Wall clock time and date at job start Sun Mar 29 2020 23:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36821 * 120.00269 * 2 1 4 4 H 1.07995 * 119.99913 * 208.67413 * 3 2 1 5 5 C 1.39070 * 119.99709 * 28.68052 * 3 2 1 6 6 N 1.31346 * 120.00172 * 22.65059 * 5 3 2 7 7 Si 1.86805 * 119.99686 * 202.65552 * 5 3 2 8 8 H 1.48495 * 109.47336 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.46994 * 119.99513 * 7 5 3 10 10 H 1.48500 * 109.46875 * 239.99726 * 7 5 3 11 11 C 1.34778 * 119.99738 * 179.97438 * 2 1 3 12 12 O 1.21616 * 119.99874 * 176.05502 * 11 2 1 13 13 C 1.47652 * 120.00214 * 355.77559 * 11 2 1 14 14 C 1.39165 * 119.39266 * 175.09100 * 13 11 2 15 15 C 1.39016 * 118.79773 * 180.02562 * 14 13 11 16 16 N 1.37154 * 134.53514 * 180.02562 * 15 14 13 17 17 H 0.97003 * 125.04751 * 359.96934 * 16 15 14 18 18 C 1.36645 * 109.90543 * 179.97438 * 16 15 14 19 19 C 1.34559 * 109.96833 * 0.02562 * 18 16 15 20 20 C 1.41216 * 118.22192 * 0.02562 * 15 14 13 21 21 C 1.39777 * 119.31886 * 359.97438 * 20 15 14 22 22 N 1.31267 * 120.31508 * 359.72858 * 21 20 15 23 23 H 1.09001 * 109.47538 * 243.45134 * 1 2 3 24 24 H 1.09007 * 109.46947 * 3.45307 * 1 2 3 25 25 H 1.09000 * 109.47258 * 123.44678 * 1 2 3 26 26 H 0.96998 * 120.00095 * 180.02562 * 6 5 3 27 27 H 1.08003 * 120.60316 * 359.97188 * 14 13 11 28 28 H 1.08005 * 125.01817 * 179.97438 * 18 16 15 29 29 H 1.07995 * 126.51563 * 179.97438 * 19 18 16 30 30 H 1.08000 * 119.84325 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1298 1.2422 -0.4488 5 6 1.5818 2.3154 0.5780 6 7 0.6425 2.1870 1.4872 7 14 2.1554 4.0164 0.0613 8 1 3.2155 3.8890 -0.9707 9 1 1.0088 4.7768 -0.4976 10 1 2.6981 4.7355 1.2417 11 6 2.1388 -1.1672 0.0005 12 8 3.3528 -1.1686 -0.0719 13 6 1.4036 -2.4442 0.0953 14 6 2.1016 -3.6436 -0.0086 15 6 1.3970 -4.8385 0.0819 16 7 1.7414 -6.1649 0.0266 17 1 2.6423 -6.5017 -0.1001 18 6 0.6272 -6.9416 0.1766 19 6 -0.4588 -6.1623 0.3309 20 6 -0.0005 -4.7767 0.2752 21 6 -0.6240 -3.5292 0.3691 22 7 0.0835 -2.4268 0.2836 23 1 -0.3634 -0.4593 0.9193 24 1 -0.3633 1.0259 -0.0619 25 1 -0.3634 -0.5664 -0.8575 26 1 0.2465 2.9755 1.8901 27 1 3.1713 -3.6461 -0.1576 28 1 0.6193 -8.0216 0.1712 29 1 -1.4760 -6.4976 0.4694 30 1 -1.6922 -3.4720 0.5173 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154962883.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:21 Heat of formation + Delta-G solvation = 34.907585 kcal Electronic energy + Delta-G solvation = -16985.850599 eV Core-core repulsion = 14167.736910 eV Total energy + Delta-G solvation = -2818.113689 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.45285 -40.50250 -38.47222 -36.74653 -33.78529 -33.07581 -31.54004 -30.22477 -28.10834 -26.73178 -24.56755 -24.15606 -21.73095 -21.19806 -19.52590 -18.77347 -17.70878 -17.36057 -16.69339 -16.34867 -16.13903 -15.76313 -15.40050 -14.99856 -14.88936 -14.18554 -13.87771 -13.74247 -13.51148 -13.28840 -13.26769 -12.64172 -12.47956 -12.31745 -12.09275 -11.08527 -10.90486 -10.71174 -10.09818 -9.79036 -9.61552 -8.81330 -8.44410 -6.02719 -0.28018 0.48596 1.37406 1.41665 1.57736 1.68481 2.06672 2.14331 2.30131 2.89590 3.01891 3.19507 3.52553 3.74510 3.94983 4.07805 4.26519 4.43653 4.55858 4.85471 4.93768 4.96012 5.04252 5.06847 5.38154 5.44037 5.59789 5.68616 5.95061 6.10374 6.43517 6.60932 6.99666 7.16465 7.37324 7.99532 8.60628 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.055869 B = 0.005622 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.048924 B = 4978.957333 C = 5387.136748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.427 5.427 3 C -0.359 4.359 4 H 0.074 0.926 5 C 0.005 3.995 6 N -0.877 5.877 7 Si 0.995 3.005 8 H -0.270 1.270 9 H -0.259 1.259 10 H -0.272 1.272 11 C 0.467 3.533 12 O -0.637 6.637 13 C 0.071 3.929 14 C -0.131 4.131 15 C 0.095 3.905 16 N -0.574 5.574 17 H 0.432 0.568 18 C 0.073 3.927 19 C -0.201 4.201 20 C -0.164 4.164 21 C 0.145 3.855 22 N -0.492 5.492 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.280 0.720 27 H 0.127 0.873 28 H 0.227 0.773 29 H 0.182 0.818 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 -17.434 -2.183 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.141 5.141 3 C -0.487 4.487 4 H 0.091 0.909 5 C -0.199 4.199 6 N -0.512 5.512 7 Si 0.817 3.183 8 H -0.194 1.194 9 H -0.183 1.183 10 H -0.197 1.197 11 C 0.258 3.742 12 O -0.527 6.527 13 C -0.059 4.059 14 C -0.156 4.156 15 C -0.020 4.020 16 N -0.178 5.178 17 H 0.271 0.729 18 C -0.054 4.054 19 C -0.227 4.227 20 C -0.172 4.172 21 C -0.023 4.023 22 N -0.204 5.204 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.145 0.855 28 H 0.243 0.757 29 H 0.199 0.801 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.847 -16.468 -2.052 17.595 hybrid contribution 1.346 0.148 -0.117 1.360 sum -4.501 -16.320 -2.169 17.067 Atomic orbital electron populations 1.21532 0.78602 1.00184 1.00273 1.43714 1.07332 1.04295 1.58788 1.19703 1.03927 0.86624 1.38415 0.90852 1.26299 0.96660 1.03800 0.93189 1.70114 1.27149 1.32473 1.21494 0.84898 0.78775 0.76153 0.78515 1.19409 1.18349 1.19744 1.18334 0.86600 0.84360 0.84955 1.90514 1.14991 1.87611 1.59545 1.20633 0.90456 0.92709 1.02075 1.20726 1.00728 0.89610 1.04499 1.18099 0.94810 0.85863 1.03190 1.41796 1.11630 1.02334 1.62056 0.72874 1.22831 0.83781 0.98837 0.99931 1.22078 1.00912 0.87841 1.11846 1.20790 0.92892 0.96869 1.06698 1.22980 1.01035 0.85258 0.93044 1.68203 1.06151 1.31754 1.14341 0.92338 0.92521 0.93373 0.91065 0.85464 0.75691 0.80083 0.79134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.04 7.84 127.77 1.00 8.05 16 2 N -0.43 -25.20 2.97 -662.41 -1.97 -27.17 16 3 C -0.36 -22.06 9.11 84.11 0.77 -21.29 16 4 H 0.07 4.75 7.56 -2.91 -0.02 4.73 16 5 C 0.01 0.29 4.72 84.97 0.40 0.69 16 6 N -0.88 -49.37 11.51 21.68 0.25 -49.12 16 7 Si 0.99 43.42 29.61 68.60 2.03 45.45 16 8 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 9 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 C 0.47 27.22 7.59 86.73 0.66 27.88 16 12 O -0.64 -40.65 16.04 -4.08 -0.07 -40.72 16 13 C 0.07 3.39 6.65 41.62 0.28 3.66 16 14 C -0.13 -5.24 9.64 22.68 0.22 -5.02 16 15 C 0.10 2.91 7.33 39.23 0.29 3.20 16 16 N -0.57 -10.98 6.04 -187.55 -1.13 -12.11 16 17 H 0.43 5.68 8.96 -92.71 -0.83 4.85 16 18 C 0.07 0.96 11.82 83.10 0.98 1.94 16 19 C -0.20 -3.55 11.08 23.45 0.26 -3.29 16 20 C -0.16 -4.63 6.42 -20.15 -0.13 -4.76 16 21 C 0.14 4.59 11.26 85.15 0.96 5.55 16 22 N -0.49 -20.68 5.95 -184.30 -1.10 -21.78 16 23 H 0.06 3.00 6.84 -2.39 -0.02 2.98 16 24 H 0.06 2.99 6.03 -2.38 -0.01 2.98 16 25 H 0.05 2.26 7.27 -2.39 -0.02 2.24 16 26 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.13 5.17 7.62 -2.91 -0.02 5.15 16 28 H 0.23 0.53 8.06 -2.91 -0.02 0.51 16 29 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.19 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -81.12 263.67 4.06 -77.06 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.36 Total: 11.77 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 5.68 Total: 16.61 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.95 Total: -110.17 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.07 Total: -40.72 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -81.12 4.06 -77.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154962883.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.968 kcal (2) G-P(sol) polarization free energy of solvation -81.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds