Wall clock time and date at job start Sun Mar 29 2020 23:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35789 * 116.99948 * 2 1 4 4 C 1.39897 * 119.60031 * 359.97438 * 3 2 1 5 5 C 1.36079 * 120.89605 * 180.02562 * 4 3 2 6 6 C 1.40295 * 119.72536 * 0.02562 * 5 4 3 7 7 C 1.40689 * 121.89666 * 179.72675 * 6 5 4 8 8 N 1.31652 * 118.51803 * 179.73027 * 7 6 5 9 9 C 1.33207 * 121.58346 * 0.56385 * 8 7 6 10 10 N 1.38324 * 118.69666 * 179.72232 * 9 8 7 11 11 C 1.36955 * 120.00117 * 359.97438 * 10 9 8 12 12 H 1.07995 * 119.99721 * 0.02562 * 11 10 9 13 13 C 1.38844 * 120.00009 * 180.02562 * 11 10 9 14 14 N 1.31532 * 119.99691 * 0.02562 * 13 11 10 15 15 Si 1.86790 * 120.00003 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47189 * 60.00448 * 15 13 11 17 17 H 1.48507 * 109.47494 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47496 * 300.00338 * 15 13 11 19 19 N 1.31942 * 122.60154 * 359.70358 * 9 8 7 20 20 C 1.33907 * 120.20040 * 359.97438 * 19 9 8 21 21 C 1.37780 * 119.60467 * 180.02562 * 3 2 1 22 22 H 1.09001 * 109.47235 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47601 * 300.00241 * 1 2 3 24 24 H 1.09004 * 109.47280 * 60.00450 * 1 2 3 25 25 H 1.07998 * 119.54975 * 0.02562 * 4 3 2 26 26 H 1.08007 * 120.13822 * 180.02562 * 5 4 3 27 27 H 1.07998 * 120.73735 * 359.97438 * 7 6 5 28 28 H 0.97001 * 119.99820 * 179.97438 * 10 9 8 29 29 H 0.97003 * 119.99808 * 180.02562 * 14 13 11 30 30 H 1.08003 * 120.27638 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2753 2.3778 -0.0005 5 6 1.8655 3.6040 -0.0011 6 6 3.2650 3.7023 -0.0016 7 6 3.9227 4.9460 -0.0079 8 7 5.2392 4.9608 -0.0026 9 6 5.9495 3.8339 -0.0027 10 7 7.3302 3.9192 -0.0028 11 6 7.9406 5.1451 -0.0034 12 1 7.3440 6.0453 -0.0033 13 6 9.3264 5.2306 -0.0040 14 7 10.0529 4.1342 -0.0046 15 14 10.1590 6.9027 -0.0055 16 1 9.7536 7.6586 1.2068 17 1 11.6330 6.7219 -0.0054 18 1 9.7524 7.6572 -1.2182 19 7 5.3884 2.6398 -0.0023 20 6 4.0545 2.5224 -0.0013 21 6 3.4218 1.2725 -0.0005 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.1977 2.3053 -0.0005 26 1 1.2590 4.4977 -0.0011 27 1 3.3603 5.8679 -0.0129 28 1 7.8660 3.1106 -0.0025 29 1 11.0211 4.1939 -0.0047 30 1 4.0081 0.3655 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155531342.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:09 Heat of formation + Delta-G solvation = 35.397955 kcal Electronic energy + Delta-G solvation = -16473.418266 eV Core-core repulsion = 13655.325842 eV Total energy + Delta-G solvation = -2818.092425 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29128 -38.99393 -36.46389 -34.67819 -33.05291 -31.87002 -30.02340 -28.71535 -27.08439 -25.07804 -23.75226 -22.03342 -21.61569 -18.78936 -18.00449 -17.31382 -16.39320 -15.96773 -15.54864 -15.13174 -14.73823 -14.09734 -13.81829 -13.64011 -13.53162 -12.83034 -12.38231 -12.18276 -12.08177 -11.83352 -11.45641 -10.93047 -10.91098 -10.75871 -10.54606 -10.23691 -9.90678 -9.80273 -8.78766 -7.98147 -7.72011 -7.18647 -6.85816 -3.96174 1.13403 1.76419 2.77289 3.05963 3.06183 3.09211 3.47380 3.72430 3.83872 4.47659 4.69500 5.01856 5.18240 5.18999 5.23861 5.26799 5.36134 5.50486 5.56405 5.80835 5.82794 6.08429 6.51349 6.65672 6.70275 6.77800 7.01272 7.12280 7.25614 7.63424 7.78282 8.19099 8.39210 8.82829 9.05067 9.70062 10.28606 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.058788 B = 0.004748 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.171066 B = 5895.446449 C = 6356.472734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.169 3.831 4 C -0.273 4.273 5 C 0.001 3.999 6 C -0.290 4.290 7 C 0.225 3.775 8 N -0.543 5.543 9 C 0.483 3.517 10 N -0.478 5.478 11 C -0.280 4.280 12 H 0.121 0.879 13 C 0.021 3.979 14 N -0.870 5.870 15 Si 0.947 3.053 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.267 1.267 19 N -0.625 5.625 20 C 0.273 3.727 21 C -0.196 4.196 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.157 0.843 28 H 0.415 0.585 29 H 0.283 0.717 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.989 -1.010 -0.010 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.121 3.879 4 C -0.294 4.294 5 C -0.020 4.020 6 C -0.300 4.300 7 C 0.036 3.964 8 N -0.261 5.261 9 C 0.128 3.872 10 N -0.083 5.083 11 C -0.412 4.412 12 H 0.138 0.862 13 C -0.186 4.186 14 N -0.504 5.504 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.192 1.192 19 N -0.358 5.358 20 C 0.135 3.865 21 C -0.219 4.219 22 H 0.111 0.889 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.174 0.826 28 H 0.252 0.748 29 H 0.093 0.907 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.043 -1.058 -0.008 12.089 hybrid contribution -0.492 0.407 0.002 0.639 sum -12.535 -0.650 -0.006 12.552 Atomic orbital electron populations 1.22967 0.79090 1.03202 1.01211 1.86025 1.20862 1.27778 1.88737 1.18831 0.91733 0.83484 0.93849 1.20542 0.99038 0.92385 1.17465 1.20457 0.92824 0.96644 0.92071 1.19015 0.94912 0.96097 1.20022 1.23061 0.89415 0.95923 0.87990 1.67566 1.07877 1.31684 1.18948 1.18978 0.86832 0.84336 0.97023 1.40766 1.00092 1.10192 1.57226 1.20155 0.90053 0.85564 1.45409 0.86157 1.25606 0.96345 1.00283 0.96352 1.69686 1.07726 1.28388 1.44628 0.85647 0.77690 0.79909 0.79584 1.19249 1.20471 1.19242 1.68168 1.10025 1.24126 1.33471 1.17969 0.88409 0.91415 0.88750 1.19605 0.90501 0.96921 1.14841 0.88856 0.92851 0.92859 0.86410 0.86180 0.82577 0.74786 0.90667 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.80 101.05 0.99 1.29 16 2 O -0.32 -4.78 10.47 -19.08 -0.20 -4.98 16 3 C 0.17 2.84 6.68 -39.13 -0.26 2.58 16 4 C -0.27 -4.00 8.94 -39.74 -0.36 -4.35 16 5 C 0.00 0.02 9.78 -39.58 -0.39 -0.37 16 6 C -0.29 -5.52 5.75 -106.77 -0.61 -6.13 16 7 C 0.23 4.25 11.14 -16.70 -0.19 4.06 16 8 N -0.54 -12.56 8.99 -13.51 -0.12 -12.68 16 9 C 0.48 12.18 8.35 -322.71 -2.70 9.48 16 10 N -0.48 -12.49 5.42 -12.80 -0.07 -12.56 16 11 C -0.28 -7.27 9.68 -15.04 -0.15 -7.41 16 12 H 0.12 3.08 7.01 -52.49 -0.37 2.71 16 13 C 0.02 0.53 5.50 -17.46 -0.10 0.43 16 14 N -0.87 -22.59 13.05 55.49 0.72 -21.87 16 15 Si 0.95 19.24 29.55 -169.99 -5.02 14.21 16 16 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 17 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 N -0.62 -15.40 10.46 -11.94 -0.12 -15.53 16 20 C 0.27 5.97 6.61 -84.84 -0.56 5.40 16 21 C -0.20 -3.86 9.97 -39.05 -0.39 -4.25 16 22 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.46 7.64 -51.93 -0.40 0.07 16 24 H 0.05 0.46 7.63 -51.93 -0.40 0.06 16 25 H 0.12 1.34 6.22 -52.49 -0.33 1.02 16 26 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.41 11.02 8.00 -40.82 -0.33 10.70 16 29 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.13 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 268.60 15.07 4.05 4.05 Total: -1.00 -29.50 268.60 -8.11 -37.61 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -2.64 Total: 11.02 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -4.70 Total: 0.73 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.41 Total: -62.64 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.20 Total: -4.98 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.50 -8.11 -37.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531342.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.007 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds