Wall clock time and date at job start Sun Mar 29 2020 22:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00224 * 2 1 4 4 C 1.50697 * 108.82962 * 184.56791 * 3 2 1 5 5 O 1.21293 * 120.00143 * 3.74550 * 4 3 2 6 6 N 1.34780 * 119.99845 * 183.74486 * 4 3 2 7 7 C 1.46498 * 119.99930 * 354.70226 * 6 4 3 8 8 C 1.37094 * 119.99838 * 174.69819 * 6 4 3 9 9 H 1.08000 * 120.00398 * 5.07041 * 8 6 4 10 10 C 1.38953 * 119.99946 * 184.79143 * 8 6 4 11 11 N 1.31407 * 120.00333 * 351.45855 * 10 8 6 12 12 Si 1.86805 * 119.99957 * 171.46571 * 10 8 6 13 13 H 1.48501 * 109.46987 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47242 * 120.00139 * 12 10 8 15 15 H 1.48506 * 109.46654 * 239.99883 * 12 10 8 16 16 C 1.52340 * 108.86530 * 66.04032 * 3 2 1 17 17 C 1.54254 * 112.58748 * 239.32407 * 16 3 2 18 18 S 1.83959 * 102.58224 * 24.52839 * 17 16 3 19 19 C 1.54260 * 108.75760 * 303.03821 * 3 2 1 20 20 H 1.09005 * 109.47213 * 65.83778 * 1 2 3 21 21 H 1.09001 * 109.47053 * 185.82993 * 1 2 3 22 22 H 1.09001 * 109.47206 * 305.83545 * 1 2 3 23 23 H 1.09003 * 109.46853 * 234.51593 * 7 6 4 24 24 H 1.08991 * 109.47562 * 354.51633 * 7 6 4 25 25 H 1.09003 * 109.47318 * 114.51679 * 7 6 4 26 26 H 0.96996 * 120.00644 * 179.97438 * 11 10 8 27 27 H 1.08998 * 108.86830 * 0.14446 * 16 3 2 28 28 H 1.08996 * 108.87028 * 118.64618 * 16 3 2 29 29 H 1.09003 * 110.78857 * 142.79838 * 17 16 3 30 30 H 1.08998 * 110.79076 * 266.25836 * 17 16 3 31 31 H 1.09001 * 110.78419 * 214.48487 * 19 3 2 32 32 H 1.09002 * 110.78110 * 337.93257 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5069 1.1714 -0.1136 5 8 4.0088 0.0762 -0.2547 6 7 4.2879 2.2685 -0.0585 7 6 3.6783 3.5995 -0.0050 8 6 5.6526 2.1388 -0.0523 9 1 6.1031 1.1648 -0.1740 10 6 6.4565 3.2613 0.1048 11 7 5.9217 4.4613 0.0790 12 14 8.2976 3.0644 0.3524 13 1 8.6467 1.6210 0.3430 14 1 9.0213 3.7564 -0.7442 15 1 8.6880 3.6592 1.6559 16 6 1.6758 1.9935 1.3174 17 6 0.8900 3.3058 1.1176 18 16 0.0870 3.0471 -0.5172 19 6 1.4845 2.0825 -1.2245 20 1 -0.3634 0.4207 -0.9377 21 1 -0.3633 -1.0224 0.1044 22 1 -0.3634 0.6017 0.8331 23 1 4.0767 4.2143 -0.8121 24 1 2.5978 3.5092 -0.1166 25 1 3.9067 4.0656 0.9535 26 1 6.4827 5.2449 0.1890 27 1 1.0799 1.3152 1.9280 28 1 2.6037 2.2173 1.8437 29 1 0.1420 3.4318 1.9003 30 1 1.5658 4.1604 1.0856 31 1 2.2527 2.7473 -1.6196 32 1 1.1309 1.3971 -1.9948 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900452946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:36 Heat of formation + Delta-G solvation = -38.852140 kcal Electronic energy + Delta-G solvation = -17118.528696 eV Core-core repulsion = 14400.367745 eV Total energy + Delta-G solvation = -2718.160951 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97296 -37.24696 -35.00088 -33.73167 -31.35605 -29.40777 -27.06130 -26.40495 -25.31042 -23.76483 -21.20399 -19.21683 -17.15819 -16.90931 -16.08287 -15.84719 -15.07054 -14.91517 -14.54577 -14.06435 -13.92610 -13.31906 -12.99938 -12.58231 -12.32255 -12.08116 -11.82770 -11.51763 -11.33423 -11.21638 -11.03710 -10.90502 -10.68962 -10.36973 -10.16609 -9.95115 -9.40635 -9.11418 -8.35713 -7.96391 -7.55285 -6.31857 -3.89299 1.92911 2.30628 3.09747 3.21094 3.28100 3.65849 3.83898 4.16952 4.63738 4.73464 4.87198 5.06938 5.12485 5.29789 5.43957 5.48996 5.63850 5.70973 5.79784 5.86010 5.98333 6.07924 6.22945 6.28181 6.93609 7.29346 7.39874 7.49740 7.98051 8.39969 9.09561 9.32009 9.85418 10.61075 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036168 B = 0.008355 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.985785 B = 3350.493139 C = 3829.143191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.348 6.348 3 C 0.114 3.886 4 C 0.451 3.549 5 O -0.568 6.568 6 N -0.441 5.441 7 C 0.092 3.908 8 C -0.300 4.300 9 H 0.107 0.893 10 C 0.028 3.972 11 N -0.886 5.886 12 Si 0.931 3.069 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.280 1.280 16 C -0.150 4.150 17 C -0.067 4.067 18 S -0.305 6.305 19 C -0.089 4.089 20 H 0.045 0.955 21 H 0.079 0.921 22 H 0.047 0.953 23 H 0.085 0.915 24 H 0.036 0.964 25 H 0.060 0.940 26 H 0.266 0.734 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 0.983 1.656 9.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.266 6.266 3 C 0.068 3.932 4 C 0.236 3.764 5 O -0.451 6.451 6 N -0.161 5.161 7 C -0.051 4.051 8 C -0.427 4.427 9 H 0.125 0.875 10 C -0.174 4.174 11 N -0.527 5.527 12 Si 0.758 3.242 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.206 1.206 16 C -0.189 4.189 17 C -0.214 4.214 18 S -0.078 6.078 19 C -0.237 4.237 20 H 0.064 0.936 21 H 0.098 0.902 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.410 0.839 1.142 10.506 hybrid contribution 1.664 0.153 0.564 1.764 sum -8.746 0.992 1.706 8.966 Atomic orbital electron populations 1.22928 0.81716 1.01723 1.00946 1.88161 1.18947 1.24762 1.94686 1.21825 0.94808 0.84668 0.91911 1.19117 0.85644 0.85370 0.86302 1.90546 1.74070 1.26115 1.54394 1.43599 1.05987 1.04309 1.62218 1.22423 0.93247 0.84824 1.04579 1.19880 0.79760 0.95995 1.47076 0.87544 1.25314 1.00884 0.94592 0.96617 1.70153 1.35624 0.97719 1.49196 0.85770 0.81692 0.78829 0.77930 1.19139 1.20670 1.20573 1.22699 1.02457 0.95713 0.98060 1.24414 1.01099 1.00917 0.95012 1.87721 1.29067 1.73116 1.17903 1.25194 0.97479 1.00567 1.00505 0.93611 0.90223 0.93422 0.89671 0.94584 0.92153 0.92300 0.89418 0.88662 0.87713 0.87721 0.86900 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.35 101.05 0.95 1.29 16 2 O -0.35 -6.83 9.63 -55.45 -0.53 -7.37 16 3 C 0.11 2.20 0.71 -91.45 -0.07 2.13 16 4 C 0.45 11.13 6.07 -10.99 -0.07 11.06 16 5 O -0.57 -16.38 16.06 -14.67 -0.24 -16.62 16 6 N -0.44 -11.04 2.87 -122.20 -0.35 -11.39 16 7 C 0.09 1.99 5.69 59.85 0.34 2.33 16 8 C -0.30 -8.18 9.56 -14.93 -0.14 -8.33 16 9 H 0.11 3.08 7.19 -52.49 -0.38 2.70 16 10 C 0.03 0.71 5.44 -17.47 -0.10 0.62 16 11 N -0.89 -22.43 9.48 55.50 0.53 -21.90 16 12 Si 0.93 20.37 29.56 -169.99 -5.03 15.35 16 13 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 C -0.15 -2.46 4.27 -26.41 -0.11 -2.57 16 17 C -0.07 -0.91 6.58 37.81 0.25 -0.67 16 18 S -0.30 -4.51 21.00 -107.50 -2.26 -6.77 16 19 C -0.09 -1.54 5.04 37.82 0.19 -1.34 16 20 H 0.05 0.63 6.29 -51.93 -0.33 0.31 16 21 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.05 0.63 6.22 -51.93 -0.32 0.31 16 23 H 0.08 2.00 6.71 -51.93 -0.35 1.65 16 24 H 0.04 0.66 1.45 -51.93 -0.08 0.58 16 25 H 0.06 1.35 7.37 -51.93 -0.38 0.97 16 26 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 27 H 0.09 1.31 6.64 -51.93 -0.34 0.97 16 28 H 0.09 1.73 6.70 -51.93 -0.35 1.38 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.45 6.39 -51.93 -0.33 1.12 16 31 H 0.11 2.07 5.86 -51.93 -0.30 1.76 16 32 H 0.11 1.85 7.31 -51.93 -0.38 1.47 16 LS Contribution 255.35 15.07 3.85 3.85 Total: -1.00 -30.23 255.35 -6.31 -36.54 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.52 Total: 3.79 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 1.24 Total: 4.52 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.18 Total: -33.29 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.77 Total: -23.99 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.35 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -2.26 Total: -6.77 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.23 -6.31 -36.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900452946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.314 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds