Wall clock time and date at job start Sun Mar 29 2020 23:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99754 * 2 1 4 4 H 1.48494 * 109.47282 * 269.99872 * 3 2 1 5 5 H 1.48500 * 109.47382 * 30.00381 * 3 2 1 6 6 H 1.48507 * 109.47339 * 150.00108 * 3 2 1 7 7 C 1.37875 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00040 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00378 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47642 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47262 * 179.97438 * 10 9 7 12 12 N 1.30448 * 126.18529 * 90.00172 * 11 10 9 13 13 N 1.28665 * 109.50404 * 179.73027 * 12 11 10 14 14 C 1.31209 * 109.24202 * 0.44523 * 13 12 11 15 15 C 1.47880 * 126.37017 * 179.82833 * 14 13 12 16 16 C 1.39967 * 120.92219 * 179.97438 * 15 14 13 17 17 C 1.37955 * 118.99529 * 180.25733 * 16 15 14 18 18 N 1.31929 * 120.89908 * 359.48146 * 17 16 15 19 19 C 1.31922 * 122.06019 * 0.27669 * 18 17 16 20 20 C 1.37963 * 120.89944 * 359.97438 * 19 18 17 21 21 O 1.34329 * 126.18702 * 270.00697 * 11 10 9 22 22 H 0.96995 * 119.99841 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46668 * 60.00109 * 9 7 2 24 24 H 1.09005 * 109.47128 * 300.00557 * 9 7 2 25 25 H 1.08998 * 109.46322 * 59.99857 * 10 9 7 26 26 H 1.09000 * 109.47040 * 300.00378 * 10 9 7 27 27 H 1.08001 * 120.50209 * 0.02562 * 16 15 14 28 28 H 1.08002 * 119.55334 * 179.76185 * 17 16 15 29 29 H 1.07999 * 119.55519 * 180.02562 * 19 18 17 30 30 H 1.07996 * 120.50465 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0217 -2.6366 0.0014 11 6 5.5286 -2.6365 0.0001 12 7 6.2997 -2.6352 1.0524 13 7 7.5318 -2.6413 0.6821 14 6 7.5894 -2.6372 -0.6287 15 6 8.8175 -2.6382 -1.4526 16 6 8.7459 -2.6339 -2.8504 17 6 9.9167 -2.6404 -3.5800 18 7 11.0904 -2.6403 -2.9775 19 6 11.2029 -2.6394 -1.6631 20 6 10.0837 -2.6381 -0.8563 21 8 6.3209 -2.6377 -1.0847 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 3.6579 -3.1513 -0.8879 26 1 3.6586 -3.1494 0.8920 27 1 7.7886 -2.6294 -3.3502 28 1 9.8720 -2.6411 -4.6591 29 1 12.1843 -2.6390 -1.2124 30 1 10.1832 -2.6369 0.2191 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118362975.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:50 Heat of formation + Delta-G solvation = 42.225546 kcal Electronic energy + Delta-G solvation = -16198.453793 eV Core-core repulsion = 13380.657435 eV Total energy + Delta-G solvation = -2817.796358 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.38490 -41.11374 -37.42230 -36.44321 -34.91032 -33.81419 -32.39043 -31.09808 -28.05968 -26.02468 -24.87919 -23.86289 -23.26728 -22.44162 -19.36498 -19.00825 -18.51583 -17.71765 -17.08939 -16.79847 -16.40006 -15.70200 -15.43807 -15.03791 -15.00550 -14.75307 -14.71066 -13.72707 -13.65454 -13.21195 -13.03309 -12.85682 -12.64716 -12.29927 -12.06121 -11.81122 -11.78200 -11.51067 -10.81657 -10.70601 -10.28359 -10.16569 -8.33824 -6.38995 -0.82283 0.03340 0.45219 0.94459 1.25130 1.31600 1.35351 1.44700 2.30947 2.49844 2.71485 3.01437 3.14783 3.46560 3.57356 3.78228 3.96396 4.01715 4.10566 4.16336 4.30438 4.41959 4.49596 4.74279 4.77419 4.78811 5.02865 5.14568 5.26805 5.51821 5.52447 6.18018 6.68228 6.82919 7.01693 7.25882 8.81846 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036630 B = 0.004583 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.217555 B = 6107.657726 C = 6352.571090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.017 3.983 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.530 4.530 8 H 0.053 0.947 9 C -0.004 4.004 10 C -0.008 4.008 11 C 0.199 3.801 12 N -0.317 5.317 13 N -0.285 5.285 14 C 0.187 3.813 15 C 0.007 3.993 16 C -0.142 4.142 17 C 0.107 3.893 18 N -0.488 5.488 19 C 0.109 3.891 20 C -0.127 4.127 21 O -0.218 6.218 22 H 0.269 0.731 23 H 0.020 0.980 24 H 0.022 0.978 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.155 0.845 28 H 0.196 0.804 29 H 0.199 0.801 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.478 -5.163 -6.637 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.568 4.568 8 H 0.072 0.928 9 C -0.042 4.042 10 C -0.046 4.046 11 C -0.011 4.011 12 N -0.164 5.164 13 N -0.133 5.133 14 C -0.022 4.022 15 C -0.002 4.002 16 C -0.163 4.163 17 C -0.049 4.049 18 N -0.198 5.198 19 C -0.048 4.048 20 C -0.148 4.148 21 O -0.097 6.097 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.130 0.870 26 H 0.135 0.865 27 H 0.173 0.827 28 H 0.213 0.787 29 H 0.216 0.784 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 22.427 -5.064 -5.875 23.730 hybrid contribution -1.572 0.792 -0.364 1.798 sum 20.855 -4.272 -6.239 22.183 Atomic orbital electron populations 1.70013 1.07928 1.28288 1.51836 1.25785 0.95467 1.02847 0.94057 0.85847 0.79295 0.79422 0.79261 1.18903 1.20620 1.18296 1.21222 0.90462 0.94049 1.51101 0.92845 1.19496 0.95267 0.92284 0.97171 1.20376 0.76885 1.00698 1.06637 1.28832 0.98225 0.95395 0.78621 1.74456 0.96097 1.19645 1.26166 1.74571 1.12620 1.17010 1.09069 1.25781 0.84245 1.01531 0.90641 1.17774 0.86820 1.03202 0.92448 1.22530 1.02692 0.99212 0.91912 1.23233 0.85806 0.93594 1.02228 1.67750 1.28718 1.10760 1.12565 1.23274 0.99566 0.93571 0.88341 1.22406 0.90577 0.98442 1.03351 1.84837 1.16968 1.69682 1.38205 0.92217 0.96175 0.95966 0.86975 0.86471 0.82741 0.78699 0.78436 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 2 C 0.02 0.95 5.47 84.65 0.46 1.41 16 3 Si 0.94 43.33 27.47 68.60 1.88 45.22 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.57 6.54 99.48 0.65 -10.92 16 7 C -0.53 -28.71 9.66 25.60 0.25 -28.46 16 8 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 9 C 0.00 -0.17 4.02 29.85 0.12 -0.05 16 10 C -0.01 -0.27 5.78 29.85 0.17 -0.10 16 11 C 0.20 7.12 7.72 88.31 0.68 7.80 16 12 N -0.32 -12.10 12.22 -165.36 -2.02 -14.12 16 13 N -0.29 -9.92 12.01 -166.31 -2.00 -11.92 16 14 C 0.19 5.67 8.02 87.34 0.70 6.37 16 15 C 0.01 0.17 5.91 -19.89 -0.12 0.05 16 16 C -0.14 -2.57 9.83 22.62 0.22 -2.35 16 17 C 0.11 1.60 11.17 84.61 0.95 2.55 16 18 N -0.49 -8.33 10.34 -196.15 -2.03 -10.36 16 19 C 0.11 1.59 11.17 84.61 0.95 2.54 16 20 C -0.13 -2.32 9.79 22.62 0.22 -2.10 16 21 O -0.22 -7.11 10.76 -7.68 -0.08 -7.19 16 22 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 23 H 0.02 0.93 7.20 -2.38 -0.02 0.91 16 24 H 0.02 0.97 7.57 -2.38 -0.02 0.95 16 25 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 26 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 27 H 0.15 2.47 8.02 -2.91 -0.02 2.45 16 28 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 29 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.16 2.65 7.95 -2.91 -0.02 2.63 16 Total: -1.00 -67.73 275.52 1.76 -65.97 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: 1.10 Total: 1.16 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.60 Total: -12.34 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -5.75 Total: -92.82 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.08 Total: -7.19 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.22 kcal Total: -67.73 1.76 -65.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118362975.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.198 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds