Wall clock time and date at job start Sun Mar 29 2020 23:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36812 * 119.99626 * 2 1 4 4 H 1.08004 * 119.99550 * 148.64034 * 3 2 1 5 5 C 1.39056 * 120.00319 * 328.36424 * 3 2 1 6 6 N 1.31357 * 119.99996 * 161.67526 * 5 3 2 7 7 Si 1.86805 * 120.00161 * 341.67501 * 5 3 2 8 8 H 1.48504 * 109.46736 * 95.16406 * 7 5 3 9 9 H 1.48495 * 109.47310 * 215.16702 * 7 5 3 10 10 H 1.48503 * 109.46827 * 335.16847 * 7 5 3 11 11 C 1.34769 * 120.00281 * 180.02562 * 2 1 3 12 12 O 1.21700 * 120.00359 * 183.59155 * 11 2 1 13 13 C 1.46907 * 119.99772 * 3.59322 * 11 2 1 14 14 C 1.36055 * 125.43086 * 174.54287 * 13 11 2 15 15 C 1.41393 * 107.66658 * 179.90293 * 14 13 11 16 16 C 1.39870 * 134.33300 * 180.02562 * 15 14 13 17 17 N 1.31564 * 120.03658 * 180.29138 * 16 15 14 18 18 C 1.32363 * 122.32015 * 0.02562 * 17 16 15 19 19 C 1.36659 * 121.64867 * 0.02562 * 18 17 16 20 20 C 1.39412 * 119.01963 * 359.97438 * 19 18 17 21 21 N 1.36924 * 134.31476 * 179.97438 * 20 19 18 22 22 H 0.96999 * 125.58574 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.47398 * 117.99274 * 1 2 3 24 24 H 1.08998 * 109.46773 * 237.98923 * 1 2 3 25 25 H 1.09000 * 109.46920 * 357.98503 * 1 2 3 26 26 H 0.97002 * 119.99948 * 180.02562 * 6 5 3 27 27 H 1.07997 * 126.16726 * 0.02587 * 14 13 11 28 28 H 1.08000 * 119.98369 * 0.29301 * 16 15 14 29 29 H 1.08001 * 119.17107 * 180.02562 * 18 17 16 30 30 H 1.07998 * 120.49587 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1849 0.0000 4 1 3.1107 1.2532 0.4868 5 6 1.6087 2.2997 -0.6316 6 7 2.0567 3.5001 -0.3422 7 14 0.2456 2.0902 -1.8918 8 1 -1.0717 2.2711 -1.2306 9 1 0.4041 3.1037 -2.9654 10 1 0.3211 0.7291 -2.4808 11 6 2.1389 -1.1671 -0.0005 12 8 3.3541 -1.1682 0.0655 13 6 1.4065 -2.4381 -0.0808 14 6 1.9738 -3.6694 -0.1948 15 6 0.9289 -4.6209 -0.2386 16 6 0.8798 -6.0146 -0.3465 17 7 -0.2812 -6.6331 -0.3665 18 6 -1.4311 -5.9824 -0.2879 19 6 -1.4787 -4.6208 -0.1812 20 6 -0.2843 -3.9024 -0.1542 21 7 0.0306 -2.5732 -0.0592 22 1 -0.6070 -1.8458 0.0125 23 1 -0.3634 -0.4823 -0.9074 24 1 -0.3633 -0.5447 0.8714 25 1 -0.3633 1.0270 0.0361 26 1 1.6795 4.2777 -0.7826 27 1 3.0317 -3.8820 -0.2413 28 1 1.7955 -6.5833 -0.4134 29 1 -2.3549 -6.5415 -0.3086 30 1 -2.4275 -4.1088 -0.1187 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151970092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:38 Heat of formation + Delta-G solvation = 68.292058 kcal Electronic energy + Delta-G solvation = -17096.992290 eV Core-core repulsion = 14280.326260 eV Total energy + Delta-G solvation = -2816.666030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.68698 -39.04142 -37.44325 -35.32490 -32.50337 -32.16010 -30.57952 -29.07644 -27.12445 -25.87987 -23.52255 -22.51814 -21.09932 -19.74622 -17.94712 -17.36815 -17.06711 -15.90218 -15.46982 -15.19016 -14.95014 -14.46796 -14.22108 -13.83967 -13.60707 -13.07781 -12.90294 -12.77239 -12.63023 -12.30152 -12.00657 -11.35822 -10.88418 -10.66238 -10.14528 -9.95028 -9.49259 -9.48120 -9.03017 -8.67266 -8.16590 -7.75165 -6.64641 -4.17968 0.81893 1.64360 2.35670 2.82427 3.01884 3.04523 3.06444 3.86789 3.89591 4.03149 4.09195 4.56652 4.67736 4.72840 5.05002 5.08111 5.18047 5.25680 5.44284 5.48465 5.57719 5.75334 5.84090 6.00930 6.16316 6.56173 6.72003 6.95009 7.23641 7.42939 7.94412 8.14953 8.21378 8.64904 9.00260 9.40611 10.46227 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040062 B = 0.006534 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.740722 B = 4284.129613 C = 4790.616450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.451 5.451 3 C -0.316 4.316 4 H 0.118 0.882 5 C 0.057 3.943 6 N -0.851 5.851 7 Si 0.879 3.121 8 H -0.274 1.274 9 H -0.282 1.282 10 H -0.264 1.264 11 C 0.512 3.488 12 O -0.544 6.544 13 C 0.058 3.942 14 C -0.127 4.127 15 C -0.162 4.162 16 C 0.165 3.835 17 N -0.510 5.510 18 C 0.090 3.910 19 C -0.178 4.178 20 C 0.119 3.881 21 N -0.580 5.580 22 H 0.423 0.577 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.094 0.906 26 H 0.279 0.721 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.310 -11.805 -0.545 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.171 5.171 3 C -0.443 4.443 4 H 0.135 0.865 5 C -0.150 4.150 6 N -0.487 5.487 7 Si 0.706 3.294 8 H -0.201 1.201 9 H -0.208 1.208 10 H -0.188 1.188 11 C 0.301 3.699 12 O -0.425 6.425 13 C -0.052 4.052 14 C -0.155 4.155 15 C -0.170 4.170 16 C -0.002 4.002 17 N -0.220 5.220 18 C -0.059 4.059 19 C -0.201 4.201 20 C 0.001 3.999 21 N -0.193 5.193 22 H 0.271 0.729 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.176 0.824 28 H 0.175 0.825 29 H 0.169 0.831 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.875 -12.240 -0.587 15.130 hybrid contribution -1.277 1.491 -0.607 2.055 sum -10.152 -10.749 -1.193 14.834 Atomic orbital electron populations 1.22410 0.84538 1.04318 0.99521 1.43582 1.03491 1.06158 1.63899 1.19239 1.06451 0.83762 1.34868 0.86452 1.25392 0.98033 0.94784 0.96785 1.69673 1.41762 0.97907 1.39329 0.86997 0.81120 0.79110 0.82160 1.20069 1.20804 1.18826 1.16999 0.86962 0.81358 0.84588 1.90735 1.12153 1.85624 1.53999 1.21032 0.81258 0.96799 1.06144 1.20745 0.99124 0.88970 1.06635 1.19262 0.93322 0.95222 1.09179 1.22430 0.96001 0.89317 0.92418 1.67602 0.98135 1.40510 1.15779 1.21943 0.96216 0.90554 0.97145 1.20734 0.95706 0.95181 1.08466 1.18515 0.95558 0.84593 1.01226 1.43370 1.07323 1.06432 1.62197 0.72928 0.92768 0.92235 0.88748 0.91059 0.82436 0.82466 0.83050 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 6.30 59.85 0.38 1.03 16 2 N -0.45 -10.50 2.70 -123.62 -0.33 -10.83 16 3 C -0.32 -8.54 9.55 -15.03 -0.14 -8.68 16 4 H 0.12 3.57 7.75 -52.48 -0.41 3.17 16 5 C 0.06 1.50 5.23 -17.45 -0.09 1.40 16 6 N -0.85 -23.31 13.95 55.50 0.77 -22.53 16 7 Si 0.88 19.00 24.41 -169.99 -4.15 14.85 16 8 H -0.27 -5.38 6.76 56.52 0.38 -4.99 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 11 C 0.51 11.89 7.60 -12.76 -0.10 11.79 16 12 O -0.54 -14.48 16.62 5.19 0.09 -14.39 16 13 C 0.06 1.09 6.73 -82.24 -0.55 0.54 16 14 C -0.13 -2.19 10.54 -39.17 -0.41 -2.60 16 15 C -0.16 -2.52 6.21 -106.94 -0.66 -3.18 16 16 C 0.17 2.26 11.29 -17.06 -0.19 2.06 16 17 N -0.51 -7.07 10.33 -13.17 -0.14 -7.21 16 18 C 0.09 1.08 11.09 -17.89 -0.20 0.88 16 19 C -0.18 -2.19 10.09 -39.72 -0.40 -2.59 16 20 C 0.12 1.78 7.32 -84.01 -0.62 1.17 16 21 N -0.58 -9.17 5.28 -7.31 -0.04 -9.21 16 22 H 0.42 5.83 4.35 -40.82 -0.18 5.65 16 23 H 0.05 0.89 5.90 -51.93 -0.31 0.58 16 24 H 0.06 0.89 6.63 -51.93 -0.34 0.54 16 25 H 0.09 1.76 4.48 -51.93 -0.23 1.53 16 26 H 0.28 7.00 8.31 -40.82 -0.34 6.67 16 27 H 0.16 2.53 8.06 -52.49 -0.42 2.10 16 28 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 255.30 15.07 3.85 3.85 Total: -1.00 -31.21 255.30 -5.29 -36.50 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -2.34 Total: 7.16 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.99 Total: 1.83 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.27 Total: -49.78 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.15 Total: 14.85 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.21 -5.29 -36.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151970092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.791 kcal (2) G-P(sol) polarization free energy of solvation -31.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds