Wall clock time and date at job start Sun Mar 29 2020 22:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 110.00133 * 2 1 4 4 C 1.54333 * 109.78155 * 121.16949 * 2 1 3 5 5 H 1.08997 * 110.51825 * 215.81009 * 4 2 1 6 6 O 1.42901 * 110.99771 * 338.95707 * 4 2 1 7 7 C 1.55162 * 103.02217 * 97.49090 * 4 2 1 8 8 C 1.54905 * 101.57925 * 35.31097 * 7 4 2 9 9 N 1.47028 * 109.88179 * 238.90680 * 2 1 3 10 10 C 1.34778 * 125.64852 * 59.55751 * 9 2 1 11 11 O 1.21278 * 119.99748 * 359.71996 * 10 9 2 12 12 C 1.50697 * 120.00209 * 179.71810 * 10 9 2 13 13 S 1.80999 * 109.47181 * 180.02562 * 12 10 9 14 14 C 1.76199 * 99.99825 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00405 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99855 * 179.72221 * 14 13 12 17 17 N 1.31634 * 119.99756 * 0.27728 * 16 14 13 18 18 Si 1.86803 * 120.00005 * 180.27923 * 16 14 13 19 19 H 1.48496 * 109.47187 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 119.99999 * 18 16 14 21 21 H 1.48498 * 109.47018 * 240.00046 * 18 16 14 22 22 H 1.08997 * 109.47368 * 179.64019 * 1 2 3 23 23 H 1.09004 * 109.46804 * 299.63766 * 1 2 3 24 24 H 1.08998 * 109.47141 * 59.63477 * 1 2 3 25 25 H 0.96704 * 114.00062 * 175.23834 * 6 4 2 26 26 H 1.08995 * 111.00381 * 277.23649 * 7 4 2 27 27 H 1.09001 * 110.99997 * 153.38106 * 7 4 2 28 28 H 1.08999 * 110.36854 * 204.15285 * 8 7 4 29 29 H 1.09005 * 110.46032 * 81.87373 * 8 7 4 30 30 H 1.08999 * 109.47278 * 59.99800 * 12 10 9 31 31 H 1.09002 * 109.46837 * 300.00183 * 12 10 9 32 32 H 0.97000 * 119.99219 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2426 5 1 2.9606 -0.2816 1.6196 6 8 1.0539 -0.8093 2.2634 7 6 2.3561 -2.1699 0.6913 8 6 2.8612 -1.8466 -0.7370 9 7 2.0300 -0.7140 -1.1840 10 6 1.7753 -0.3844 -2.4658 11 8 1.0746 0.5728 -2.7179 12 6 2.3611 -1.2052 -3.5856 13 16 1.8408 -0.5148 -5.1758 14 6 2.6454 -1.6341 -6.2732 15 1 3.2399 -2.4445 -5.8779 16 6 2.5100 -1.4782 -7.6458 17 7 1.7849 -0.4908 -8.1276 18 14 3.3565 -2.6696 -8.8092 19 1 4.1055 -3.6820 -8.0223 20 1 2.3380 -3.3492 -9.6492 21 1 4.2997 -1.9241 -9.6809 22 1 -0.3634 -1.0276 -0.0065 23 1 -0.3633 0.5082 0.8933 24 1 -0.3633 0.5195 -0.8867 25 1 1.3095 -1.3339 3.0345 26 1 1.4521 -2.7779 0.6577 27 1 3.1327 -2.6593 1.2789 28 1 2.7176 -2.7048 -1.3934 29 1 3.9125 -1.5595 -0.7134 30 1 2.0108 -2.2341 -3.5037 31 1 3.4490 -1.1855 -3.5198 32 1 1.6906 -0.3817 -9.0868 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140863566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:56 Heat of formation + Delta-G solvation = -84.048386 kcal Electronic energy + Delta-G solvation = -15716.826392 eV Core-core repulsion = 12996.705585 eV Total energy + Delta-G solvation = -2720.120807 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.14907 -37.86271 -35.57685 -32.42873 -31.57315 -30.94727 -28.45258 -25.62241 -25.48263 -23.05329 -21.05166 -18.99709 -17.76851 -17.65478 -16.64796 -15.52633 -15.35320 -14.80521 -14.49858 -14.35598 -14.00403 -13.74603 -13.19267 -12.65445 -12.58616 -12.44913 -11.98291 -11.89241 -11.62424 -11.27154 -11.07081 -11.01156 -10.76730 -10.68038 -10.22375 -9.80318 -9.32386 -9.07327 -8.52326 -8.22531 -6.49969 -6.21688 -3.92225 2.83786 3.07676 3.21543 3.25289 3.30883 3.58535 3.88508 4.20103 4.31664 4.36975 4.75978 4.96633 5.06912 5.13546 5.17804 5.37878 5.45059 5.49682 5.58335 5.64722 5.82384 5.89084 5.92976 6.13115 6.14823 6.44904 6.57576 7.32710 7.59741 7.67989 8.35400 8.57778 9.23673 10.85846 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.052268 B = 0.004947 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.572204 B = 5658.698693 C = 6071.088306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.143 3.857 3 H 0.079 0.921 4 C 0.096 3.904 5 H 0.073 0.927 6 O -0.553 6.553 7 C -0.166 4.166 8 C 0.101 3.899 9 N -0.623 5.623 10 C 0.550 3.450 11 O -0.511 6.511 12 C -0.147 4.147 13 S -0.060 6.060 14 C -0.535 4.535 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.379 0.621 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.078 -4.414 19.467 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.039 3.961 3 H 0.097 0.903 4 C 0.036 3.964 5 H 0.091 0.909 6 O -0.358 6.358 7 C -0.204 4.204 8 C -0.022 4.022 9 N -0.362 5.362 10 C 0.339 3.661 11 O -0.385 6.385 12 C -0.297 4.297 13 S 0.167 5.833 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.226 0.774 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.620 -2.491 18.407 18.645 hybrid contribution 1.797 -2.341 -0.065 2.952 sum 3.417 -4.832 18.342 19.273 Atomic orbital electron populations 1.21854 0.93804 1.02366 1.02659 1.21318 0.96124 0.95458 0.83209 0.90312 1.22757 0.90441 0.94930 0.88244 0.90947 1.86539 1.43131 1.75494 1.30617 1.23514 1.02681 0.97850 0.96375 1.22213 0.94973 0.90094 0.94940 1.48579 1.51922 1.30878 1.04828 1.20007 0.80148 0.84741 0.81220 1.90695 1.37086 1.28197 1.82483 1.23514 1.03715 1.02540 0.99946 1.85413 1.66808 1.40566 0.90549 1.22904 1.36149 1.16154 0.93107 0.90898 1.24995 0.95240 0.95987 0.97349 1.70035 1.37301 1.29359 1.13564 0.86112 0.79060 0.80189 0.80094 1.19631 1.20553 1.20556 0.92782 0.91421 0.91166 0.77391 0.89581 0.89714 0.90009 0.91147 0.89337 0.89311 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.46 37.16 0.31 -1.82 16 2 C 0.14 1.90 3.50 -66.95 -0.23 1.67 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.10 0.88 4.17 -24.89 -0.10 0.78 16 5 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 6 O -0.55 -4.79 11.81 -35.23 -0.42 -5.20 16 7 C -0.17 -1.34 6.81 -24.58 -0.17 -1.50 16 8 C 0.10 1.09 6.69 -2.53 -0.02 1.07 16 9 N -0.62 -9.35 3.08 -163.01 -0.50 -9.85 16 10 C 0.55 10.88 7.65 -10.99 -0.08 10.80 16 11 O -0.51 -12.01 14.75 5.56 0.08 -11.93 16 12 C -0.15 -3.05 5.16 36.00 0.19 -2.87 16 13 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 14 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 15 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 18 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.88 7.54 -51.93 -0.39 0.49 16 24 H 0.07 1.20 6.74 -51.93 -0.35 0.85 16 25 H 0.38 1.50 9.11 45.56 0.42 1.91 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.71 7.85 -51.92 -0.41 1.30 16 31 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 32 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -34.95 283.56 -6.60 -41.55 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.63 Total: -0.93 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.09 Total: -4.90 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.23 Total: -35.41 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.33 Total: -17.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.95 -6.60 -41.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140863566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.503 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds