Wall clock time and date at job start Sun Mar 29 2020 23:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99754 * 2 1 4 4 H 1.48494 * 109.47282 * 269.99872 * 3 2 1 5 5 H 1.48500 * 109.47382 * 30.00381 * 3 2 1 6 6 H 1.48507 * 109.47339 * 150.00108 * 3 2 1 7 7 C 1.37875 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00040 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00378 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47642 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47262 * 179.97438 * 10 9 7 12 12 N 1.30448 * 126.18529 * 90.00172 * 11 10 9 13 13 N 1.28665 * 109.50404 * 179.73027 * 12 11 10 14 14 C 1.31209 * 109.24202 * 0.44523 * 13 12 11 15 15 C 1.47880 * 126.37017 * 179.82833 * 14 13 12 16 16 C 1.39967 * 120.92219 * 179.97438 * 15 14 13 17 17 C 1.37955 * 118.99529 * 180.25733 * 16 15 14 18 18 N 1.31929 * 120.89908 * 359.48146 * 17 16 15 19 19 C 1.31922 * 122.06019 * 0.27669 * 18 17 16 20 20 C 1.37963 * 120.89944 * 359.97438 * 19 18 17 21 21 O 1.34329 * 126.18702 * 270.00697 * 11 10 9 22 22 H 0.96995 * 119.99841 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46668 * 60.00109 * 9 7 2 24 24 H 1.09005 * 109.47128 * 300.00557 * 9 7 2 25 25 H 1.08998 * 109.46322 * 59.99857 * 10 9 7 26 26 H 1.09000 * 109.47040 * 300.00378 * 10 9 7 27 27 H 1.08001 * 120.50209 * 0.02562 * 16 15 14 28 28 H 1.08002 * 119.55334 * 179.76185 * 17 16 15 29 29 H 1.07999 * 119.55519 * 180.02562 * 19 18 17 30 30 H 1.07996 * 120.50465 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0217 -2.6366 0.0014 11 6 5.5286 -2.6365 0.0001 12 7 6.2997 -2.6352 1.0524 13 7 7.5318 -2.6413 0.6821 14 6 7.5894 -2.6372 -0.6287 15 6 8.8175 -2.6382 -1.4526 16 6 8.7459 -2.6339 -2.8504 17 6 9.9167 -2.6404 -3.5800 18 7 11.0904 -2.6403 -2.9775 19 6 11.2029 -2.6394 -1.6631 20 6 10.0837 -2.6381 -0.8563 21 8 6.3209 -2.6377 -1.0847 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 3.6579 -3.1513 -0.8879 26 1 3.6586 -3.1494 0.8920 27 1 7.7886 -2.6294 -3.3502 28 1 9.8720 -2.6411 -4.6591 29 1 12.1843 -2.6390 -1.2124 30 1 10.1832 -2.6369 0.2191 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118362975.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:51 Heat of formation + Delta-G solvation = 66.405879 kcal Electronic energy + Delta-G solvation = -16197.405256 eV Core-core repulsion = 13380.657435 eV Total energy + Delta-G solvation = -2816.747820 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.05974 -40.35060 -36.08606 -34.83920 -33.66027 -32.06381 -31.65744 -29.65359 -26.41525 -24.90401 -23.87973 -22.48563 -22.19946 -20.76585 -18.25131 -17.32364 -16.98018 -16.65586 -16.06063 -16.05057 -14.53835 -14.43906 -14.23977 -14.08211 -13.96004 -13.52500 -12.82290 -12.34866 -12.13634 -11.89535 -11.79484 -11.29033 -11.10955 -10.92685 -10.40452 -10.30508 -9.96653 -9.93274 -9.57575 -9.44592 -8.94256 -8.69032 -6.19553 -4.20882 0.18607 0.74430 1.63846 2.19132 2.52928 3.21761 3.30455 3.34076 3.47334 3.67265 4.08287 4.30892 4.32554 4.56013 4.64495 4.72380 5.10542 5.13803 5.18633 5.23058 5.43540 5.53974 5.67510 5.83684 5.91269 5.91995 6.22123 6.32159 6.91656 7.05987 7.53853 7.54880 8.31517 8.35111 8.81733 9.40678 10.92942 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036630 B = 0.004583 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.217555 B = 6107.657726 C = 6352.571090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.018 4.018 11 C 0.208 3.792 12 N -0.297 5.297 13 N -0.258 5.258 14 C 0.165 3.835 15 C 0.039 3.961 16 C -0.144 4.144 17 C 0.104 3.896 18 N -0.477 5.477 19 C 0.103 3.897 20 C -0.129 4.129 21 O -0.216 6.216 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.017 0.983 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.146 0.854 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.936 -5.492 -5.471 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.097 0.903 9 C -0.046 4.046 10 C -0.057 4.057 11 C 0.000 4.000 12 N -0.144 5.144 13 N -0.107 5.107 14 C -0.043 4.043 15 C 0.029 3.971 16 C -0.165 4.165 17 C -0.053 4.053 18 N -0.186 5.186 19 C -0.054 4.054 20 C -0.150 4.150 21 O -0.096 6.096 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.164 0.836 28 H 0.183 0.817 29 H 0.184 0.816 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 19.859 -5.380 -4.717 21.109 hybrid contribution -0.901 0.980 -0.653 1.483 sum 18.958 -4.401 -5.370 20.189 Atomic orbital electron populations 1.69885 1.06222 1.27244 1.49936 1.24936 0.94731 0.99093 0.94102 0.86834 0.80483 0.83705 0.78685 1.20112 1.20949 1.19028 1.20902 0.88192 0.95032 1.52432 0.90315 1.19648 0.98059 0.89391 0.97530 1.20628 0.76450 1.03225 1.05396 1.29151 0.98450 0.94069 0.78359 1.74525 0.95254 1.19337 1.25302 1.74619 1.13307 1.14776 1.08030 1.25072 0.83824 1.04633 0.90744 1.17521 0.87586 1.00315 0.91694 1.22357 1.01622 0.99802 0.92748 1.22744 0.86686 0.95017 1.00849 1.67650 1.28222 1.10769 1.11977 1.22772 0.98702 0.95121 0.88784 1.22244 0.90944 0.98975 1.02806 1.84844 1.16527 1.69558 1.38630 0.92386 0.95376 0.96452 0.88650 0.87023 0.83598 0.81744 0.81634 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.96 55.43 0.77 -25.77 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.53 -14.16 9.66 -34.44 -0.33 -14.50 16 8 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.18 4.02 -27.88 -0.11 -0.29 16 10 C -0.02 -0.34 5.78 -27.88 -0.16 -0.50 16 11 C 0.21 3.80 7.72 -12.87 -0.10 3.70 16 12 N -0.30 -5.73 12.22 32.57 0.40 -5.33 16 13 N -0.26 -4.57 12.01 32.07 0.39 -4.18 16 14 C 0.17 2.60 8.02 -13.87 -0.11 2.49 16 15 C 0.04 0.48 5.91 -104.66 -0.62 -0.14 16 16 C -0.14 -1.47 9.83 -39.04 -0.38 -1.86 16 17 C 0.10 0.93 11.17 -17.61 -0.20 0.74 16 18 N -0.48 -4.83 10.34 -13.35 -0.14 -4.96 16 19 C 0.10 0.91 11.17 -17.61 -0.20 0.71 16 20 C -0.13 -1.31 9.79 -39.04 -0.38 -1.69 16 21 O -0.22 -3.66 10.76 4.26 0.05 -3.61 16 22 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 23 H 0.03 0.66 7.20 -51.92 -0.37 0.29 16 24 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 25 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 27 H 0.15 1.34 8.02 -52.49 -0.42 0.92 16 28 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 29 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.15 1.41 7.95 -52.49 -0.42 0.99 16 LS Contribution 275.52 15.07 4.15 4.15 Total: -1.00 -31.58 275.52 -4.63 -36.21 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -2.88 Total: -3.62 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.69 Total: -9.37 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 1.42 Total: -40.25 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: 0.05 Total: -3.61 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.58 -4.63 -36.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118362975.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.616 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds