Wall clock time and date at job start Sun Mar 29 2020 23:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38306 * 120.81588 * 2 1 4 4 C 1.39467 * 119.20579 * 179.97438 * 3 2 1 5 5 C 1.47987 * 119.57510 * 179.97438 * 4 3 2 6 6 O 1.21576 * 119.99736 * 6.13273 * 5 4 3 7 7 N 1.34773 * 120.00082 * 186.13600 * 5 4 3 8 8 C 1.46502 * 119.99936 * 185.40188 * 7 5 4 9 9 C 1.36655 * 120.00243 * 5.40461 * 7 5 4 10 10 H 1.08003 * 119.99385 * 40.11695 * 9 7 5 11 11 C 1.39193 * 119.99936 * 220.11586 * 9 7 5 12 12 N 1.31262 * 120.00094 * 9.02591 * 11 9 7 13 13 Si 1.86808 * 119.99936 * 189.02355 * 11 9 7 14 14 H 1.48504 * 109.46907 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46831 * 120.00010 * 13 11 9 16 16 H 1.48491 * 109.47063 * 240.00143 * 13 11 9 17 17 N 1.32885 * 120.85630 * 359.72547 * 4 3 2 18 18 C 1.31326 * 121.79068 * 0.56192 * 17 4 3 19 19 C 1.39927 * 120.70133 * 359.44281 * 18 17 4 20 20 C 1.43199 * 120.45813 * 180.29867 * 19 18 17 21 21 N 3.49287 * 81.49427 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46924 * 270.02032 * 1 2 3 23 23 H 1.08999 * 109.47361 * 30.02427 * 1 2 3 24 24 H 1.08999 * 109.46827 * 150.02242 * 1 2 3 25 25 H 1.08004 * 120.39707 * 359.95177 * 3 2 1 26 26 H 1.08998 * 109.46659 * 84.77622 * 8 7 5 27 27 H 1.08999 * 109.47059 * 204.77256 * 8 7 5 28 28 H 1.09000 * 109.47434 * 324.77722 * 8 7 5 29 29 H 0.97000 * 120.00008 * 179.97438 * 12 11 9 30 30 H 1.07994 * 119.64863 * 179.71227 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.1878 0.0000 4 6 3.6096 1.1486 0.0005 5 6 4.3759 2.4146 0.0000 6 8 3.7950 3.4768 0.1115 7 7 5.7177 2.3902 -0.1243 8 6 6.4870 3.6313 -0.0064 9 6 6.3606 1.2076 -0.3603 10 1 5.9333 0.4875 -1.0424 11 6 7.5662 0.9314 0.2784 12 7 7.9972 1.7190 1.2359 13 14 8.5705 -0.5604 -0.2272 14 1 7.8714 -1.2799 -1.3221 15 1 9.9076 -0.1198 -0.6998 16 1 8.7313 -1.4669 0.9379 17 7 4.2589 -0.0108 0.0065 18 6 3.6230 -1.1599 0.0012 19 6 2.2243 -1.2024 0.0006 20 6 1.5363 -2.4582 0.0012 21 7 0.9904 -3.4545 0.0015 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6954 2.1344 -0.0008 26 1 6.6891 3.8349 1.0452 27 1 7.4295 3.5271 -0.5439 28 1 5.9148 4.4554 -0.4325 29 1 8.8371 1.5262 1.6811 30 1 4.1855 -2.0817 0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136490996.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:04 Heat of formation + Delta-G solvation = 27.536985 kcal Electronic energy + Delta-G solvation = -16971.955552 eV Core-core repulsion = 14153.522250 eV Total energy + Delta-G solvation = -2818.433302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63738 -39.87477 -37.65820 -36.77975 -34.96516 -33.41861 -32.59943 -28.98877 -28.61564 -26.94149 -25.12182 -23.62720 -21.30685 -19.93470 -19.39710 -18.21761 -17.28274 -16.44053 -16.17815 -16.03863 -15.61276 -15.44329 -15.22512 -14.45540 -14.20773 -14.12221 -13.89464 -13.76005 -13.51268 -13.38069 -13.19982 -13.01519 -12.76106 -12.67666 -12.40225 -11.95914 -11.04210 -10.87604 -10.49663 -10.16996 -10.06324 -9.43558 -8.25829 -5.91679 -0.70453 0.28048 1.42296 1.53073 1.53574 1.64107 1.66484 2.26435 2.36560 2.66346 2.84642 2.97525 3.20906 3.53742 3.60128 3.87273 4.09127 4.28115 4.50080 4.70479 4.72510 4.81422 4.87895 4.89999 5.11780 5.17108 5.22062 5.52966 5.65554 5.94319 6.34448 6.51317 6.92217 7.18699 7.50239 7.92064 8.79415 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.008338 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.104170 B = 3357.265809 C = 4478.455325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.011 3.989 3 C -0.132 4.132 4 C 0.123 3.877 5 C 0.474 3.526 6 O -0.631 6.631 7 N -0.422 5.422 8 C 0.120 3.880 9 C -0.303 4.303 10 H 0.117 0.883 11 C 0.000 4.000 12 N -0.900 5.900 13 Si 0.985 3.015 14 H -0.252 1.252 15 H -0.282 1.282 16 H -0.282 1.282 17 N -0.446 5.446 18 C 0.144 3.856 19 C -0.088 4.088 20 C 0.291 3.709 21 N -0.445 5.445 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.156 0.844 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.271 0.729 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 -4.884 -2.938 9.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.001 3.999 3 C -0.153 4.153 4 C -0.014 4.014 5 C 0.264 3.736 6 O -0.520 6.520 7 N -0.136 5.136 8 C -0.023 4.023 9 C -0.432 4.432 10 H 0.134 0.866 11 C -0.203 4.203 12 N -0.538 5.538 13 Si 0.809 3.191 14 H -0.175 1.175 15 H -0.207 1.207 16 H -0.208 1.208 17 N -0.156 5.156 18 C -0.019 4.019 19 C -0.094 4.094 20 C -0.024 4.024 21 N -0.121 5.121 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.093 0.907 25 H 0.174 0.826 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.171 -5.792 -2.765 10.390 hybrid contribution 0.380 0.009 0.190 0.425 sum -7.791 -5.782 -2.575 10.038 Atomic orbital electron populations 1.21008 0.86914 1.04820 1.04719 1.20489 0.98252 0.89816 0.91388 1.21929 0.92738 0.99886 1.00773 1.21357 0.91927 0.92210 0.95913 1.18515 0.83346 0.87906 0.83796 1.90588 1.70394 1.31603 1.59445 1.43717 1.04610 1.08695 1.56559 1.21284 0.94789 0.85689 1.00551 1.20191 1.03710 0.94871 1.24425 0.86596 1.26329 0.99111 1.00719 0.94117 1.69983 1.21852 1.39743 1.22228 0.84977 0.77589 0.77956 0.78579 1.17507 1.20747 1.20808 1.68715 1.38587 0.97589 1.10726 1.23623 0.89608 0.97451 0.91236 1.17086 0.93876 0.87141 1.11319 1.25163 0.92506 0.92064 0.92677 1.81261 1.09333 1.11360 1.10137 0.88325 0.88240 0.90662 0.82647 0.94160 0.91970 0.93198 0.91962 0.79711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.67 71.24 0.69 -1.29 16 2 C 0.01 0.26 5.95 -19.42 -0.12 0.14 16 3 C -0.13 -4.16 9.32 22.58 0.21 -3.95 16 4 C 0.12 4.96 6.62 41.87 0.28 5.24 16 5 C 0.47 23.17 7.61 86.83 0.66 23.83 16 6 O -0.63 -32.58 15.96 -3.95 -0.06 -32.64 16 7 N -0.42 -21.38 2.91 -662.09 -1.93 -23.31 16 8 C 0.12 5.77 8.80 127.77 1.12 6.89 16 9 C -0.30 -14.97 7.37 84.17 0.62 -14.35 16 10 H 0.12 5.54 6.18 -2.91 -0.02 5.52 16 11 C 0.00 0.00 5.14 85.01 0.44 0.44 16 12 N -0.90 -47.13 11.73 21.70 0.25 -46.87 16 13 Si 0.99 38.80 29.56 68.60 2.03 40.83 16 14 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 15 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 17 N -0.45 -17.24 6.48 -183.90 -1.19 -18.44 16 18 C 0.14 4.24 10.92 85.18 0.93 5.17 16 19 C -0.09 -2.24 5.75 -21.20 -0.12 -2.36 16 20 C 0.29 7.20 13.95 88.33 1.23 8.44 16 21 N -0.44 -12.25 18.54 19.00 0.35 -11.90 16 22 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.10 1.36 8.10 -2.39 -0.02 1.35 16 24 H 0.07 1.21 7.18 -2.39 -0.02 1.19 16 25 H 0.16 4.68 7.64 -2.91 -0.02 4.66 16 26 H 0.04 2.04 7.72 -2.39 -0.02 2.02 16 27 H 0.06 2.92 7.70 -2.39 -0.02 2.90 16 28 H 0.05 2.26 7.51 -2.39 -0.02 2.24 16 29 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.19 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -61.71 274.15 6.57 -55.13 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.18 Total: 9.00 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 5.94 Total: 28.20 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -2.51 Total: -100.52 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.06 Total: -32.64 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -61.71 6.57 -55.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136490996.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.672 kcal (2) G-P(sol) polarization free energy of solvation -61.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds