Wall clock time and date at job start Sun Mar 29 2020 22:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86792 * 120.00410 * 2 1 4 4 H 1.48497 * 109.47475 * 270.00020 * 3 2 1 5 5 H 1.48497 * 109.47037 * 30.00167 * 3 2 1 6 6 H 1.48502 * 109.47259 * 149.99830 * 3 2 1 7 7 C 1.38798 * 119.99446 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99848 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00146 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47183 * 180.02562 * 10 9 7 12 12 O 1.20821 * 119.99879 * 359.97438 * 11 10 9 13 13 O 1.34222 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.45200 * 117.00094 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47003 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.47346 * 65.00226 * 15 14 13 17 17 C 1.47482 * 111.00257 * 74.02580 * 16 15 14 18 18 C 1.53509 * 87.93284 * 138.70887 * 17 16 15 19 19 C 1.47475 * 111.00184 * 169.99748 * 16 15 14 20 20 H 0.97003 * 119.99593 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47033 * 59.99957 * 10 9 7 22 22 H 1.09006 * 109.46937 * 299.99672 * 10 9 7 23 23 H 1.08993 * 109.47475 * 60.00347 * 14 13 11 24 24 H 1.09000 * 109.47147 * 300.00141 * 14 13 11 25 25 H 1.09004 * 109.46579 * 184.99602 * 15 14 13 26 26 H 1.08992 * 109.47046 * 304.99785 * 15 14 13 27 27 H 1.09004 * 113.47389 * 253.47377 * 17 16 15 28 28 H 1.09000 * 113.47745 * 23.93666 * 17 16 15 29 29 H 1.08998 * 114.16767 * 220.33183 * 18 17 16 30 30 H 1.08996 * 114.34875 * 87.63584 * 18 17 16 31 31 H 1.08995 * 113.47815 * 336.06686 * 19 16 15 32 32 H 1.09002 * 113.47776 * 106.52842 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6525 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9870 -5.3028 -0.0012 12 8 0.7953 -5.5016 -0.0011 13 8 2.8402 -6.3390 -0.0018 14 6 2.2605 -7.6703 -0.0018 15 6 3.3795 -8.7138 -0.0019 16 7 4.1369 -8.6198 1.2532 17 6 3.3664 -9.1807 2.3788 18 6 4.6684 -9.8231 2.8774 19 6 5.0661 -9.7560 1.3962 20 1 -0.4850 0.8401 0.0004 21 1 3.1242 -3.7315 0.8894 22 1 3.1242 -3.7315 -0.8906 23 1 1.6440 -7.7981 -0.8915 24 1 1.6447 -7.7984 0.8884 25 1 2.9469 -9.7103 -0.0914 26 1 4.0471 -8.5305 -0.8437 27 1 2.9699 -8.4225 3.0541 28 1 2.6140 -9.9068 2.0709 29 1 4.5477 -10.8359 3.2616 30 1 5.2641 -9.1838 3.5289 31 1 4.7675 -10.6356 0.8260 32 1 6.1102 -9.4855 1.2388 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861384058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:36 Heat of formation + Delta-G solvation = -50.987836 kcal Electronic energy + Delta-G solvation = -15106.148375 eV Core-core repulsion = 12387.461181 eV Total energy + Delta-G solvation = -2718.687194 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38803 -39.66377 -36.09599 -32.45562 -32.23880 -29.59811 -27.04245 -26.05084 -25.51118 -22.42871 -20.91381 -20.04579 -17.89301 -17.11963 -16.75790 -16.12433 -15.84477 -15.46986 -14.81941 -14.51388 -14.03911 -13.62811 -13.28408 -12.93517 -12.64424 -12.50823 -12.07278 -11.75951 -11.41863 -11.12056 -11.07061 -11.03484 -10.82119 -10.76864 -10.33970 -9.93237 -9.86731 -9.11134 -9.08574 -8.31717 -6.56529 -6.24375 -3.96528 2.72038 2.75334 3.22829 3.26617 3.31226 3.57742 3.73229 4.17629 4.18858 4.51616 4.62390 4.92693 4.96917 5.04956 5.10662 5.11477 5.27643 5.34034 5.41729 5.48155 5.53536 5.62928 5.67406 5.85492 5.86824 6.05875 6.15560 6.72924 6.84056 7.58554 8.26795 8.33651 9.21158 10.83207 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.047415 B = 0.004012 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.390926 B = 6977.022854 C = 7262.379268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.076 0.924 9 S -0.061 6.061 10 C -0.127 4.127 11 C 0.478 3.522 12 O -0.494 6.494 13 O -0.346 6.346 14 C 0.073 3.927 15 C 0.020 3.980 16 N -0.463 5.463 17 C -0.009 4.009 18 C -0.146 4.146 19 C -0.005 4.005 20 H 0.269 0.731 21 H 0.103 0.897 22 H 0.102 0.898 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.773 -18.903 2.294 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.683 4.683 8 H 0.094 0.906 9 S 0.166 5.834 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.380 6.380 13 O -0.264 6.264 14 C -0.002 4.002 15 C -0.109 4.109 16 N -0.186 5.186 17 C -0.138 4.138 18 C -0.183 4.183 19 C -0.134 4.134 20 H 0.079 0.921 21 H 0.121 0.879 22 H 0.120 0.880 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.350 -18.384 2.269 19.928 hybrid contribution 1.359 0.349 -0.218 1.420 sum 8.709 -18.034 2.050 20.132 Atomic orbital electron populations 1.70019 1.05992 1.27572 1.46742 1.25002 0.95063 0.99102 0.94374 0.86117 0.79424 0.81276 0.78400 1.20211 1.20734 1.19566 1.22855 0.95049 0.91198 1.59211 0.90588 1.85382 1.04594 0.96590 1.96879 1.23274 1.06778 0.91002 1.06445 1.23313 0.85182 0.87298 0.72265 1.90653 1.17054 1.85780 1.44527 1.86585 1.40543 1.14764 1.84462 1.22876 0.95057 0.79847 1.02459 1.22769 0.96374 0.96459 0.95279 1.69088 1.10675 1.36228 1.02575 1.23851 0.96289 0.98516 0.95109 1.23089 0.97495 1.01271 0.96469 1.23793 0.99703 0.93427 0.96469 0.92117 0.87915 0.88023 0.90871 0.91414 0.92000 0.89190 0.89511 0.91349 0.90741 0.88771 0.91475 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.08 2.06 7.80 -52.48 -0.41 1.65 16 9 S -0.06 -1.66 20.58 -107.50 -2.21 -3.87 16 10 C -0.13 -2.70 6.27 36.01 0.23 -2.48 16 11 C 0.48 9.62 7.97 36.01 0.29 9.91 16 12 O -0.49 -11.22 15.61 -18.75 -0.29 -11.51 16 13 O -0.35 -5.90 10.17 -39.24 -0.40 -6.30 16 14 C 0.07 0.97 5.64 37.16 0.21 1.18 16 15 C 0.02 0.20 5.22 -3.82 -0.02 0.18 16 16 N -0.46 -5.12 6.37 -244.69 -1.56 -6.68 16 17 C -0.01 -0.08 6.93 -7.55 -0.05 -0.13 16 18 C -0.15 -1.09 8.47 -26.20 -0.22 -1.32 16 19 C 0.00 -0.04 7.70 -7.55 -0.06 -0.10 16 20 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.10 2.06 8.14 -51.92 -0.42 1.64 16 22 H 0.10 2.01 8.14 -51.91 -0.42 1.59 16 23 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 24 H 0.07 0.92 7.54 -51.93 -0.39 0.53 16 25 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.44 7.77 -51.93 -0.40 0.04 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -33.12 291.84 -8.30 -41.41 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.51 Total: -2.76 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 0.57 Total: -5.74 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: -0.82 Total: -32.04 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.69 Total: -17.81 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.12 -8.30 -41.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861384058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.574 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds