Wall clock time and date at job start Sun Mar 29 2020 22:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99567 * 2 1 4 4 H 1.48502 * 109.46937 * 269.99543 * 3 2 1 5 5 H 1.48499 * 109.47251 * 29.99901 * 3 2 1 6 6 H 1.48506 * 109.46799 * 150.00282 * 3 2 1 7 7 C 1.37874 * 120.00565 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00287 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99644 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47079 * 180.02562 * 9 7 2 11 11 O 1.21309 * 119.99707 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99788 * 180.02562 * 10 9 7 13 13 C 1.40705 * 119.99590 * 180.02562 * 12 10 9 14 14 C 1.34764 * 126.49657 * 359.97304 * 13 12 10 15 15 N 1.37148 * 109.79525 * 180.02562 * 14 13 12 16 16 H 0.96997 * 125.08336 * 179.97438 * 15 14 13 17 17 C 1.37611 * 109.82540 * 359.97438 * 15 14 13 18 18 C 1.39243 * 133.60618 * 179.97438 * 17 15 14 19 19 C 1.38288 * 118.29073 * 180.02562 * 18 17 15 20 20 C 1.38697 * 119.67013 * 0.02562 * 19 18 17 21 21 N 1.31514 * 121.27176 * 359.97438 * 20 19 18 22 22 C 1.32984 * 121.41579 * 0.02562 * 21 20 19 23 23 H 0.96998 * 120.00445 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47113 * 60.00613 * 9 7 2 25 25 H 1.08998 * 109.47203 * 300.00384 * 9 7 2 26 26 H 0.96994 * 120.00455 * 359.97438 * 12 10 9 27 27 H 1.07994 * 125.10228 * 0.02562 * 14 13 12 28 28 H 1.07993 * 120.85070 * 0.02562 * 18 17 15 29 29 H 1.08003 * 120.16198 * 180.02562 * 19 18 17 30 30 H 1.07995 * 119.36808 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 8 3.4231 -3.4228 -0.0010 12 7 1.7812 -4.9152 -0.0011 13 6 2.6957 -5.9846 -0.0005 14 6 4.0400 -5.8898 0.0000 15 7 4.5941 -7.1443 -0.0001 16 1 5.5455 -7.3336 -0.0002 17 6 3.5985 -8.0943 -0.0002 18 6 3.5998 -9.4867 -0.0008 19 6 2.3827 -10.1432 -0.0012 20 6 1.2063 -9.4085 -0.0015 21 7 1.2227 -8.0934 -0.0010 22 6 2.3662 -7.4145 -0.0006 23 1 -0.4851 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 0.8276 -5.0926 -0.0011 27 1 4.5972 -4.9647 0.0005 28 1 4.5274 -10.0397 -0.0009 29 1 2.3484 -11.2227 -0.0012 30 1 0.2585 -9.9262 -0.0023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189693.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:12 Heat of formation + Delta-G solvation = 4.566272 kcal Electronic energy + Delta-G solvation = -16439.517627 eV Core-core repulsion = 13620.088239 eV Total energy + Delta-G solvation = -2819.429387 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.57097 -40.52278 -38.61711 -35.73319 -35.10929 -33.29477 -31.36862 -30.58949 -29.35239 -25.85680 -24.60546 -23.64618 -22.49308 -20.71444 -19.31607 -18.53750 -18.25069 -17.25101 -16.90322 -16.60333 -16.40942 -16.01498 -15.63878 -15.37356 -14.67216 -14.22160 -14.04921 -13.73356 -13.54450 -13.31094 -13.20519 -12.78563 -12.62838 -12.09339 -12.03109 -11.45861 -10.69145 -10.65339 -10.61489 -10.26780 -9.38776 -8.44828 -8.24488 -6.32513 0.04823 0.43344 1.33709 1.42109 1.43300 1.55498 1.93397 2.09206 2.34008 2.49316 2.99094 3.11357 3.23289 3.80180 4.02904 4.08533 4.19143 4.40193 4.66042 4.74104 4.76724 5.03014 5.10371 5.22160 5.23265 5.53185 5.67181 5.76938 5.97537 6.03140 6.55264 6.65518 6.81795 7.11584 7.29890 7.40649 8.88018 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.054639 B = 0.004579 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.330522 B = 6112.800343 C = 6609.986927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.012 3.988 10 C 0.518 3.482 11 O -0.559 6.559 12 N -0.640 5.640 13 C 0.038 3.962 14 C 0.035 3.965 15 N -0.567 5.567 16 H 0.438 0.562 17 C 0.051 3.949 18 C -0.083 4.083 19 C -0.141 4.141 20 C 0.076 3.924 21 N -0.484 5.484 22 C 0.044 3.956 23 H 0.267 0.733 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.419 0.581 27 H 0.191 0.809 28 H 0.171 0.829 29 H 0.182 0.818 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -21.642 -0.013 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.080 0.920 9 C -0.028 4.028 10 C 0.309 3.691 11 O -0.438 6.438 12 N -0.284 5.284 13 C -0.063 4.063 14 C -0.096 4.096 15 N -0.175 5.175 16 H 0.279 0.721 17 C -0.060 4.060 18 C -0.111 4.111 19 C -0.162 4.162 20 C -0.092 4.092 21 N -0.193 5.193 22 C -0.089 4.089 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.255 0.745 27 H 0.208 0.792 28 H 0.189 0.811 29 H 0.200 0.800 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.515 -20.737 -0.010 21.736 hybrid contribution 0.664 0.613 -0.006 0.904 sum 7.180 -20.125 -0.015 21.367 Atomic orbital electron populations 1.70043 1.07308 1.28170 1.51094 1.25831 0.95832 1.02911 0.94427 0.85397 0.78475 0.78318 0.78546 1.19693 1.20084 1.19566 1.21358 0.93898 0.90765 1.51307 0.91965 1.19063 0.94134 0.90485 0.99077 1.21638 0.90378 0.83453 0.73629 1.90348 1.18393 1.84582 1.50442 1.43182 1.09840 1.03303 1.72080 1.18060 0.90069 0.85301 1.12889 1.22266 0.92363 0.89099 1.05875 1.41496 1.08662 1.02941 1.64365 0.72106 1.19246 0.88595 0.92824 1.05372 1.20986 1.01310 0.88423 1.00421 1.22326 0.91238 1.03053 0.99548 1.23218 1.00598 0.87814 0.97572 1.66963 1.28840 1.11094 1.12377 1.19642 0.89693 0.91648 1.07941 0.92376 0.93823 0.93830 0.74495 0.79197 0.81122 0.80025 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -31.54 8.92 25.60 0.23 -31.31 16 8 H 0.06 3.78 6.75 -2.92 -0.02 3.76 16 9 C 0.01 0.63 5.46 29.10 0.16 0.79 16 10 C 0.52 24.65 7.79 87.66 0.68 25.34 16 11 O -0.56 -28.48 12.63 -3.12 -0.04 -28.52 16 12 N -0.64 -25.76 5.47 -299.41 -1.64 -27.40 16 13 C 0.04 1.42 7.20 39.14 0.28 1.70 16 14 C 0.03 1.16 10.76 83.06 0.89 2.06 16 15 N -0.57 -13.50 6.08 -186.91 -1.14 -14.64 16 16 H 0.44 6.65 8.96 -92.71 -0.83 5.82 16 17 C 0.05 1.28 7.28 39.09 0.28 1.57 16 18 C -0.08 -1.36 10.19 22.52 0.23 -1.13 16 19 C -0.14 -2.03 10.09 22.39 0.23 -1.80 16 20 C 0.08 1.55 11.16 84.85 0.95 2.49 16 21 N -0.48 -14.67 10.41 -184.85 -1.93 -16.60 16 22 C 0.04 1.44 7.52 41.80 0.31 1.75 16 23 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 24 H 0.04 2.35 8.14 -2.38 -0.02 2.33 16 25 H 0.04 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.42 15.40 8.83 -92.71 -0.82 14.59 16 27 H 0.19 6.90 5.77 -2.91 -0.02 6.88 16 28 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -74.33 269.66 1.84 -72.49 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -0.44 Total: 19.54 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 4.71 Total: 2.41 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -4.42 Total: -113.24 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.04 Total: -28.52 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.33 1.84 -72.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189693.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.059 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds