Wall clock time and date at job start Sun Mar 29 2020 23:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48492 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47155 * 299.99986 * 3 2 1 6 6 H 1.48508 * 109.47218 * 59.99580 * 3 2 1 7 7 C 1.40057 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00260 * 186.27356 * 7 2 1 9 9 C 1.41313 * 120.00108 * 6.27063 * 7 2 1 10 10 C 1.40760 * 120.17203 * 173.73231 * 9 7 2 11 11 N 1.31859 * 119.88537 * 179.97438 * 10 9 7 12 12 C 1.32227 * 120.24936 * 359.70945 * 11 10 9 13 13 C 1.39654 * 120.34115 * 0.56856 * 12 11 10 14 14 N 1.39739 * 119.94407 * 179.70515 * 13 12 11 15 15 C 1.35945 * 126.48916 * 179.70415 * 14 13 12 16 16 N 1.30466 * 108.55360 * 180.02562 * 15 14 13 17 17 C 1.34165 * 109.37598 * 0.02562 * 16 15 14 18 18 C 1.50694 * 125.88998 * 180.02562 * 17 16 15 19 19 N 1.46903 * 109.47037 * 275.02145 * 18 17 16 20 20 C 1.34605 * 108.22207 * 0.25958 * 17 16 15 21 21 N 1.32163 * 120.11067 * 359.43518 * 13 12 11 22 22 H 0.97008 * 120.00100 * 0.02562 * 1 2 3 23 23 H 1.08005 * 120.05633 * 359.96342 * 10 9 7 24 24 H 1.08001 * 119.82883 * 180.29324 * 12 11 10 25 25 H 1.08004 * 125.72348 * 0.02562 * 15 14 13 26 26 H 1.08999 * 109.47312 * 155.02412 * 18 17 16 27 27 H 1.08997 * 109.47453 * 35.01721 * 18 17 16 28 28 H 1.00896 * 111.00485 * 56.04491 * 19 18 17 29 29 H 1.00901 * 111.00220 * 180.02562 * 19 18 17 30 30 H 1.07999 * 126.58938 * 179.73937 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7012 1.3464 0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0827 -1.2157 0.1027 9 6 1.3074 -2.4331 -0.1326 10 6 2.0138 -3.6434 -0.2650 11 7 1.3548 -4.7788 -0.3883 12 6 0.0325 -4.7855 -0.3824 13 6 -0.6784 -3.5900 -0.2574 14 7 -2.0757 -3.6061 -0.2583 15 6 -2.8967 -2.5290 -0.1400 16 7 -4.1332 -2.9427 -0.1840 17 6 -4.1515 -4.2764 -0.3289 18 6 -5.3843 -5.1380 -0.4221 19 7 -5.8541 -5.4685 0.9300 20 6 -2.8788 -4.7126 -0.3716 21 7 -0.0320 -2.4440 -0.1330 22 1 -0.4851 0.8401 -0.0004 23 1 3.0939 -3.6420 -0.2657 24 1 -0.5004 -5.7199 -0.4791 25 1 -2.5786 -1.5029 -0.0283 26 1 -5.1459 -6.0565 -0.9585 27 1 -6.1658 -4.5977 -0.9562 28 1 -6.0204 -4.6323 1.4695 29 1 -6.6803 -6.0466 0.8945 30 1 -2.5525 -5.7366 -0.4776 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154908769.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:45 Heat of formation + Delta-G solvation = 87.078185 kcal Electronic energy + Delta-G solvation = -16786.440309 eV Core-core repulsion = 14002.881658 eV Total energy + Delta-G solvation = -2783.558651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.23520 -40.87672 -36.34121 -36.01109 -34.76100 -33.55332 -31.24726 -30.42541 -28.10072 -26.02229 -25.11760 -23.90999 -22.16027 -20.94245 -19.77830 -18.74497 -17.42350 -17.21460 -17.02151 -16.72079 -16.44637 -15.65332 -15.20212 -14.92471 -14.84820 -14.59326 -13.94037 -13.47524 -13.41016 -13.09333 -12.91673 -12.73581 -12.08220 -12.05030 -11.71022 -11.66635 -11.21766 -10.73205 -9.71081 -9.65177 -9.62160 -9.27682 -8.55714 -6.81401 0.01980 0.80062 1.39450 1.42135 1.55241 1.58946 1.68597 2.00178 2.15115 2.67866 3.54283 3.61070 3.72742 3.87239 3.96619 3.97355 4.22469 4.32770 4.41581 4.71337 4.78008 4.85155 4.91856 5.04367 5.33046 5.47388 5.70491 5.98721 6.10293 6.19445 6.39723 6.58035 6.66540 6.94925 7.12238 7.62293 8.17582 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.006444 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.164932 B = 4343.755456 C = 5202.681092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.021 3.979 3 Si 0.998 3.002 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.414 4.414 8 H 0.117 0.883 9 C 0.192 3.808 10 C -0.071 4.071 11 N -0.417 5.417 12 C -0.131 4.131 13 C 0.304 3.696 14 N -0.396 5.396 15 C 0.206 3.794 16 N -0.508 5.508 17 C -0.012 4.012 18 C 0.157 3.843 19 N -0.851 5.851 20 C -0.037 4.037 21 N -0.497 5.497 22 H 0.289 0.711 23 H 0.166 0.834 24 H 0.158 0.842 25 H 0.202 0.798 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.341 0.659 29 H 0.357 0.643 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 -2.553 -0.598 5.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.204 4.204 3 Si 0.817 3.183 4 H -0.167 1.167 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.445 4.445 8 H 0.135 0.865 9 C 0.066 3.934 10 C -0.243 4.243 11 N -0.128 5.128 12 C -0.289 4.289 13 C 0.066 3.934 14 N -0.076 5.076 15 C -0.076 4.076 16 N -0.227 5.227 17 C -0.140 4.140 18 C 0.026 3.974 19 N -0.383 5.383 20 C -0.169 4.169 21 N -0.218 5.218 22 H 0.100 0.900 23 H 0.183 0.817 24 H 0.175 0.825 25 H 0.218 0.782 26 H 0.122 0.878 27 H 0.061 0.939 28 H 0.153 0.847 29 H 0.171 0.829 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.968 -2.351 -0.474 5.516 hybrid contribution 0.144 0.867 -0.282 0.923 sum -4.824 -1.484 -0.756 5.103 Atomic orbital electron populations 1.70094 1.09349 1.30445 1.25923 1.27169 0.95771 1.05139 0.92279 0.84899 0.79762 0.74916 0.78750 1.16744 1.19342 1.19172 1.20292 0.96424 0.89263 1.38566 0.86528 1.19657 0.87196 0.95124 0.91396 1.23596 1.00809 0.88617 1.11281 1.67777 1.07870 1.29974 1.07146 1.22411 0.90728 0.96289 1.19517 1.19721 0.83094 0.93580 0.97036 1.43072 1.04003 1.08853 1.51667 1.25341 0.84260 0.94910 1.03138 1.70205 1.19504 1.12176 1.20848 1.21085 0.94806 0.90464 1.07615 1.19912 0.90150 0.96434 0.90901 1.58667 1.40869 1.24506 1.14229 1.22918 0.90134 0.92977 1.10872 1.68807 1.09702 1.23159 1.20145 0.90015 0.81713 0.82468 0.78165 0.87835 0.93855 0.84680 0.82866 0.78431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -35.54 11.51 21.84 0.25 -35.29 16 2 C 0.02 0.95 5.49 85.30 0.47 1.42 16 3 Si 1.00 33.30 29.56 68.60 2.03 35.33 16 4 H -0.24 -7.64 7.11 99.48 0.71 -6.94 16 5 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 6 H -0.27 -8.74 7.11 99.48 0.71 -8.03 16 7 C -0.41 -19.62 9.15 23.47 0.21 -19.40 16 8 H 0.12 4.89 7.85 -2.91 -0.02 4.87 16 9 C 0.19 9.80 6.54 40.20 0.26 10.06 16 10 C -0.07 -3.34 10.98 85.31 0.94 -2.40 16 11 N -0.42 -19.52 10.47 -192.39 -2.01 -21.53 16 12 C -0.13 -5.92 10.66 84.98 0.91 -5.01 16 13 C 0.30 14.66 7.51 133.01 1.00 15.66 16 14 N -0.40 -17.20 2.98 -355.38 -1.06 -18.26 16 15 C 0.21 8.99 12.20 179.98 2.20 11.19 16 16 N -0.51 -20.34 11.24 -187.69 -2.11 -22.45 16 17 C -0.01 -0.42 6.59 41.37 0.27 -0.15 16 18 C 0.16 3.91 7.32 85.55 0.63 4.54 16 19 N -0.85 -19.33 9.61 -190.01 -1.83 -21.16 16 20 C -0.04 -1.35 10.75 83.02 0.89 -0.46 16 21 N -0.50 -26.08 7.61 -185.54 -1.41 -27.50 16 22 H 0.29 12.49 8.29 -92.70 -0.77 11.72 16 23 H 0.17 6.69 8.06 -2.91 -0.02 6.67 16 24 H 0.16 6.08 6.79 -2.91 -0.02 6.06 16 25 H 0.20 9.13 8.06 -2.91 -0.02 9.11 16 26 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.34 8.33 8.99 -89.70 -0.81 7.52 16 29 H 0.36 5.75 9.08 -89.69 -0.81 4.94 16 30 H 0.20 5.83 7.13 -2.91 -0.02 5.80 16 Total: -1.00 -59.95 272.04 1.21 -58.73 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.42 Total: 36.65 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 7.77 Total: 15.46 kcal Atomic # 7 Polarization: -138.00 SS G_CDS: -8.17 Total: -146.17 kcal Atomic # 14 Polarization: 33.30 SS G_CDS: 2.03 Total: 35.33 kcal Total: -59.95 1.21 -58.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154908769.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.812 kcal (2) G-P(sol) polarization free energy of solvation -59.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds