Wall clock time and date at job start Sun Mar 29 2020 22:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 119.99937 * 2 1 4 4 H 1.48501 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46967 * 299.99913 * 3 2 1 6 6 H 1.48495 * 109.47276 * 59.99776 * 3 2 1 7 7 C 1.38951 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00166 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99965 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00210 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99762 * 179.97438 * 10 9 7 13 13 C 1.50706 * 109.47222 * 179.97438 * 12 10 9 14 14 C 1.38541 * 126.21162 * 265.00260 * 13 12 10 15 15 N 1.31486 * 109.00658 * 179.97438 * 14 13 12 16 16 N 1.40040 * 108.91563 * 359.97438 * 15 14 13 17 17 C 1.36529 * 132.43543 * 179.97438 * 16 15 14 18 18 C 1.34934 * 120.66189 * 179.97438 * 17 16 15 19 19 C 1.40473 * 120.43067 * 0.02562 * 18 17 16 20 20 C 1.36056 * 119.59175 * 0.02562 * 19 18 17 21 21 C 1.37140 * 107.44206 * 0.02562 * 16 15 14 22 22 H 0.96993 * 120.00459 * 0.02562 * 1 2 3 23 23 H 0.96999 * 120.00218 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47571 * 59.99817 * 12 10 9 25 25 H 1.09001 * 109.47439 * 299.99372 * 12 10 9 26 26 H 1.08003 * 125.50011 * 359.97438 * 14 13 12 27 27 H 1.07997 * 119.66852 * 0.02562 * 17 16 15 28 28 H 1.08000 * 119.78550 * 179.75136 * 18 17 16 29 29 H 1.07998 * 120.20517 * 179.97438 * 19 18 17 30 30 H 1.08001 * 120.39088 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5579 0.0005 11 8 3.2103 -3.5579 0.0001 12 6 1.2438 -4.8629 0.0011 13 6 2.2231 -6.0085 0.0004 14 6 2.6801 -6.6938 -1.1135 15 7 3.5228 -7.6262 -0.7268 16 7 3.6444 -7.5781 0.6675 17 6 4.3767 -8.3139 1.5542 18 6 4.3137 -8.0585 2.8777 19 6 3.4912 -7.0294 3.3653 20 6 2.7546 -6.2881 2.4941 21 6 2.8323 -6.5683 1.1164 22 1 -0.4850 0.8399 -0.0004 23 1 0.3534 -2.3907 0.0005 24 1 0.6168 -4.9209 -0.8886 25 1 0.6176 -4.9206 0.8914 26 1 2.3909 -6.4945 -2.1349 27 1 5.0135 -9.1077 1.1927 28 1 4.8960 -8.6520 3.5670 29 1 3.4431 -6.8284 4.4253 30 1 2.1182 -5.4936 2.8548 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136559914.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:32 Heat of formation + Delta-G solvation = 65.216957 kcal Electronic energy + Delta-G solvation = -16688.300739 eV Core-core repulsion = 13871.501363 eV Total energy + Delta-G solvation = -2816.799376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.73981 -38.08516 -36.96258 -33.96913 -33.08782 -31.22355 -30.49476 -30.15738 -26.56228 -24.42398 -23.59082 -22.34303 -20.69499 -19.01620 -17.81722 -16.91459 -16.49678 -15.90839 -15.73765 -15.12553 -14.60099 -14.40427 -13.98634 -13.82897 -13.19154 -12.75874 -12.36223 -12.12654 -11.67847 -11.55516 -11.40366 -11.29382 -10.99561 -10.37812 -10.30974 -10.19028 -10.14275 -9.47320 -9.09806 -8.33781 -7.91382 -7.19575 -6.37295 -3.77855 0.94554 1.30702 2.49934 2.99381 3.18739 3.28997 3.36548 3.57820 3.98934 4.22873 4.41251 4.81204 4.86041 5.01806 5.20531 5.23605 5.30687 5.54890 5.64650 5.70294 5.78885 6.06743 6.12641 6.26461 6.45068 6.51669 6.56570 6.88199 7.11336 7.59426 7.81922 8.11673 8.67374 9.23327 9.61028 10.13579 10.80486 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.037393 B = 0.005260 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.613853 B = 5321.925804 C = 5592.006211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.927 3.073 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.443 3.557 11 O -0.587 6.587 12 C -0.053 4.053 13 C -0.201 4.201 14 C 0.087 3.913 15 N -0.328 5.328 16 N -0.278 5.278 17 C 0.106 3.894 18 C -0.168 4.168 19 C -0.100 4.100 20 C -0.093 4.093 21 C 0.109 3.891 22 H 0.270 0.730 23 H 0.392 0.608 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.188 0.812 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.137 0.863 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.894 -14.080 5.115 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.119 0.881 9 N -0.203 5.203 10 C 0.228 3.772 11 O -0.472 6.472 12 C -0.095 4.095 13 C -0.212 4.212 14 C -0.089 4.089 15 N -0.152 5.152 16 N -0.045 5.045 17 C -0.019 4.019 18 C -0.190 4.190 19 C -0.123 4.123 20 C -0.113 4.113 21 C -0.009 4.009 22 H 0.080 0.920 23 H 0.226 0.774 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.205 0.795 27 H 0.179 0.821 28 H 0.167 0.833 29 H 0.155 0.845 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.348 -14.876 4.559 15.915 hybrid contribution -0.633 1.620 0.224 1.753 sum 2.715 -13.256 4.783 14.352 Atomic orbital electron populations 1.69615 1.05880 1.27933 1.51020 1.25230 0.95606 0.99598 0.97527 0.85836 0.79707 0.81338 0.77682 1.19324 1.20778 1.20801 1.19748 0.93341 0.82374 1.47238 0.88053 1.41909 1.09170 1.04587 1.64669 1.19997 0.88375 0.84768 0.84019 1.90526 1.14038 1.87292 1.55323 1.19802 0.95848 0.90554 1.03268 1.19413 1.08283 1.03290 0.90240 1.23600 0.93216 0.92190 0.99889 1.77761 1.25818 1.26686 0.84911 1.46058 1.29109 1.22914 1.06425 1.21348 0.95771 0.96556 0.88265 1.20731 1.03402 1.01367 0.93527 1.21049 0.95861 0.95035 1.00369 1.20662 1.00858 1.00308 0.89437 1.19249 0.95049 0.91909 0.94678 0.92003 0.77424 0.89398 0.89958 0.79474 0.82067 0.83348 0.84549 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 10 C 0.44 10.57 7.78 -10.98 -0.09 10.49 16 11 O -0.59 -16.43 15.61 5.55 0.09 -16.34 16 12 C -0.05 -0.96 6.19 -29.03 -0.18 -1.14 16 13 C -0.20 -3.68 4.68 -104.25 -0.49 -4.17 16 14 C 0.09 1.50 11.87 -17.59 -0.21 1.29 16 15 N -0.33 -5.85 12.66 30.46 0.39 -5.47 16 16 N -0.28 -4.65 3.90 -10.71 -0.04 -4.69 16 17 C 0.11 1.32 11.19 -16.63 -0.19 1.14 16 18 C -0.17 -1.74 9.98 -39.91 -0.40 -2.14 16 19 C -0.10 -1.16 10.07 -39.52 -0.40 -1.56 16 20 C -0.09 -1.38 10.09 -39.40 -0.40 -1.78 16 21 C 0.11 1.92 6.76 -84.27 -0.57 1.35 16 22 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 23 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.19 2.64 8.06 -52.48 -0.42 2.22 16 27 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 275.10 15.07 4.15 4.15 Total: -1.00 -34.62 275.10 -5.73 -40.34 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -2.79 Total: 8.74 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -3.15 Total: -4.54 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 1.01 Total: -48.54 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.62 -5.73 -40.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559914.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.558 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds