Wall clock time and date at job start Sun Mar 29 2020 23:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36924 * 120.00054 * 2 1 4 4 H 1.08001 * 120.00252 * 150.15037 * 3 2 1 5 5 C 1.38928 * 119.99887 * 330.14795 * 3 2 1 6 6 N 1.31459 * 119.99809 * 161.11638 * 5 3 2 7 7 Si 1.86795 * 120.00052 * 341.11283 * 5 3 2 8 8 H 1.48504 * 109.47000 * 90.97550 * 7 5 3 9 9 H 1.48495 * 109.47400 * 210.97388 * 7 5 3 10 10 H 1.48507 * 109.47454 * 330.97562 * 7 5 3 11 11 C 1.34779 * 119.99626 * 179.97438 * 2 1 3 12 12 O 1.21828 * 119.99712 * 185.02043 * 11 2 1 13 13 C 1.46158 * 120.00537 * 5.02053 * 11 2 1 14 14 N 1.34902 * 126.50465 * 357.28988 * 13 11 2 15 15 C 1.30187 * 109.74214 * 180.02562 * 14 13 11 16 16 N 1.36272 * 109.84902 * 0.02562 * 15 14 13 17 17 C 1.36519 * 132.78179 * 180.02562 * 16 15 14 18 18 C 1.35076 * 120.59512 * 180.02562 * 17 16 15 19 19 C 1.40342 * 120.43415 * 359.94984 * 18 17 16 20 20 C 1.36413 * 119.55139 * 0.02562 * 19 18 17 21 21 C 1.37286 * 107.18931 * 359.97438 * 16 15 14 22 22 H 1.09000 * 109.47200 * 235.48986 * 1 2 3 23 23 H 1.09000 * 109.47147 * 355.49503 * 1 2 3 24 24 H 1.09000 * 109.47119 * 115.48948 * 1 2 3 25 25 H 0.96994 * 119.99615 * 179.97438 * 6 5 3 26 26 H 1.08005 * 125.07616 * 179.97438 * 15 14 13 27 27 H 1.08002 * 119.69829 * 0.02562 * 17 16 15 28 28 H 1.08008 * 119.77815 * 179.97438 * 18 17 16 29 29 H 1.08001 * 120.22293 * 180.02562 * 19 18 17 30 30 H 1.07993 * 120.40188 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1222 1.2479 0.4655 5 6 1.5933 2.3091 -0.5989 6 7 2.0422 3.5066 -0.2946 7 14 0.2074 2.1179 -1.8366 8 1 -1.0981 2.1789 -1.1313 9 1 0.2816 3.2136 -2.8361 10 1 0.3366 0.8091 -2.5263 11 6 2.1388 -1.1673 0.0005 12 8 3.3536 -1.1693 0.0929 13 6 1.4123 -2.4307 -0.1097 14 7 0.0732 -2.5840 -0.1668 15 6 -0.2209 -3.8487 -0.2614 16 7 0.9223 -4.5903 -0.2703 17 6 1.1561 -5.9328 -0.3518 18 6 2.4186 -6.4129 -0.3384 19 6 3.5111 -5.5373 -0.2413 20 6 3.2912 -4.1935 -0.1597 21 6 1.9750 -3.7141 -0.1752 22 1 -0.3633 -0.5822 0.8468 23 1 -0.3633 1.0245 0.0807 24 1 -0.3633 -0.4422 -0.9276 25 1 1.6540 4.2908 -0.7130 26 1 -1.2216 -4.2503 -0.3228 27 1 0.3241 -6.6172 -0.4277 28 1 2.5884 -7.4775 -0.4032 29 1 4.5192 -5.9248 -0.2313 30 1 4.1217 -3.5073 -0.0849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153037439.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:07 Heat of formation + Delta-G solvation = 56.101613 kcal Electronic energy + Delta-G solvation = -17260.705925 eV Core-core repulsion = 14443.511278 eV Total energy + Delta-G solvation = -2817.194647 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.74027 -40.28714 -38.30051 -36.76500 -34.40376 -34.00362 -31.84722 -29.63599 -28.19079 -27.06907 -24.82023 -24.04808 -23.21330 -20.80182 -19.18883 -18.74000 -17.82393 -17.37689 -17.06952 -16.92739 -16.53712 -15.99009 -15.63449 -15.25255 -14.97581 -14.47230 -14.23399 -13.97721 -13.68474 -13.15672 -12.95426 -12.55983 -12.52074 -12.27309 -11.82357 -11.64962 -11.29276 -11.18004 -10.57217 -10.35252 -9.81059 -8.54900 -8.49745 -6.11260 -0.27932 0.17938 1.18654 1.27490 1.43269 1.50235 1.60218 2.15630 2.37434 2.58677 2.76117 3.04860 3.51719 3.54527 3.88613 3.92915 4.01656 4.23918 4.31692 4.39048 4.67907 4.80863 4.84161 4.87232 5.17264 5.29137 5.34254 5.53123 5.60530 5.96551 6.24814 6.49987 6.72827 6.90687 7.25626 7.84027 8.62161 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.041099 B = 0.006967 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.124664 B = 4017.777597 C = 4491.780747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.469 5.469 3 C -0.336 4.336 4 H 0.053 0.947 5 C 0.009 3.991 6 N -0.909 5.909 7 Si 0.960 3.040 8 H -0.238 1.238 9 H -0.282 1.282 10 H -0.270 1.270 11 C 0.531 3.469 12 O -0.621 6.621 13 C -0.099 4.099 14 N -0.450 5.450 15 C 0.151 3.849 16 N -0.368 5.368 17 C 0.059 3.941 18 C -0.137 4.137 19 C -0.084 4.084 20 C -0.123 4.123 21 C 0.064 3.936 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.283 0.717 26 H 0.269 0.731 27 H 0.223 0.777 28 H 0.200 0.800 29 H 0.168 0.832 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.128 -24.622 -2.292 26.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.188 5.188 3 C -0.464 4.464 4 H 0.071 0.929 5 C -0.193 4.193 6 N -0.546 5.546 7 Si 0.783 3.217 8 H -0.162 1.162 9 H -0.208 1.208 10 H -0.195 1.195 11 C 0.323 3.677 12 O -0.508 6.508 13 C -0.231 4.231 14 N -0.165 5.165 15 C -0.126 4.126 16 N -0.039 5.039 17 C -0.062 4.062 18 C -0.157 4.157 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.050 4.050 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.285 0.715 27 H 0.239 0.761 28 H 0.217 0.783 29 H 0.186 0.814 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.294 -23.694 -2.227 25.203 hybrid contribution 0.632 0.403 -0.305 0.809 sum -7.662 -23.292 -2.532 24.650 Atomic orbital electron populations 1.22091 0.79664 1.01240 1.03030 1.43587 1.06304 1.04516 1.64415 1.18835 1.04094 0.86238 1.37264 0.92879 1.26123 1.01270 0.93660 0.98197 1.69850 1.44581 0.98604 1.41614 0.85781 0.79361 0.77867 0.78676 1.16229 1.20842 1.19478 1.17113 0.86131 0.83017 0.81473 1.90591 1.15096 1.87666 1.57464 1.20303 0.90190 0.92007 1.20571 1.70140 1.12873 1.18553 1.14971 1.26118 0.92556 0.84703 1.09208 1.43258 1.07573 1.07514 1.45531 1.22770 1.01849 0.80754 1.00798 1.21496 0.89849 1.03113 1.01227 1.21686 1.02352 0.90911 0.95607 1.20723 0.93135 0.97924 1.02476 1.19316 0.90302 0.89660 1.05735 0.90336 0.91802 0.91449 0.90734 0.71525 0.76064 0.78256 0.81426 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.87 6.72 127.77 0.86 4.72 16 2 N -0.47 -27.09 2.73 -663.96 -1.82 -28.90 16 3 C -0.34 -21.96 9.59 84.06 0.81 -21.15 16 4 H 0.05 3.96 7.70 -2.91 -0.02 3.94 16 5 C 0.01 0.57 5.23 84.91 0.44 1.01 16 6 N -0.91 -57.04 13.96 21.66 0.30 -56.74 16 7 Si 0.96 46.07 24.33 68.60 1.67 47.73 16 8 H -0.24 -10.01 6.57 99.48 0.65 -9.36 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.27 -13.13 6.74 99.48 0.67 -12.46 16 11 C 0.53 30.26 7.58 86.30 0.65 30.92 16 12 O -0.62 -39.27 15.52 -4.76 -0.07 -39.35 16 13 C -0.10 -4.49 6.80 41.23 0.28 -4.21 16 14 N -0.45 -16.73 7.80 -187.21 -1.46 -18.19 16 15 C 0.15 3.72 12.73 179.96 2.29 6.01 16 16 N -0.37 -9.03 2.94 -350.54 -1.03 -10.06 16 17 C 0.06 0.75 10.95 83.24 0.91 1.66 16 18 C -0.14 -1.57 9.98 22.05 0.22 -1.35 16 19 C -0.08 -1.61 10.08 22.36 0.23 -1.39 16 20 C -0.12 -3.97 9.74 22.29 0.22 -3.75 16 21 C 0.06 2.32 6.72 39.24 0.26 2.59 16 22 H 0.08 3.39 7.21 -2.39 -0.02 3.37 16 23 H 0.06 2.99 4.40 -2.39 -0.01 2.98 16 24 H 0.07 2.99 6.33 -2.39 -0.02 2.98 16 25 H 0.28 16.10 8.31 -92.71 -0.77 15.33 16 26 H 0.27 3.03 8.06 -2.91 -0.02 3.01 16 27 H 0.22 0.30 8.06 -2.91 -0.02 0.27 16 28 H 0.20 0.30 8.06 -2.91 -0.02 0.27 16 29 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.12 4.77 7.18 -2.91 -0.02 4.75 16 Total: -1.00 -91.37 257.16 5.84 -85.53 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: 1.08 Total: 4.92 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.17 Total: 15.06 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -4.00 Total: -113.89 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.07 Total: -39.35 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.67 Total: 47.73 kcal Total: -91.37 5.84 -85.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153037439.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.633 kcal (2) G-P(sol) polarization free energy of solvation -91.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds