Wall clock time and date at job start Sun Mar 29 2020 23:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36812 * 119.99626 * 2 1 4 4 H 1.08004 * 119.99550 * 148.64034 * 3 2 1 5 5 C 1.39056 * 120.00319 * 328.36424 * 3 2 1 6 6 N 1.31357 * 119.99996 * 161.67526 * 5 3 2 7 7 Si 1.86805 * 120.00161 * 341.67501 * 5 3 2 8 8 H 1.48504 * 109.46736 * 95.16406 * 7 5 3 9 9 H 1.48495 * 109.47310 * 215.16702 * 7 5 3 10 10 H 1.48503 * 109.46827 * 335.16847 * 7 5 3 11 11 C 1.34769 * 120.00281 * 180.02562 * 2 1 3 12 12 O 1.21700 * 120.00359 * 183.59155 * 11 2 1 13 13 C 1.46907 * 119.99772 * 3.59322 * 11 2 1 14 14 C 1.36055 * 125.43086 * 174.54287 * 13 11 2 15 15 C 1.41393 * 107.66658 * 179.90293 * 14 13 11 16 16 C 1.39870 * 134.33300 * 180.02562 * 15 14 13 17 17 N 1.31564 * 120.03658 * 180.29138 * 16 15 14 18 18 C 1.32363 * 122.32015 * 0.02562 * 17 16 15 19 19 C 1.36659 * 121.64867 * 0.02562 * 18 17 16 20 20 C 1.39412 * 119.01963 * 359.97438 * 19 18 17 21 21 N 1.36924 * 134.31476 * 179.97438 * 20 19 18 22 22 H 0.96999 * 125.58574 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.47398 * 117.99274 * 1 2 3 24 24 H 1.08998 * 109.46773 * 237.98923 * 1 2 3 25 25 H 1.09000 * 109.46920 * 357.98503 * 1 2 3 26 26 H 0.97002 * 119.99948 * 180.02562 * 6 5 3 27 27 H 1.07997 * 126.16726 * 0.02587 * 14 13 11 28 28 H 1.08000 * 119.98369 * 0.29301 * 16 15 14 29 29 H 1.08001 * 119.17107 * 180.02562 * 18 17 16 30 30 H 1.07998 * 120.49587 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1849 0.0000 4 1 3.1107 1.2532 0.4868 5 6 1.6087 2.2997 -0.6316 6 7 2.0567 3.5001 -0.3422 7 14 0.2456 2.0902 -1.8918 8 1 -1.0717 2.2711 -1.2306 9 1 0.4041 3.1037 -2.9654 10 1 0.3211 0.7291 -2.4808 11 6 2.1389 -1.1671 -0.0005 12 8 3.3541 -1.1682 0.0655 13 6 1.4065 -2.4381 -0.0808 14 6 1.9738 -3.6694 -0.1948 15 6 0.9289 -4.6209 -0.2386 16 6 0.8798 -6.0146 -0.3465 17 7 -0.2812 -6.6331 -0.3665 18 6 -1.4311 -5.9824 -0.2879 19 6 -1.4787 -4.6208 -0.1812 20 6 -0.2843 -3.9024 -0.1542 21 7 0.0306 -2.5732 -0.0592 22 1 -0.6070 -1.8458 0.0125 23 1 -0.3634 -0.4823 -0.9074 24 1 -0.3633 -0.5447 0.8714 25 1 -0.3633 1.0270 0.0361 26 1 1.6795 4.2777 -0.7826 27 1 3.0317 -3.8820 -0.2413 28 1 1.7955 -6.5833 -0.4134 29 1 -2.3549 -6.5415 -0.3086 30 1 -2.4275 -4.1088 -0.1187 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151970092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:38 Heat of formation + Delta-G solvation = 45.494675 kcal Electronic energy + Delta-G solvation = -17097.980859 eV Core-core repulsion = 14280.326260 eV Total energy + Delta-G solvation = -2817.654598 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.91666 -40.60455 -38.71897 -37.14879 -34.37032 -33.36038 -31.79812 -30.33117 -28.69256 -27.58119 -24.90794 -23.65581 -22.42280 -21.19458 -19.53759 -18.87788 -18.59811 -17.61119 -16.74054 -16.53991 -16.21677 -15.80890 -15.53764 -15.33177 -14.86688 -14.64390 -14.50533 -14.26322 -14.04379 -13.65538 -13.62920 -12.67066 -12.46144 -12.31520 -11.90916 -11.34626 -11.08593 -10.88260 -10.50507 -10.03768 -9.84005 -8.96097 -8.62491 -6.24704 -0.34106 0.55410 0.99276 1.14584 1.31679 1.37691 1.81588 2.06239 2.24481 2.43705 2.86816 2.99348 3.52225 3.61704 3.70740 3.82998 3.99408 4.09725 4.13970 4.31381 4.35319 4.58592 4.77250 4.92394 5.03308 5.28512 5.42984 5.54446 5.84416 5.88073 6.25977 6.36127 6.70012 7.04416 7.14119 7.55893 8.53679 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040062 B = 0.006534 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.740722 B = 4284.129613 C = 4790.616450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.464 5.464 3 C -0.343 4.343 4 H 0.056 0.944 5 C 0.012 3.988 6 N -0.901 5.901 7 Si 0.952 3.048 8 H -0.230 1.230 9 H -0.286 1.286 10 H -0.258 1.258 11 C 0.512 3.488 12 O -0.597 6.597 13 C 0.025 3.975 14 C -0.112 4.112 15 C -0.186 4.186 16 C 0.171 3.829 17 N -0.525 5.525 18 C 0.097 3.903 19 C -0.176 4.176 20 C 0.119 3.881 21 N -0.571 5.571 22 H 0.431 0.569 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.285 0.715 27 H 0.158 0.842 28 H 0.181 0.819 29 H 0.189 0.811 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.336 -14.306 -1.500 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.183 5.183 3 C -0.470 4.470 4 H 0.074 0.926 5 C -0.191 4.191 6 N -0.537 5.537 7 Si 0.773 3.227 8 H -0.154 1.154 9 H -0.213 1.213 10 H -0.182 1.182 11 C 0.302 3.698 12 O -0.481 6.481 13 C -0.084 4.084 14 C -0.140 4.140 15 C -0.193 4.193 16 C 0.004 3.996 17 N -0.235 5.235 18 C -0.051 4.051 19 C -0.199 4.199 20 C 0.001 3.999 21 N -0.185 5.185 22 H 0.281 0.719 23 H 0.098 0.902 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.176 0.824 28 H 0.198 0.802 29 H 0.206 0.794 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.954 -14.739 -1.517 19.681 hybrid contribution -0.003 2.023 -0.245 2.037 sum -12.957 -12.716 -1.762 18.240 Atomic orbital electron populations 1.22651 0.81050 1.05149 1.02401 1.43597 1.05683 1.04827 1.64241 1.18796 1.05565 0.86202 1.36459 0.92613 1.26222 1.01195 0.93622 0.98076 1.69792 1.44171 0.99021 1.40712 0.85876 0.79302 0.78929 0.78571 1.15365 1.21272 1.18228 1.17593 0.86748 0.82762 0.82663 1.90683 1.14685 1.86843 1.55936 1.20252 0.82900 0.94855 1.10435 1.20931 0.99807 0.89097 1.04172 1.19357 0.92975 0.96029 1.10982 1.22812 0.97133 0.88671 0.91007 1.67724 0.98687 1.40908 1.16144 1.22641 0.96946 0.90892 0.94583 1.21121 0.96071 0.95191 1.07475 1.18894 0.96527 0.84001 1.00428 1.43109 1.05886 1.07229 1.62310 0.71936 0.90208 0.88838 0.88956 0.90455 0.82423 0.80229 0.79396 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 6.30 127.77 0.81 1.82 16 2 N -0.46 -22.06 2.70 -663.24 -1.79 -23.85 16 3 C -0.34 -19.63 9.55 84.11 0.80 -18.82 16 4 H 0.06 3.76 7.75 -2.91 -0.02 3.74 16 5 C 0.01 0.66 5.23 84.96 0.44 1.11 16 6 N -0.90 -51.40 13.95 21.68 0.30 -51.09 16 7 Si 0.95 38.45 24.41 68.60 1.67 40.12 16 8 H -0.23 -7.68 6.76 99.48 0.67 -7.01 16 9 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.26 -10.12 6.54 99.48 0.65 -9.47 16 11 C 0.51 24.60 7.60 86.51 0.66 25.26 16 12 O -0.60 -33.94 16.62 -4.35 -0.07 -34.01 16 13 C 0.03 0.94 6.73 39.89 0.27 1.21 16 14 C -0.11 -3.77 10.54 22.54 0.24 -3.53 16 15 C -0.19 -5.32 6.21 -21.37 -0.13 -5.46 16 16 C 0.17 4.13 11.29 85.13 0.96 5.09 16 17 N -0.52 -12.39 10.33 -195.58 -2.02 -14.41 16 18 C 0.10 1.84 11.09 84.24 0.93 2.77 16 19 C -0.18 -3.42 10.09 22.18 0.22 -3.19 16 20 C 0.12 3.16 7.32 39.37 0.29 3.44 16 21 N -0.57 -16.50 5.28 -177.04 -0.93 -17.44 16 22 H 0.43 10.33 4.35 -92.71 -0.40 9.93 16 23 H 0.08 2.32 5.90 -2.39 -0.01 2.30 16 24 H 0.09 2.52 6.63 -2.39 -0.02 2.50 16 25 H 0.09 3.18 4.48 -2.39 -0.01 3.17 16 26 H 0.29 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 28 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -73.63 255.30 3.35 -70.28 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.70 Total: 20.69 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 5.49 Total: 9.70 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -4.45 Total: -106.79 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.07 Total: -34.01 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.67 Total: 40.12 kcal Total: -73.63 3.35 -70.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151970092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.774 kcal (2) G-P(sol) polarization free energy of solvation -73.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds