.32538 -17.68945 -17.01173 -16.56438 -16.52502 -16.14315 -15.20770 -14.62682 -14.47753 -13.76903 -13.67314 -13.52268 -13.21164 -13.11885 -12.93317 -12.83400 -12.72725 -12.54239 -12.24942 -12.16241 -12.09961 -11.96768 -11.73685 -11.17486 -10.64730 -10.40137 -9.90169 -8.26009 -6.40015 -0.66730 1.30517 1.40764 1.42663 1.53727 1.93421 2.38038 2.80928 3.07547 3.26432 3.62933 3.75445 4.00290 4.11998 4.13440 4.33203 4.52007 4.53724 4.75221 4.90682 4.99502 5.03502 5.21374 5.27284 5.28162 5.38234 5.63452 5.68554 5.91939 6.06340 6.18652 6.73639 7.30183 8.86419 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.006186 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.513113 B = 4524.955047 C = 5233.632502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.020 3.980 10 C -0.586 4.586 11 S 2.618 3.382 12 O -1.001 7.001 13 O -0.999 6.999 14 N -1.097 6.097 15 C 0.154 3.846 16 H 0.093 0.907 17 C -0.212 4.212 18 C -0.140 4.140 19 C -0.101 4.101 20 C -0.125 4.125 21 H 0.267 0.733 22 H 0.006 0.994 23 H 0.007 0.993 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.425 0.575 27 H 0.128 0.872 28 H 0.144 0.856 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.413 -15.027 2.535 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.577 4.577 8 H 0.094 0.906 9 C -0.019 4.019 10 C -0.718 4.718 11 S 2.715 3.285 12 O -0.991 6.991 13 O -0.989 6.989 14 N -0.857 5.857 15 C 0.048 3.952 16 H 0.111 0.889 17 C -0.231 4.231 18 C -0.158 4.158 19 C -0.138 4.138 20 C -0.164 4.164 21 H 0.076 0.924 22 H 0.024 0.976 23 H 0.025 0.975 24 H 0.158 0.842 25 H 0.161 0.839 26 H 0.261 0.739 27 H 0.146 0.854 28 H 0.161 0.839 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.262 -15.021 2.695 19.577 hybrid contribution 0.408 1.257 -0.432 1.390 sum 12.670 -13.764 2.263 18.844 Atomic orbital electron populations 1.70103 1.08107 1.28318 1.50930 1.26117 0.95838 1.03882 0.94374 0.85306 0.78640 0.77648 0.78618 1.19616 1.20850 1.18137 1.21515 0.93976 0.90770 1.51466 0.90601 1.18827 0.93617 0.93136 0.96334 1.30368 1.12704 1.16540 1.12186 1.04485 0.74777 0.76614 0.72673 1.93497 1.73287 1.85819 1.46507 1.93497 1.72852 1.85489 1.47031 1.55362 1.51549 1.50427 1.28409 1.20961 0.88498 0.98309 0.87470 0.88933 1.23829 0.94921 1.00939 1.03433 1.23555 0.99348 0.96040 0.96905 1.21445 0.94486 0.96458 1.01446 1.22819 0.97081 0.93371 1.03149 0.92399 0.97578 0.97514 0.84211 0.83936 0.73850 0.85431 0.83878 0.88993 0.89205 0.89276 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.02 1.04 4.98 29.85 0.15 1.19 16 10 C -0.59 -22.30 5.99 71.98 0.43 -21.87 16 11 S 2.62 94.64 5.44 -56.49 -0.31 94.33 16 12 O -1.00 -42.49 18.08 -127.65 -2.31 -44.80 16 13 O -1.00 -42.45 17.43 -127.65 -2.22 -44.67 16 14 N -1.10 -27.41 5.43 -169.66 -0.92 -28.33 16 15 C 0.15 3.39 3.45 44.93 0.16 3.54 16 16 H 0.09 2.25 7.54 -2.39 -0.02 2.23 16 17 C -0.21 -4.18 10.41 26.26 0.27 -3.91 16 18 C -0.14 -2.14 10.78 26.26 0.28 -1.85 16 19 C -0.10 -1.27 6.81 30.53 0.21 -1.06 16 20 C -0.13 -1.98 6.88 31.70 0.22 -1.77 16 21 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 22 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 23 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.14 4.68 8.11 -2.39 -0.02 4.66 16 25 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 26 H 0.42 8.64 8.66 -96.74 -0.84 7.80 16 27 H 0.13 2.60 8.00 -2.91 -0.02 2.58 16 28 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.23 7.90 -2.39 -0.02 1.21 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -75.13 287.56 -0.77 -75.90 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.27 Total: 14.36 kcal Atomic # 6 Polarization: -57.62 SS G_CDS: 2.41 Total: -55.21 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -0.64 Total: -85.31 kcal Atomic # 8 Polarization: -84.94 SS G_CDS: -4.53 Total: -89.48 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 94.64 SS G_CDS: -0.31 Total: 94.33 kcal Total: -75.13 -0.77 -75.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849429986.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.764 kcal (2) G-P(sol) polarization free energy of solvation -75.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds