Wall clock time and date at job start Sun Mar 29 2020 22:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99825 * 2 1 4 4 H 1.48506 * 109.47208 * 270.00537 * 3 2 1 5 5 H 1.48490 * 109.47044 * 30.00476 * 3 2 1 6 6 H 1.48498 * 109.46933 * 150.00458 * 3 2 1 7 7 C 1.37875 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00568 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.46768 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00255 * 359.97438 * 10 9 7 12 12 N 1.34782 * 119.99632 * 180.02562 * 10 9 7 13 13 C 1.40074 * 119.99640 * 185.28328 * 12 10 9 14 14 C 1.40227 * 119.21373 * 214.14705 * 13 12 10 15 15 C 1.35518 * 121.76167 * 179.74477 * 14 13 12 16 16 C 1.41194 * 119.69921 * 0.25188 * 15 14 13 17 17 N 1.32100 * 134.57059 * 180.02562 * 16 15 14 18 18 N 1.39958 * 108.96485 * 179.97438 * 17 16 15 19 19 H 0.96996 * 125.03544 * 179.97438 * 18 17 16 20 20 C 1.34098 * 109.93024 * 0.02562 * 18 17 16 21 21 C 1.38243 * 107.89893 * 359.97438 * 20 18 17 22 22 C 1.36217 * 119.21661 * 34.41536 * 13 12 10 23 23 H 0.97003 * 120.00092 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47232 * 60.00671 * 9 7 2 25 25 H 1.08995 * 109.47280 * 300.00102 * 9 7 2 26 26 H 0.97004 * 119.99870 * 5.27784 * 12 10 9 27 27 H 1.07996 * 119.11407 * 0.02562 * 14 13 12 28 28 H 1.07999 * 120.15337 * 180.27744 * 15 14 13 29 29 H 1.08004 * 126.04843 * 180.02562 * 20 18 17 30 30 H 1.07991 * 120.25946 * 359.96129 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 8 3.4229 -3.4229 -0.0010 12 7 1.7812 -4.9153 -0.0011 13 6 2.6867 -5.9782 0.1106 14 6 2.4211 -7.1774 -0.5659 15 6 3.2639 -8.2365 -0.4981 16 6 4.4417 -8.1448 0.2753 17 7 5.4412 -8.9660 0.5430 18 7 6.3489 -8.3173 1.3881 19 1 7.1682 -8.7079 1.7300 20 6 5.9173 -7.0763 1.6560 21 6 4.7199 -6.8899 0.9908 22 6 3.8013 -5.8243 0.8783 23 1 -0.4850 0.8401 0.0004 24 1 0.6242 -2.5568 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 0.8309 -5.0937 -0.0787 27 1 1.5232 -7.2576 -1.1606 28 1 3.0360 -9.1464 -1.0334 29 1 6.4173 -6.3505 2.2803 30 1 3.9830 -4.8926 1.3933 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143188757.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:47 Heat of formation + Delta-G solvation = 31.158106 kcal Electronic energy + Delta-G solvation = -16420.635041 eV Core-core repulsion = 13602.358763 eV Total energy + Delta-G solvation = -2818.276279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.23048 -40.87341 -38.11150 -35.11288 -35.05529 -32.80968 -31.57806 -31.01521 -28.85990 -26.07066 -25.01079 -22.75575 -21.90064 -21.11108 -19.23670 -18.69549 -18.17191 -17.63004 -17.16530 -16.44733 -16.15113 -15.76770 -15.22313 -14.96973 -14.62029 -14.27169 -14.15336 -13.85702 -13.40955 -13.00339 -12.76939 -12.56084 -12.52405 -12.02800 -11.58369 -11.43425 -11.40812 -10.72242 -10.59865 -10.35629 -9.59568 -8.28480 -8.23158 -6.30223 -0.33516 0.73606 1.42713 1.43039 1.44759 1.55517 1.85951 1.90799 2.30278 2.50217 2.90112 3.12712 3.35112 3.76049 4.17301 4.26246 4.39085 4.48123 4.50854 4.69968 5.07008 5.10280 5.25975 5.27988 5.46852 5.50981 5.55027 5.74330 6.02433 6.09234 6.28447 6.58662 6.70389 6.84937 7.34949 7.48928 8.88769 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043351 B = 0.004734 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.728251 B = 5913.004223 C = 6446.494363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.057 0.943 9 C 0.010 3.990 10 C 0.518 3.482 11 O -0.563 6.563 12 N -0.669 5.669 13 C 0.091 3.909 14 C -0.080 4.080 15 C -0.096 4.096 16 C 0.076 3.924 17 N -0.335 5.335 18 N -0.411 5.411 19 H 0.461 0.539 20 C 0.100 3.900 21 C -0.221 4.221 22 C -0.072 4.072 23 H 0.267 0.733 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.422 0.578 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.226 0.774 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 -16.437 2.907 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.075 0.925 9 C -0.030 4.030 10 C 0.308 3.692 11 O -0.440 6.440 12 N -0.316 5.316 13 C -0.004 4.004 14 C -0.103 4.103 15 C -0.117 4.117 16 C -0.077 4.077 17 N -0.164 5.164 18 N -0.114 5.114 19 H 0.309 0.691 20 C -0.058 4.058 21 C -0.231 4.231 22 C -0.096 4.096 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.260 0.740 27 H 0.179 0.821 28 H 0.175 0.825 29 H 0.243 0.757 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.245 -17.335 2.701 19.385 hybrid contribution -0.109 1.637 0.298 1.668 sum 8.136 -15.698 2.999 17.934 Atomic orbital electron populations 1.70025 1.07109 1.28080 1.51209 1.25755 0.95805 1.02649 0.94532 0.85475 0.78519 0.78728 0.78496 1.19832 1.19988 1.19823 1.21363 0.93737 0.91140 1.51138 0.92518 1.19096 0.94173 0.90439 0.99279 1.21654 0.90197 0.84215 0.73105 1.90524 1.18943 1.85039 1.49544 1.43660 1.10692 1.03932 1.73273 1.17419 0.93781 0.89258 0.99892 1.20736 1.01020 0.90715 0.97845 1.19987 0.91187 1.00264 1.00297 1.21306 0.95769 0.92059 0.98562 1.77513 1.03316 1.19574 1.16015 1.46274 1.20434 1.10010 1.34697 0.69109 1.23237 0.94366 0.88988 0.99193 1.19701 0.99255 0.96327 1.07809 1.20145 0.94338 0.97193 0.97895 0.92403 0.93536 0.93484 0.74007 0.82127 0.82548 0.75748 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 13.29 21.45 0.28 -53.12 16 2 C 0.01 0.64 5.46 84.65 0.46 1.10 16 3 Si 0.96 44.77 29.54 68.60 2.03 46.79 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.54 -31.01 8.92 25.60 0.23 -30.78 16 8 H 0.06 3.45 6.75 -2.91 -0.02 3.43 16 9 C 0.01 0.48 5.46 29.11 0.16 0.64 16 10 C 0.52 23.37 7.52 87.66 0.66 24.03 16 11 O -0.56 -29.08 13.17 -3.05 -0.04 -29.12 16 12 N -0.67 -22.95 5.32 -304.29 -1.62 -24.57 16 13 C 0.09 2.98 6.22 37.84 0.24 3.22 16 14 C -0.08 -2.02 9.78 22.12 0.22 -1.80 16 15 C -0.10 -2.39 10.07 22.37 0.23 -2.17 16 16 C 0.08 2.19 7.49 42.16 0.32 2.50 16 17 N -0.33 -8.82 12.70 -48.67 -0.62 -9.44 16 18 N -0.41 -7.53 7.19 -56.28 -0.40 -7.93 16 19 H 0.46 4.21 8.96 -213.42 -1.91 2.30 16 20 C 0.10 2.04 12.08 84.35 1.02 3.06 16 21 C -0.22 -6.50 6.33 -20.24 -0.13 -6.63 16 22 C -0.07 -2.51 8.66 22.51 0.19 -2.31 16 23 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.42 11.41 8.82 -92.71 -0.82 10.60 16 27 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 28 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.23 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.11 4.43 6.38 -2.92 -0.02 4.41 16 Total: -1.00 -75.63 270.20 1.69 -73.94 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -1.53 Total: 12.58 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 3.59 Total: -9.14 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -2.36 Total: -95.06 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.04 Total: -29.12 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -75.63 1.69 -73.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143188757.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.098 kcal (2) G-P(sol) polarization free energy of solvation -75.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds