Wall clock time and date at job start Sun Mar 29 2020 23:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35282 * 117.00024 * 2 1 4 4 N 1.32237 * 120.82401 * 0.25341 * 3 2 1 5 5 C 1.33093 * 121.45376 * 180.29809 * 4 3 2 6 6 N 1.38328 * 118.63460 * 179.71339 * 5 4 3 7 7 C 1.36965 * 119.99873 * 359.45241 * 6 5 4 8 8 H 1.08001 * 120.00255 * 0.27893 * 7 6 5 9 9 C 1.38843 * 120.00325 * 180.27950 * 7 6 5 10 10 N 1.31534 * 119.99507 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00317 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47294 * 90.00171 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00031 * 11 9 7 14 14 H 1.48505 * 109.47256 * 330.00036 * 11 9 7 15 15 N 1.31972 * 122.73361 * 359.43001 * 5 4 3 16 16 C 1.33997 * 120.35905 * 0.27390 * 15 5 4 17 17 C 1.40219 * 121.92779 * 180.02562 * 16 15 5 18 18 C 1.36313 * 119.58459 * 179.97438 * 17 16 15 19 19 C 1.39212 * 121.02846 * 359.97438 * 18 17 16 20 20 C 1.36403 * 120.91714 * 0.02562 * 19 18 17 21 21 C 1.39952 * 119.52141 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.47779 * 299.99650 * 1 2 3 23 23 H 1.08998 * 109.47270 * 59.99775 * 1 2 3 24 24 H 1.09001 * 109.47563 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00331 * 179.73820 * 6 5 4 26 26 H 0.96999 * 119.99792 * 180.02562 * 10 9 7 27 27 H 1.08004 * 120.21036 * 359.96458 * 17 16 15 28 28 H 1.08003 * 119.48688 * 180.02562 * 18 17 16 29 29 H 1.08000 * 119.54516 * 180.02562 * 19 18 17 30 30 H 1.07999 * 120.23898 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.3389 2.3246 0.0050 5 6 1.9301 3.5171 -0.0008 6 7 1.1367 4.6503 -0.0011 7 6 -0.2277 4.5309 -0.0068 8 1 -0.6842 3.5522 -0.0065 9 6 -1.0241 5.6683 -0.0130 10 7 -0.4681 6.8603 -0.0139 11 14 -2.8849 5.5056 -0.0201 12 1 -3.3837 5.4661 1.3781 13 1 -3.4808 6.6685 -0.7256 14 1 -3.2696 4.2527 -0.7184 15 7 3.2417 3.6634 -0.0008 16 6 4.0429 2.5894 -0.0003 17 6 5.4402 2.7066 0.0002 18 6 6.2099 1.5816 0.0012 19 6 5.6306 0.3158 0.0023 20 6 4.2749 0.1655 0.0018 21 6 3.4553 1.2999 0.0008 22 1 -0.3635 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.5467 5.5294 -0.0015 26 1 -1.0244 7.6549 -0.0179 27 1 5.9037 3.6821 -0.0004 28 1 7.2860 1.6738 0.0020 29 1 6.2633 -0.5595 0.0035 30 1 3.8371 -0.8218 0.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533882.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:42 Heat of formation + Delta-G solvation = 17.753591 kcal Electronic energy + Delta-G solvation = -16938.600347 eV Core-core repulsion = 14119.742805 eV Total energy + Delta-G solvation = -2818.857542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.05329 -39.61463 -38.80810 -36.49567 -34.01774 -33.66146 -31.88614 -30.24922 -28.39737 -26.84777 -24.97444 -23.93122 -22.82515 -20.38335 -19.93283 -18.66123 -18.02568 -17.48249 -17.17300 -16.34939 -16.03357 -15.67675 -15.42490 -15.37305 -14.85623 -14.58619 -13.65239 -13.57389 -13.19405 -12.93138 -12.80824 -12.74565 -12.52322 -12.33747 -12.11927 -11.64754 -11.39426 -11.01601 -10.46882 -9.91332 -9.75831 -8.66071 -8.60987 -5.88977 -0.27717 0.19154 1.21341 1.39031 1.44412 1.53643 1.89849 2.17010 2.28611 2.68555 2.98052 3.49765 3.54924 3.94460 4.02097 4.22668 4.39162 4.40319 4.47265 4.59044 4.66975 4.77980 4.97308 5.25515 5.30481 5.45256 5.51980 5.69477 5.77480 6.04450 6.11222 6.47628 6.59661 7.04675 7.25758 7.89313 8.56710 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.030258 B = 0.006825 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.148052 B = 4101.531045 C = 5011.524204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.297 6.297 3 C 0.417 3.583 4 N -0.625 5.625 5 C 0.519 3.481 6 N -0.514 5.514 7 C -0.308 4.308 8 H 0.110 0.890 9 C -0.023 4.023 10 N -0.918 5.918 11 Si 1.010 2.990 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.259 1.259 15 N -0.657 5.657 16 C 0.218 3.782 17 C -0.171 4.171 18 C -0.041 4.041 19 C -0.181 4.181 20 C -0.032 4.032 21 C -0.265 4.265 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.141 0.859 25 H 0.405 0.595 26 H 0.282 0.718 27 H 0.130 0.870 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -13.375 -0.008 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.214 3.786 4 N -0.366 5.366 5 C 0.163 3.837 6 N -0.126 5.126 7 C -0.439 4.439 8 H 0.128 0.872 9 C -0.224 4.224 10 N -0.555 5.555 11 Si 0.832 3.168 12 H -0.194 1.194 13 H -0.200 1.200 14 H -0.183 1.183 15 N -0.392 5.392 16 C 0.085 3.915 17 C -0.192 4.192 18 C -0.061 4.061 19 C -0.200 4.200 20 C -0.052 4.052 21 C -0.275 4.275 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.159 0.841 25 H 0.241 0.759 26 H 0.091 0.909 27 H 0.148 0.852 28 H 0.181 0.819 29 H 0.178 0.822 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.807 -12.410 -0.006 13.309 hybrid contribution -0.677 0.476 0.005 0.828 sum 4.129 -11.934 -0.001 12.628 Atomic orbital electron populations 1.23143 0.75587 1.05116 1.02087 1.86106 1.24489 1.22981 1.86376 1.20276 0.88892 0.84726 0.84733 1.67156 1.41523 0.98072 1.29841 1.18856 0.85566 0.85171 0.94068 1.40632 1.05533 1.04005 1.62420 1.20130 0.80154 0.95677 1.47901 0.87246 1.26417 1.06184 0.93765 0.96063 1.69787 1.38966 0.98602 1.48188 0.84667 0.74758 0.78536 0.78851 1.19386 1.19973 1.18298 1.68271 1.02480 1.33118 1.35370 1.18984 0.95131 0.86539 0.90804 1.20633 0.89461 1.00704 1.08424 1.21300 1.01256 0.91261 0.92293 1.21055 0.94218 0.98455 1.06312 1.20977 0.94131 0.96611 0.93512 1.18553 0.90813 0.97128 1.21017 0.93121 0.93191 0.84091 0.75911 0.90880 0.85166 0.81908 0.82226 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.42 113.37 1.18 2.17 16 2 O -0.30 -10.07 9.84 -85.68 -0.84 -10.91 16 3 C 0.42 17.49 7.57 85.44 0.65 18.14 16 4 N -0.63 -30.50 7.96 -310.01 -2.47 -32.97 16 5 C 0.52 27.50 8.35 261.49 2.18 29.68 16 6 N -0.51 -28.60 5.42 -194.44 -1.05 -29.66 16 7 C -0.31 -16.91 9.68 84.04 0.81 -16.09 16 8 H 0.11 5.92 7.01 -2.91 -0.02 5.90 16 9 C -0.02 -1.21 5.50 84.88 0.47 -0.75 16 10 N -0.92 -50.48 13.05 21.65 0.28 -50.20 16 11 Si 1.01 40.90 29.55 68.60 2.03 42.93 16 12 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 13 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 14 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 15 N -0.66 -33.11 10.46 -191.79 -2.01 -35.11 16 16 C 0.22 9.38 6.61 40.15 0.27 9.64 16 17 C -0.17 -5.79 10.01 22.30 0.22 -5.57 16 18 C -0.04 -1.00 9.95 22.05 0.22 -0.78 16 19 C -0.18 -4.23 9.96 22.08 0.22 -4.01 16 20 C -0.03 -0.94 9.60 22.26 0.21 -0.73 16 21 C -0.27 -10.46 5.75 -21.19 -0.12 -10.58 16 22 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 23 H 0.05 1.53 8.12 -2.39 -0.02 1.51 16 24 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.40 23.17 8.00 -92.71 -0.74 22.43 16 26 H 0.28 14.40 8.31 -92.71 -0.77 13.62 16 27 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 28 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.14 3.50 7.71 -2.91 -0.02 3.48 16 Total: -1.00 -66.60 270.60 2.69 -63.91 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.44 Total: 30.90 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 6.31 Total: 21.12 kcal Atomic # 7 Polarization: -142.70 SS G_CDS: -5.24 Total: -147.94 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.84 Total: -10.91 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -66.60 2.69 -63.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533882.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.663 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds